Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.449.1 and Xcc-8004.451.1 are separated by 267 nucleotides Xcc-8004.451.1 and Xcc-8004.453.1 are separated by 411 nucleotides Xcc-8004.453.1 and Xcc-8004.454.1 are separated by 72 nucleotides
Xcc-8004.449.1: Xcc-8004.449.1 - Integrase, at 413,800 to 414,813
Xcc-8004.449.1
Xcc-8004.451.1: Xcc-8004.451.1 - Dihydroxy-acid dehydratase (EC 4.2.1.9), at 415,081 to 416,919
Xcc-8004.451.1
Xcc-8004.453.1: Xcc-8004.453.1 - Proteinase inhibitor, at 417,331 to 417,597
Xcc-8004.453.1
Xcc-8004.454.1: Xcc-8004.454.1 - FIG01211924: hypothetical protein, at 417,670 to 417,861
Xcc-8004.454.1
Position (kb) 415
416
417 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 414.226 kb on + strand, within Xcc-8004.449.1 at 414.227 kb on - strand, within Xcc-8004.449.1 at 414.368 kb on + strand, within Xcc-8004.449.1 at 414.368 kb on + strand, within Xcc-8004.449.1 at 414.368 kb on + strand, within Xcc-8004.449.1 at 414.368 kb on + strand, within Xcc-8004.449.1 at 414.368 kb on + strand, within Xcc-8004.449.1 at 414.368 kb on + strand, within Xcc-8004.449.1 at 414.369 kb on - strand, within Xcc-8004.449.1 at 414.369 kb on - strand, within Xcc-8004.449.1 at 414.464 kb on - strand, within Xcc-8004.449.1 at 414.464 kb on - strand, within Xcc-8004.449.1 at 414.464 kb on - strand, within Xcc-8004.449.1 at 414.496 kb on + strand, within Xcc-8004.449.1 at 414.496 kb on + strand, within Xcc-8004.449.1 at 414.560 kb on + strand, within Xcc-8004.449.1 at 414.561 kb on - strand, within Xcc-8004.449.1 at 414.587 kb on + strand, within Xcc-8004.449.1 at 414.739 kb on + strand at 414.739 kb on + strand at 414.739 kb on + strand at 414.740 kb on - strand at 414.740 kb on - strand at 414.827 kb on - strand at 415.028 kb on - strand at 415.028 kb on - strand at 415.037 kb on + strand at 415.056 kb on + strand at 415.146 kb on - strand at 415.146 kb on - strand at 415.434 kb on - strand, within Xcc-8004.451.1 at 415.649 kb on + strand, within Xcc-8004.451.1 at 415.793 kb on + strand, within Xcc-8004.451.1 at 415.793 kb on + strand, within Xcc-8004.451.1 at 415.793 kb on + strand, within Xcc-8004.451.1 at 415.800 kb on + strand, within Xcc-8004.451.1 at 415.801 kb on - strand, within Xcc-8004.451.1 at 415.801 kb on - strand, within Xcc-8004.451.1 at 415.801 kb on - strand, within Xcc-8004.451.1 at 416.710 kb on + strand, within Xcc-8004.451.1 at 416.710 kb on + strand, within Xcc-8004.451.1 at 416.837 kb on + strand at 417.021 kb on - strand at 417.021 kb on - strand at 417.175 kb on - strand at 417.309 kb on + strand at 417.309 kb on + strand at 417.319 kb on + strand at 417.319 kb on + strand at 417.320 kb on - strand at 417.916 kb on + strand at 417.916 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 414,226 + Xcc-8004.449.1 0.42 +0.5 414,227 - Xcc-8004.449.1 0.42 -0.5 414,368 + Xcc-8004.449.1 0.56 +0.7 414,368 + Xcc-8004.449.1 0.56 -0.6 414,368 + Xcc-8004.449.1 0.56 +0.7 414,368 + Xcc-8004.449.1 0.56 +1.0 414,368 + Xcc-8004.449.1 0.56 -0.6 414,368 + Xcc-8004.449.1 0.56 +0.4 414,369 - Xcc-8004.449.1 0.56 +0.6 414,369 - Xcc-8004.449.1 0.56 -1.6 414,464 - Xcc-8004.449.1 0.65 +0.6 414,464 - Xcc-8004.449.1 0.65 -1.3 414,464 - Xcc-8004.449.1 0.65 +1.1 414,496 + Xcc-8004.449.1 0.69 +0.2 414,496 + Xcc-8004.449.1 0.69 -1.1 414,560 + Xcc-8004.449.1 0.75 -0.2 414,561 - Xcc-8004.449.1 0.75 -0.6 414,587 + Xcc-8004.449.1 0.78 +1.0 414,739 + +0.4 414,739 + +0.5 414,739 + -3.1 414,740 - +0.2 414,740 - -0.5 414,827 - +0.2 415,028 - -0.4 415,028 - -1.0 415,037 + -0.2 415,056 + +0.8 415,146 - -2.7 415,146 - -0.3 415,434 - Xcc-8004.451.1 0.19 -1.3 415,649 + Xcc-8004.451.1 0.31 -0.2 415,793 + Xcc-8004.451.1 0.39 -0.8 415,793 + Xcc-8004.451.1 0.39 -2.9 415,793 + Xcc-8004.451.1 0.39 -2.0 415,800 + Xcc-8004.451.1 0.39 -3.3 415,801 - Xcc-8004.451.1 0.39 -1.9 415,801 - Xcc-8004.451.1 0.39 -3.2 415,801 - Xcc-8004.451.1 0.39 -1.9 416,710 + Xcc-8004.451.1 0.89 -2.6 416,710 + Xcc-8004.451.1 0.89 -2.9 416,837 + -1.9 417,021 - -0.3 417,021 - -0.9 417,175 - -1.4 417,309 + -0.0 417,309 + +0.6 417,319 + -1.1 417,319 + -0.3 417,320 - -0.4 417,916 + +0.4 417,916 + +0.1
Or see this region's nucleotide sequence