Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.461.1 and Xcc-8004.462.1 are separated by 122 nucleotides Xcc-8004.462.1 and Xcc-8004.463.1 are separated by 32 nucleotides Xcc-8004.463.1 and Xcc-8004.464.1 are separated by 36 nucleotides
Xcc-8004.461.1: Xcc-8004.461.1 - Transcriptional regulator, MarR family, at 423,461 to 424,342
Xcc-8004.461.1
Xcc-8004.462.1: Xcc-8004.462.1 - hypothetical protein, at 424,465 to 424,875
Xcc-8004.462.1
Xcc-8004.463.1: Xcc-8004.463.1 - 2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase (EC 1.3.1.-), at 424,908 to 425,675
Xcc-8004.463.1
Xcc-8004.464.1: Xcc-8004.464.1 - Putative benzaldehyde dehydrogenase oxidoreductase protein (EC 1.2.1.28), at 425,712 to 427,193
Xcc-8004.464.1
Position (kb) 424
425 Strain fitness (log2 ratio) -2
-1
0
1 at 423.623 kb on - strand, within Xcc-8004.461.1 at 423.777 kb on + strand, within Xcc-8004.461.1 at 423.777 kb on + strand, within Xcc-8004.461.1 at 423.777 kb on + strand, within Xcc-8004.461.1 at 423.777 kb on + strand, within Xcc-8004.461.1 at 424.340 kb on + strand at 424.380 kb on + strand at 424.381 kb on - strand at 424.381 kb on - strand at 424.389 kb on + strand at 424.390 kb on - strand at 424.474 kb on + strand at 424.474 kb on + strand at 424.475 kb on - strand at 424.528 kb on + strand, within Xcc-8004.462.1 at 424.528 kb on + strand, within Xcc-8004.462.1 at 424.528 kb on + strand, within Xcc-8004.462.1 at 424.529 kb on - strand, within Xcc-8004.462.1 at 424.529 kb on - strand, within Xcc-8004.462.1 at 424.529 kb on - strand, within Xcc-8004.462.1 at 424.673 kb on - strand, within Xcc-8004.462.1 at 424.722 kb on + strand, within Xcc-8004.462.1 at 424.874 kb on - strand at 425.030 kb on + strand, within Xcc-8004.463.1 at 425.030 kb on + strand, within Xcc-8004.463.1 at 425.030 kb on + strand, within Xcc-8004.463.1 at 425.182 kb on - strand, within Xcc-8004.463.1 at 425.377 kb on - strand, within Xcc-8004.463.1 at 425.673 kb on + strand at 425.674 kb on - strand at 425.674 kb on - strand at 425.674 kb on - strand at 425.771 kb on + strand at 425.772 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 423,623 - Xcc-8004.461.1 0.18 +0.2 423,777 + Xcc-8004.461.1 0.36 +0.3 423,777 + Xcc-8004.461.1 0.36 -0.8 423,777 + Xcc-8004.461.1 0.36 +0.7 423,777 + Xcc-8004.461.1 0.36 +0.2 424,340 + -1.3 424,380 + +0.1 424,381 - -0.3 424,381 - -1.8 424,389 + +0.1 424,390 - -0.8 424,474 + -0.2 424,474 + -0.4 424,475 - +1.1 424,528 + Xcc-8004.462.1 0.15 +0.4 424,528 + Xcc-8004.462.1 0.15 -1.5 424,528 + Xcc-8004.462.1 0.15 +1.1 424,529 - Xcc-8004.462.1 0.16 +0.4 424,529 - Xcc-8004.462.1 0.16 -1.2 424,529 - Xcc-8004.462.1 0.16 -0.1 424,673 - Xcc-8004.462.1 0.51 -0.2 424,722 + Xcc-8004.462.1 0.63 -0.9 424,874 - +0.1 425,030 + Xcc-8004.463.1 0.16 -0.2 425,030 + Xcc-8004.463.1 0.16 +0.3 425,030 + Xcc-8004.463.1 0.16 -0.3 425,182 - Xcc-8004.463.1 0.36 -0.3 425,377 - Xcc-8004.463.1 0.61 +0.0 425,673 + -0.3 425,674 - +0.7 425,674 - -0.7 425,674 - -0.1 425,771 + +0.4 425,772 - -1.8
Or see this region's nucleotide sequence