Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4336.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4335.1 and Xcc-8004.4336.1 are separated by 68 nucleotidesXcc-8004.4336.1 and Xcc-8004.4337.1 are separated by 32 nucleotidesXcc-8004.4337.1 and Xcc-8004.4338.1 are separated by 240 nucleotides Xcc-8004.4335.1: Xcc-8004.4335.1 - FIG01210530: hypothetical protein, at 4,152,457 to 4,153,755 Xcc-8004.4335.1 Xcc-8004.4336.1: Xcc-8004.4336.1 - 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20), at 4,153,824 to 4,154,681 Xcc-8004.4336.1 Xcc-8004.4337.1: Xcc-8004.4337.1 - FIG01210643: hypothetical protein, at 4,154,714 to 4,155,433 Xcc-8004.4337.1 Xcc-8004.4338.1: Xcc-8004.4338.1 - hypothetical protein, at 4,155,674 to 4,155,784 Xcc-8004.4338.1 Position (kb) 4153 4154 4155Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4152.901 kb on + strand, within Xcc-8004.4335.1at 4152.901 kb on + strand, within Xcc-8004.4335.1at 4152.901 kb on + strand, within Xcc-8004.4335.1at 4152.902 kb on - strand, within Xcc-8004.4335.1at 4153.066 kb on + strand, within Xcc-8004.4335.1at 4153.123 kb on + strand, within Xcc-8004.4335.1at 4153.123 kb on + strand, within Xcc-8004.4335.1at 4153.123 kb on + strand, within Xcc-8004.4335.1at 4153.124 kb on - strand, within Xcc-8004.4335.1at 4153.124 kb on - strand, within Xcc-8004.4335.1at 4153.124 kb on - strand, within Xcc-8004.4335.1at 4153.257 kb on + strand, within Xcc-8004.4335.1at 4153.325 kb on - strand, within Xcc-8004.4335.1at 4153.528 kb on + strand, within Xcc-8004.4335.1at 4153.529 kb on - strand, within Xcc-8004.4335.1at 4153.541 kb on + strand, within Xcc-8004.4335.1at 4153.541 kb on + strand, within Xcc-8004.4335.1at 4153.541 kb on + strand, within Xcc-8004.4335.1at 4153.541 kb on + strand, within Xcc-8004.4335.1at 4153.541 kb on + strand, within Xcc-8004.4335.1at 4153.541 kb on + strand, within Xcc-8004.4335.1at 4153.541 kb on + strand, within Xcc-8004.4335.1at 4153.541 kb on + strand, within Xcc-8004.4335.1at 4153.675 kb on + strandat 4153.721 kb on - strandat 4153.743 kb on - strandat 4153.753 kb on + strandat 4153.754 kb on - strandat 4153.796 kb on + strandat 4153.796 kb on + strandat 4153.796 kb on + strandat 4153.797 kb on - strandat 4153.797 kb on - strandat 4153.821 kb on - strandat 4153.823 kb on + strandat 4153.878 kb on + strandat 4153.879 kb on - strandat 4153.941 kb on + strand, within Xcc-8004.4336.1at 4153.942 kb on - strand, within Xcc-8004.4336.1at 4153.953 kb on + strand, within Xcc-8004.4336.1at 4153.953 kb on + strand, within Xcc-8004.4336.1at 4153.953 kb on + strand, within Xcc-8004.4336.1at 4153.953 kb on + strand, within Xcc-8004.4336.1at 4153.954 kb on - strand, within Xcc-8004.4336.1at 4153.954 kb on - strand, within Xcc-8004.4336.1at 4153.954 kb on - strand, within Xcc-8004.4336.1at 4153.995 kb on + strand, within Xcc-8004.4336.1at 4153.995 kb on + strand, within Xcc-8004.4336.1at 4153.995 kb on + strand, within Xcc-8004.4336.1at 4153.995 kb on + strand, within Xcc-8004.4336.1at 4153.996 kb on - strand, within Xcc-8004.4336.1at 4153.996 kb on - strand, within Xcc-8004.4336.1at 4154.056 kb on + strand, within Xcc-8004.4336.1at 4154.056 kb on + strand, within Xcc-8004.4336.1at 4154.056 kb on + strand, within Xcc-8004.4336.1at 4154.057 kb on - strand, within Xcc-8004.4336.1at 4154.057 kb on - strand, within Xcc-8004.4336.1at 4154.107 kb on - strand, within Xcc-8004.4336.1at 4154.188 kb on - strand, within Xcc-8004.4336.1at 4154.188 kb on - strand, within Xcc-8004.4336.1at 4154.188 kb on - strand, within Xcc-8004.4336.1at 4154.304 kb on + strand, within Xcc-8004.4336.1at 4154.305 kb on - strand, within Xcc-8004.4336.1at 4154.305 kb on - strand, within Xcc-8004.4336.1at 4154.352 kb on + strand, within Xcc-8004.4336.1at 4154.352 kb on + strand, within Xcc-8004.4336.1at 4154.353 kb on - strand, within Xcc-8004.4336.1at 4154.353 kb on - strand, within Xcc-8004.4336.1at 4154.353 kb on - strand, within Xcc-8004.4336.1at 4154.358 kb on + strand, within Xcc-8004.4336.1at 4154.358 kb on + strand, within Xcc-8004.4336.1at 4154.358 kb on + strand, within Xcc-8004.4336.1at 4154.359 kb on - strand, within Xcc-8004.4336.1at 4154.359 kb on - strand, within Xcc-8004.4336.1at 4154.373 kb on + strand, within Xcc-8004.4336.1at 4154.373 kb on + strand, within Xcc-8004.4336.1at 4154.373 kb on + strand, within Xcc-8004.4336.1at 4154.374 kb on - strand, within Xcc-8004.4336.1at 4154.374 kb on - strand, within Xcc-8004.4336.1at 4154.526 kb on + strand, within Xcc-8004.4336.1at 4154.527 kb on - strand, within Xcc-8004.4336.1at 4154.625 kb on + strandat 4154.626 kb on - strandat 4154.626 kb on - strandat 4154.626 kb on - strandat 4154.811 kb on + strand, within Xcc-8004.4337.1at 4154.812 kb on - strand, within Xcc-8004.4337.1at 4154.819 kb on + strand, within Xcc-8004.4337.1at 4154.820 kb on - strand, within Xcc-8004.4337.1at 4154.964 kb on + strand, within Xcc-8004.4337.1at 4154.965 kb on - strand, within Xcc-8004.4337.1at 4155.020 kb on + strand, within Xcc-8004.4337.1at 4155.021 kb on - strand, within Xcc-8004.4337.1at 4155.021 kb on - strand, within Xcc-8004.4337.1at 4155.021 kb on - strand, within Xcc-8004.4337.1at 4155.021 kb on - strand, within Xcc-8004.4337.1at 4155.021 kb on - strand, within Xcc-8004.4337.1at 4155.113 kb on + strand, within Xcc-8004.4337.1at 4155.113 kb on + strand, within Xcc-8004.4337.1at 4155.114 kb on - strand, within Xcc-8004.4337.1at 4155.114 kb on - strand, within Xcc-8004.4337.1at 4155.210 kb on - strand, within Xcc-8004.4337.1at 4155.210 kb on - strand, within Xcc-8004.4337.1at 4155.210 kb on - strand, within Xcc-8004.4337.1at 4155.407 kb on + strandat 4155.407 kb on + strandat 4155.408 kb on - strandat 4155.408 kb on - strandat 4155.408 kb on - strandat 4155.432 kb on - strandat 4155.432 kb on - strandat 4155.432 kb on - strandat 4155.432 kb on - strandat 4155.511 kb on + strandat 4155.675 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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4,152,901 + Xcc-8004.4335.1 0.34 -0.0
4,152,901 + Xcc-8004.4335.1 0.34 +0.9
4,152,901 + Xcc-8004.4335.1 0.34 -0.3
4,152,902 - Xcc-8004.4335.1 0.34 -0.1
4,153,066 + Xcc-8004.4335.1 0.47 -2.5
4,153,123 + Xcc-8004.4335.1 0.51 -1.2
4,153,123 + Xcc-8004.4335.1 0.51 +0.3
4,153,123 + Xcc-8004.4335.1 0.51 -0.3
4,153,124 - Xcc-8004.4335.1 0.51 -0.1
4,153,124 - Xcc-8004.4335.1 0.51 +1.1
4,153,124 - Xcc-8004.4335.1 0.51 +0.5
4,153,257 + Xcc-8004.4335.1 0.62 +0.9
4,153,325 - Xcc-8004.4335.1 0.67 -0.9
4,153,528 + Xcc-8004.4335.1 0.82 -0.2
4,153,529 - Xcc-8004.4335.1 0.83 +0.3
4,153,541 + Xcc-8004.4335.1 0.83 -0.4
4,153,541 + Xcc-8004.4335.1 0.83 -0.0
4,153,541 + Xcc-8004.4335.1 0.83 -0.9
4,153,541 + Xcc-8004.4335.1 0.83 -1.3
4,153,541 + Xcc-8004.4335.1 0.83 +0.4
4,153,541 + Xcc-8004.4335.1 0.83 -0.6
4,153,541 + Xcc-8004.4335.1 0.83 -0.1
4,153,541 + Xcc-8004.4335.1 0.83 +0.3
4,153,675 + -0.1
4,153,721 - -0.3
4,153,743 - -0.6
4,153,753 + -0.6
4,153,754 - +0.9
4,153,796 + +0.2
4,153,796 + -0.6
4,153,796 + -0.1
4,153,797 - +0.4
4,153,797 - +1.2
4,153,821 - -1.3
4,153,823 + +1.9
4,153,878 + -1.7
4,153,879 - -0.1
4,153,941 + Xcc-8004.4336.1 0.14 -1.2
4,153,942 - Xcc-8004.4336.1 0.14 +0.1
4,153,953 + Xcc-8004.4336.1 0.15 -0.6
4,153,953 + Xcc-8004.4336.1 0.15 -0.7
4,153,953 + Xcc-8004.4336.1 0.15 -2.7
4,153,953 + Xcc-8004.4336.1 0.15 -2.3
4,153,954 - Xcc-8004.4336.1 0.15 -0.4
4,153,954 - Xcc-8004.4336.1 0.15 -2.3
4,153,954 - Xcc-8004.4336.1 0.15 -2.8
4,153,995 + Xcc-8004.4336.1 0.20 -0.4
4,153,995 + Xcc-8004.4336.1 0.20 -1.4
4,153,995 + Xcc-8004.4336.1 0.20 -2.2
4,153,995 + Xcc-8004.4336.1 0.20 -1.9
4,153,996 - Xcc-8004.4336.1 0.20 -1.0
4,153,996 - Xcc-8004.4336.1 0.20 -0.6
4,154,056 + Xcc-8004.4336.1 0.27 -0.4
4,154,056 + Xcc-8004.4336.1 0.27 -2.5
4,154,056 + Xcc-8004.4336.1 0.27 -2.4
4,154,057 - Xcc-8004.4336.1 0.27 +0.6
4,154,057 - Xcc-8004.4336.1 0.27 -0.4
4,154,107 - Xcc-8004.4336.1 0.33 -2.6
4,154,188 - Xcc-8004.4336.1 0.42 -1.4
4,154,188 - Xcc-8004.4336.1 0.42 +0.3
4,154,188 - Xcc-8004.4336.1 0.42 -0.3
4,154,304 + Xcc-8004.4336.1 0.56 -1.1
4,154,305 - Xcc-8004.4336.1 0.56 -1.5
4,154,305 - Xcc-8004.4336.1 0.56 -2.1
4,154,352 + Xcc-8004.4336.1 0.62 -1.0
4,154,352 + Xcc-8004.4336.1 0.62 -0.9
4,154,353 - Xcc-8004.4336.1 0.62 -2.4
4,154,353 - Xcc-8004.4336.1 0.62 -2.9
4,154,353 - Xcc-8004.4336.1 0.62 -0.5
4,154,358 + Xcc-8004.4336.1 0.62 -0.2
4,154,358 + Xcc-8004.4336.1 0.62 -0.7
4,154,358 + Xcc-8004.4336.1 0.62 -0.7
4,154,359 - Xcc-8004.4336.1 0.62 -3.3
4,154,359 - Xcc-8004.4336.1 0.62 -0.4
4,154,373 + Xcc-8004.4336.1 0.64 -1.9
4,154,373 + Xcc-8004.4336.1 0.64 -0.8
4,154,373 + Xcc-8004.4336.1 0.64 +1.3
4,154,374 - Xcc-8004.4336.1 0.64 -1.5
4,154,374 - Xcc-8004.4336.1 0.64 -1.8
4,154,526 + Xcc-8004.4336.1 0.82 -2.1
4,154,527 - Xcc-8004.4336.1 0.82 -0.8
4,154,625 + -1.0
4,154,626 - -2.3
4,154,626 - -2.0
4,154,626 - -0.4
4,154,811 + Xcc-8004.4337.1 0.13 -0.3
4,154,812 - Xcc-8004.4337.1 0.14 +0.3
4,154,819 + Xcc-8004.4337.1 0.15 +0.1
4,154,820 - Xcc-8004.4337.1 0.15 -1.3
4,154,964 + Xcc-8004.4337.1 0.35 -0.7
4,154,965 - Xcc-8004.4337.1 0.35 +0.6
4,155,020 + Xcc-8004.4337.1 0.42 -1.3
4,155,021 - Xcc-8004.4337.1 0.43 -0.1
4,155,021 - Xcc-8004.4337.1 0.43 +0.1
4,155,021 - Xcc-8004.4337.1 0.43 +0.1
4,155,021 - Xcc-8004.4337.1 0.43 -0.7
4,155,021 - Xcc-8004.4337.1 0.43 -0.2
4,155,113 + Xcc-8004.4337.1 0.55 -0.5
4,155,113 + Xcc-8004.4337.1 0.55 -1.1
4,155,114 - Xcc-8004.4337.1 0.56 +0.8
4,155,114 - Xcc-8004.4337.1 0.56 +0.4
4,155,210 - Xcc-8004.4337.1 0.69 -1.4
4,155,210 - Xcc-8004.4337.1 0.69 +0.4
4,155,210 - Xcc-8004.4337.1 0.69 -0.4
4,155,407 + +0.5
4,155,407 + -0.7
4,155,408 - -0.7
4,155,408 - -0.7
4,155,408 - +1.1
4,155,432 - -1.3
4,155,432 - -0.5
4,155,432 - -0.0
4,155,432 - -1.1
4,155,511 + +0.0
4,155,675 + -0.1

Or see this region's nucleotide sequence