Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4398.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4396.1 and Xcc-8004.4397.1 overlap by 4 nucleotidesXcc-8004.4397.1 and Xcc-8004.4398.1 are separated by 101 nucleotidesXcc-8004.4398.1 and Xcc-8004.4399.1 are separated by 209 nucleotidesXcc-8004.4399.1 and Xcc-8004.4400.1 are separated by 226 nucleotides Xcc-8004.4396.1: Xcc-8004.4396.1 - N-acetylglutamate synthase (EC 2.3.1.1), at 4,205,461 to 4,205,943 Xcc-8004.4396.1 Xcc-8004.4397.1: Xcc-8004.4397.1 - Ribonucleotide reductase transcriptional regulator NrdR, at 4,205,940 to 4,206,464 Xcc-8004.4397.1 Xcc-8004.4398.1: Xcc-8004.4398.1 - Serine hydroxymethyltransferase (EC 2.1.2.1), at 4,206,566 to 4,207,819 Xcc-8004.4398.1 Xcc-8004.4399.1: Xcc-8004.4399.1 - FIG01209995: hypothetical protein, at 4,208,029 to 4,208,553 Xcc-8004.4399.1 Xcc-8004.4400.1: Xcc-8004.4400.1 - ABC transporter, ATP-binding protein, at 4,208,780 to 4,210,441 Xcc-8004.4400.1 Position (kb) 4206 4207 4208Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4205.579 kb on + strand, within Xcc-8004.4396.1at 4205.579 kb on + strand, within Xcc-8004.4396.1at 4205.579 kb on + strand, within Xcc-8004.4396.1at 4205.580 kb on - strand, within Xcc-8004.4396.1at 4205.580 kb on - strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.586 kb on - strand, within Xcc-8004.4396.1at 4205.586 kb on - strand, within Xcc-8004.4396.1at 4205.586 kb on - strand, within Xcc-8004.4396.1at 4205.586 kb on - strand, within Xcc-8004.4396.1at 4205.586 kb on - strand, within Xcc-8004.4396.1at 4205.586 kb on - strand, within Xcc-8004.4396.1at 4205.586 kb on - strand, within Xcc-8004.4396.1at 4205.678 kb on + strand, within Xcc-8004.4396.1at 4205.679 kb on - strand, within Xcc-8004.4396.1at 4205.679 kb on - strand, within Xcc-8004.4396.1at 4205.679 kb on - strand, within Xcc-8004.4396.1at 4206.516 kb on - strandat 4206.532 kb on + strandat 4206.533 kb on - strandat 4206.574 kb on - strandat 4206.574 kb on - strandat 4206.574 kb on - strandat 4206.574 kb on - strandat 4206.574 kb on - strandat 4206.574 kb on - strandat 4206.582 kb on + strandat 4206.582 kb on + strandat 4206.713 kb on - strand, within Xcc-8004.4398.1at 4206.713 kb on - strand, within Xcc-8004.4398.1at 4206.901 kb on - strand, within Xcc-8004.4398.1at 4206.901 kb on - strand, within Xcc-8004.4398.1at 4206.960 kb on + strand, within Xcc-8004.4398.1at 4206.960 kb on + strand, within Xcc-8004.4398.1at 4206.960 kb on + strand, within Xcc-8004.4398.1at 4206.960 kb on + strand, within Xcc-8004.4398.1at 4206.961 kb on - strand, within Xcc-8004.4398.1at 4206.961 kb on - strand, within Xcc-8004.4398.1at 4207.182 kb on + strand, within Xcc-8004.4398.1at 4207.233 kb on + strand, within Xcc-8004.4398.1at 4207.234 kb on - strand, within Xcc-8004.4398.1at 4207.234 kb on - strand, within Xcc-8004.4398.1at 4207.234 kb on - strand, within Xcc-8004.4398.1at 4207.234 kb on - strand, within Xcc-8004.4398.1at 4207.234 kb on - strand, within Xcc-8004.4398.1at 4207.234 kb on - strand, within Xcc-8004.4398.1at 4207.503 kb on + strand, within Xcc-8004.4398.1at 4207.504 kb on - strand, within Xcc-8004.4398.1at 4207.551 kb on + strand, within Xcc-8004.4398.1at 4207.552 kb on - strand, within Xcc-8004.4398.1at 4207.552 kb on - strand, within Xcc-8004.4398.1at 4207.552 kb on - strand, within Xcc-8004.4398.1at 4207.627 kb on - strand, within Xcc-8004.4398.1at 4207.630 kb on - strand, within Xcc-8004.4398.1at 4207.630 kb on - strand, within Xcc-8004.4398.1at 4207.657 kb on - strand, within Xcc-8004.4398.1at 4207.657 kb on - strand, within Xcc-8004.4398.1at 4207.707 kb on + strandat 4207.708 kb on - strandat 4207.708 kb on - strandat 4207.708 kb on - strandat 4207.708 kb on - strandat 4207.708 kb on - strandat 4207.708 kb on - strandat 4207.708 kb on - strandat 4207.708 kb on - strandat 4207.789 kb on - strandat 4207.789 kb on - strandat 4207.789 kb on - strandat 4207.789 kb on - strandat 4207.850 kb on + strandat 4207.865 kb on + strandat 4207.865 kb on + strandat 4207.865 kb on + strandat 4207.865 kb on + strandat 4207.865 kb on + strandat 4207.865 kb on + strandat 4207.865 kb on + strandat 4207.866 kb on - strandat 4207.866 kb on - strandat 4208.022 kb on + strandat 4208.022 kb on + strandat 4208.022 kb on + strandat 4208.023 kb on - strandat 4208.023 kb on - strandat 4208.120 kb on + strand, within Xcc-8004.4399.1at 4208.120 kb on + strand, within Xcc-8004.4399.1at 4208.121 kb on - strand, within Xcc-8004.4399.1at 4208.150 kb on + strand, within Xcc-8004.4399.1at 4208.150 kb on + strand, within Xcc-8004.4399.1at 4208.151 kb on - strand, within Xcc-8004.4399.1at 4208.165 kb on + strand, within Xcc-8004.4399.1at 4208.165 kb on + strand, within Xcc-8004.4399.1at 4208.165 kb on + strand, within Xcc-8004.4399.1at 4208.165 kb on + strand, within Xcc-8004.4399.1at 4208.166 kb on - strand, within Xcc-8004.4399.1at 4208.166 kb on - strand, within Xcc-8004.4399.1at 4208.166 kb on - strand, within Xcc-8004.4399.1at 4208.166 kb on - strand, within Xcc-8004.4399.1at 4208.166 kb on - strand, within Xcc-8004.4399.1at 4208.166 kb on - strand, within Xcc-8004.4399.1at 4208.166 kb on - strand, within Xcc-8004.4399.1at 4208.166 kb on - strand, within Xcc-8004.4399.1at 4208.166 kb on - strand, within Xcc-8004.4399.1at 4208.180 kb on + strand, within Xcc-8004.4399.1at 4208.180 kb on + strand, within Xcc-8004.4399.1at 4208.180 kb on + strand, within Xcc-8004.4399.1at 4208.180 kb on + strand, within Xcc-8004.4399.1at 4208.181 kb on - strand, within Xcc-8004.4399.1at 4208.181 kb on - strand, within Xcc-8004.4399.1at 4208.181 kb on - strand, within Xcc-8004.4399.1at 4208.181 kb on - strand, within Xcc-8004.4399.1at 4208.181 kb on - strand, within Xcc-8004.4399.1at 4208.181 kb on - strand, within Xcc-8004.4399.1at 4208.184 kb on - strand, within Xcc-8004.4399.1at 4208.184 kb on - strand, within Xcc-8004.4399.1at 4208.198 kb on + strand, within Xcc-8004.4399.1at 4208.199 kb on - strand, within Xcc-8004.4399.1at 4208.199 kb on - strand, within Xcc-8004.4399.1at 4208.199 kb on - strand, within Xcc-8004.4399.1at 4208.199 kb on - strand, within Xcc-8004.4399.1at 4208.213 kb on + strand, within Xcc-8004.4399.1at 4208.214 kb on - strand, within Xcc-8004.4399.1at 4208.214 kb on - strand, within Xcc-8004.4399.1at 4208.214 kb on - strand, within Xcc-8004.4399.1at 4208.216 kb on + strand, within Xcc-8004.4399.1at 4208.237 kb on + strand, within Xcc-8004.4399.1at 4208.237 kb on + strand, within Xcc-8004.4399.1at 4208.237 kb on + strand, within Xcc-8004.4399.1at 4208.238 kb on - strand, within Xcc-8004.4399.1at 4208.238 kb on - strand, within Xcc-8004.4399.1at 4208.243 kb on + strand, within Xcc-8004.4399.1at 4208.243 kb on + strand, within Xcc-8004.4399.1at 4208.243 kb on + strand, within Xcc-8004.4399.1at 4208.244 kb on - strand, within Xcc-8004.4399.1at 4208.244 kb on - strand, within Xcc-8004.4399.1at 4208.261 kb on + strand, within Xcc-8004.4399.1at 4208.261 kb on + strand, within Xcc-8004.4399.1at 4208.288 kb on + strand, within Xcc-8004.4399.1at 4208.288 kb on + strand, within Xcc-8004.4399.1at 4208.312 kb on + strand, within Xcc-8004.4399.1at 4208.312 kb on + strand, within Xcc-8004.4399.1at 4208.313 kb on - strand, within Xcc-8004.4399.1at 4208.411 kb on + strand, within Xcc-8004.4399.1at 4208.411 kb on + strand, within Xcc-8004.4399.1at 4208.411 kb on + strand, within Xcc-8004.4399.1at 4208.412 kb on - strand, within Xcc-8004.4399.1at 4208.412 kb on - strand, within Xcc-8004.4399.1at 4208.588 kb on + strandat 4208.588 kb on + strandat 4208.588 kb on + strandat 4208.589 kb on - strandat 4208.589 kb on - strandat 4208.589 kb on - strandat 4208.589 kb on - strandat 4208.589 kb on - strandat 4208.656 kb on + strandat 4208.656 kb on + strandat 4208.656 kb on + strandat 4208.656 kb on + strandat 4208.656 kb on + strandat 4208.657 kb on - strandat 4208.657 kb on - strandat 4208.657 kb on - strandat 4208.698 kb on + strandat 4208.698 kb on + strandat 4208.698 kb on + strandat 4208.698 kb on + strandat 4208.698 kb on + strandat 4208.698 kb on + strandat 4208.699 kb on - strandat 4208.699 kb on - strandat 4208.699 kb on - strandat 4208.699 kb on - strandat 4208.708 kb on + strandat 4208.708 kb on + strandat 4208.709 kb on - strandat 4208.709 kb on - strandat 4208.709 kb on - strandat 4208.710 kb on + strandat 4208.711 kb on - strandat 4208.711 kb on - strandat 4208.789 kb on + strandat 4208.789 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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4,205,579 + Xcc-8004.4396.1 0.24 +0.7
4,205,579 + Xcc-8004.4396.1 0.24 -0.8
4,205,579 + Xcc-8004.4396.1 0.24 -0.5
4,205,580 - Xcc-8004.4396.1 0.25 -1.0
4,205,580 - Xcc-8004.4396.1 0.25 +0.4
4,205,585 + Xcc-8004.4396.1 0.26 -0.1
4,205,585 + Xcc-8004.4396.1 0.26 +0.2
4,205,585 + Xcc-8004.4396.1 0.26 -0.2
4,205,585 + Xcc-8004.4396.1 0.26 -0.5
4,205,585 + Xcc-8004.4396.1 0.26 +0.4
4,205,585 + Xcc-8004.4396.1 0.26 -0.7
4,205,585 + Xcc-8004.4396.1 0.26 -0.4
4,205,585 + Xcc-8004.4396.1 0.26 -0.2
4,205,585 + Xcc-8004.4396.1 0.26 +0.0
4,205,585 + Xcc-8004.4396.1 0.26 +0.3
4,205,585 + Xcc-8004.4396.1 0.26 -1.0
4,205,585 + Xcc-8004.4396.1 0.26 -1.0
4,205,585 + Xcc-8004.4396.1 0.26 +0.1
4,205,586 - Xcc-8004.4396.1 0.26 +0.2
4,205,586 - Xcc-8004.4396.1 0.26 -0.4
4,205,586 - Xcc-8004.4396.1 0.26 +0.3
4,205,586 - Xcc-8004.4396.1 0.26 -0.2
4,205,586 - Xcc-8004.4396.1 0.26 +0.9
4,205,586 - Xcc-8004.4396.1 0.26 -0.7
4,205,586 - Xcc-8004.4396.1 0.26 -0.2
4,205,678 + Xcc-8004.4396.1 0.45 -2.0
4,205,679 - Xcc-8004.4396.1 0.45 -0.3
4,205,679 - Xcc-8004.4396.1 0.45 +1.0
4,205,679 - Xcc-8004.4396.1 0.45 -0.9
4,206,516 - -0.7
4,206,532 + +1.7
4,206,533 - +0.3
4,206,574 - -3.7
4,206,574 - -0.3
4,206,574 - -0.5
4,206,574 - -2.9
4,206,574 - -0.3
4,206,574 - -0.4
4,206,582 + -1.4
4,206,582 + -0.3
4,206,713 - Xcc-8004.4398.1 0.12 -2.5
4,206,713 - Xcc-8004.4398.1 0.12 -2.4
4,206,901 - Xcc-8004.4398.1 0.27 -2.7
4,206,901 - Xcc-8004.4398.1 0.27 -2.6
4,206,960 + Xcc-8004.4398.1 0.31 -0.6
4,206,960 + Xcc-8004.4398.1 0.31 -0.3
4,206,960 + Xcc-8004.4398.1 0.31 -1.3
4,206,960 + Xcc-8004.4398.1 0.31 -0.9
4,206,961 - Xcc-8004.4398.1 0.31 -0.7
4,206,961 - Xcc-8004.4398.1 0.31 -3.3
4,207,182 + Xcc-8004.4398.1 0.49 +0.1
4,207,233 + Xcc-8004.4398.1 0.53 -2.1
4,207,234 - Xcc-8004.4398.1 0.53 -1.7
4,207,234 - Xcc-8004.4398.1 0.53 -2.5
4,207,234 - Xcc-8004.4398.1 0.53 -1.9
4,207,234 - Xcc-8004.4398.1 0.53 -1.6
4,207,234 - Xcc-8004.4398.1 0.53 -4.0
4,207,234 - Xcc-8004.4398.1 0.53 -1.9
4,207,503 + Xcc-8004.4398.1 0.75 -2.2
4,207,504 - Xcc-8004.4398.1 0.75 -0.6
4,207,551 + Xcc-8004.4398.1 0.79 -1.5
4,207,552 - Xcc-8004.4398.1 0.79 -0.9
4,207,552 - Xcc-8004.4398.1 0.79 -1.8
4,207,552 - Xcc-8004.4398.1 0.79 -2.0
4,207,627 - Xcc-8004.4398.1 0.85 -4.5
4,207,630 - Xcc-8004.4398.1 0.85 -0.5
4,207,630 - Xcc-8004.4398.1 0.85 -2.2
4,207,657 - Xcc-8004.4398.1 0.87 -2.9
4,207,657 - Xcc-8004.4398.1 0.87 -2.7
4,207,707 + +1.0
4,207,708 - -2.1
4,207,708 - -1.5
4,207,708 - -3.1
4,207,708 - -0.9
4,207,708 - -1.7
4,207,708 - -2.1
4,207,708 - -0.7
4,207,708 - -2.6
4,207,789 - -2.9
4,207,789 - -2.7
4,207,789 - -2.9
4,207,789 - -3.2
4,207,850 + +2.3
4,207,865 + +0.2
4,207,865 + -0.5
4,207,865 + +1.1
4,207,865 + -0.1
4,207,865 + +0.0
4,207,865 + +0.7
4,207,865 + +0.7
4,207,866 - +0.8
4,207,866 - +0.3
4,208,022 + -0.8
4,208,022 + +0.3
4,208,022 + +0.6
4,208,023 - +0.7
4,208,023 - -0.4
4,208,120 + Xcc-8004.4399.1 0.17 -0.2
4,208,120 + Xcc-8004.4399.1 0.17 +0.6
4,208,121 - Xcc-8004.4399.1 0.18 +0.4
4,208,150 + Xcc-8004.4399.1 0.23 +0.4
4,208,150 + Xcc-8004.4399.1 0.23 +0.2
4,208,151 - Xcc-8004.4399.1 0.23 -0.2
4,208,165 + Xcc-8004.4399.1 0.26 -1.7
4,208,165 + Xcc-8004.4399.1 0.26 -0.6
4,208,165 + Xcc-8004.4399.1 0.26 -0.7
4,208,165 + Xcc-8004.4399.1 0.26 +1.3
4,208,166 - Xcc-8004.4399.1 0.26 -1.0
4,208,166 - Xcc-8004.4399.1 0.26 -0.9
4,208,166 - Xcc-8004.4399.1 0.26 -0.4
4,208,166 - Xcc-8004.4399.1 0.26 -0.2
4,208,166 - Xcc-8004.4399.1 0.26 +1.1
4,208,166 - Xcc-8004.4399.1 0.26 +0.6
4,208,166 - Xcc-8004.4399.1 0.26 +1.9
4,208,166 - Xcc-8004.4399.1 0.26 -1.2
4,208,166 - Xcc-8004.4399.1 0.26 -1.0
4,208,180 + Xcc-8004.4399.1 0.29 +0.6
4,208,180 + Xcc-8004.4399.1 0.29 +0.1
4,208,180 + Xcc-8004.4399.1 0.29 +0.1
4,208,180 + Xcc-8004.4399.1 0.29 -0.4
4,208,181 - Xcc-8004.4399.1 0.29 +0.1
4,208,181 - Xcc-8004.4399.1 0.29 -0.2
4,208,181 - Xcc-8004.4399.1 0.29 -2.2
4,208,181 - Xcc-8004.4399.1 0.29 +0.1
4,208,181 - Xcc-8004.4399.1 0.29 +0.3
4,208,181 - Xcc-8004.4399.1 0.29 +1.5
4,208,184 - Xcc-8004.4399.1 0.30 +0.1
4,208,184 - Xcc-8004.4399.1 0.30 -0.6
4,208,198 + Xcc-8004.4399.1 0.32 -1.7
4,208,199 - Xcc-8004.4399.1 0.32 -0.4
4,208,199 - Xcc-8004.4399.1 0.32 -0.0
4,208,199 - Xcc-8004.4399.1 0.32 -1.7
4,208,199 - Xcc-8004.4399.1 0.32 +0.1
4,208,213 + Xcc-8004.4399.1 0.35 +0.5
4,208,214 - Xcc-8004.4399.1 0.35 +0.6
4,208,214 - Xcc-8004.4399.1 0.35 +0.2
4,208,214 - Xcc-8004.4399.1 0.35 +0.7
4,208,216 + Xcc-8004.4399.1 0.36 -0.5
4,208,237 + Xcc-8004.4399.1 0.40 -0.2
4,208,237 + Xcc-8004.4399.1 0.40 +0.5
4,208,237 + Xcc-8004.4399.1 0.40 -0.3
4,208,238 - Xcc-8004.4399.1 0.40 +0.4
4,208,238 - Xcc-8004.4399.1 0.40 -0.6
4,208,243 + Xcc-8004.4399.1 0.41 +1.4
4,208,243 + Xcc-8004.4399.1 0.41 +0.5
4,208,243 + Xcc-8004.4399.1 0.41 +0.4
4,208,244 - Xcc-8004.4399.1 0.41 +0.6
4,208,244 - Xcc-8004.4399.1 0.41 +0.5
4,208,261 + Xcc-8004.4399.1 0.44 -0.1
4,208,261 + Xcc-8004.4399.1 0.44 -0.2
4,208,288 + Xcc-8004.4399.1 0.49 +1.4
4,208,288 + Xcc-8004.4399.1 0.49 +0.6
4,208,312 + Xcc-8004.4399.1 0.54 -0.3
4,208,312 + Xcc-8004.4399.1 0.54 -0.7
4,208,313 - Xcc-8004.4399.1 0.54 -0.3
4,208,411 + Xcc-8004.4399.1 0.73 -0.2
4,208,411 + Xcc-8004.4399.1 0.73 -1.3
4,208,411 + Xcc-8004.4399.1 0.73 +0.7
4,208,412 - Xcc-8004.4399.1 0.73 -0.2
4,208,412 - Xcc-8004.4399.1 0.73 -0.4
4,208,588 + +0.0
4,208,588 + +0.5
4,208,588 + -1.0
4,208,589 - -1.0
4,208,589 - +1.1
4,208,589 - +0.3
4,208,589 - +0.5
4,208,589 - +1.5
4,208,656 + +0.4
4,208,656 + +0.9
4,208,656 + -1.7
4,208,656 + -0.2
4,208,656 + +0.7
4,208,657 - -1.4
4,208,657 - +0.9
4,208,657 - +0.0
4,208,698 + -0.9
4,208,698 + -1.1
4,208,698 + +0.6
4,208,698 + -0.4
4,208,698 + +0.4
4,208,698 + +0.1
4,208,699 - +0.6
4,208,699 - -0.3
4,208,699 - -0.5
4,208,699 - +0.3
4,208,708 + +0.3
4,208,708 + +0.6
4,208,709 - +1.1
4,208,709 - +0.3
4,208,709 - +0.3
4,208,710 + -0.3
4,208,711 - +0.1
4,208,711 - -0.6
4,208,789 + +0.2
4,208,789 + -0.3

Or see this region's nucleotide sequence