Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4312.1 and Xcc-8004.4313.1 overlap by 4 nucleotides Xcc-8004.4313.1 and Xcc-8004.4314.1 are separated by 23 nucleotides Xcc-8004.4314.1 and Xcc-8004.4315.1 are separated by 277 nucleotides
Xcc-8004.4312.1: Xcc-8004.4312.1 - putative membrane protein, at 4,132,943 to 4,133,986
Xcc-8004.4312.1
Xcc-8004.4313.1: Xcc-8004.4313.1 - hypothetical protein, at 4,133,983 to 4,134,612
Xcc-8004.4313.1
Xcc-8004.4314.1: Xcc-8004.4314.1 - Phosphoenolpyruvate carboxylase (EC 4.1.1.31), at 4,134,636 to 4,137,350
Xcc-8004.4314.1
Xcc-8004.4315.1: Xcc-8004.4315.1 - Dipeptidyl aminopeptidases/acylaminoacyl-peptidases, at 4,137,628 to 4,140,135
Xcc-8004.4315.1
Position (kb) 4134
4135
4136
4137
4138 Strain fitness (log2 ratio) -2
-1
0
1 at 4133.899 kb on - strand at 4134.173 kb on - strand, within Xcc-8004.4313.1 at 4134.173 kb on - strand, within Xcc-8004.4313.1 at 4134.460 kb on + strand, within Xcc-8004.4313.1 at 4134.461 kb on - strand, within Xcc-8004.4313.1 at 4134.772 kb on + strand at 4134.772 kb on + strand at 4134.773 kb on - strand at 4134.961 kb on - strand, within Xcc-8004.4314.1 at 4135.078 kb on + strand, within Xcc-8004.4314.1 at 4135.234 kb on + strand, within Xcc-8004.4314.1 at 4135.235 kb on - strand, within Xcc-8004.4314.1 at 4135.396 kb on - strand, within Xcc-8004.4314.1 at 4135.417 kb on + strand, within Xcc-8004.4314.1 at 4135.417 kb on + strand, within Xcc-8004.4314.1 at 4135.418 kb on - strand, within Xcc-8004.4314.1 at 4135.708 kb on + strand, within Xcc-8004.4314.1 at 4135.708 kb on + strand, within Xcc-8004.4314.1 at 4135.709 kb on - strand, within Xcc-8004.4314.1 at 4135.888 kb on + strand, within Xcc-8004.4314.1 at 4135.889 kb on - strand, within Xcc-8004.4314.1 at 4135.889 kb on - strand, within Xcc-8004.4314.1 at 4136.008 kb on + strand, within Xcc-8004.4314.1 at 4136.009 kb on - strand, within Xcc-8004.4314.1 at 4136.009 kb on - strand, within Xcc-8004.4314.1 at 4136.650 kb on + strand, within Xcc-8004.4314.1 at 4136.650 kb on + strand, within Xcc-8004.4314.1 at 4136.650 kb on + strand, within Xcc-8004.4314.1 at 4136.650 kb on + strand, within Xcc-8004.4314.1 at 4136.650 kb on + strand, within Xcc-8004.4314.1 at 4136.651 kb on - strand, within Xcc-8004.4314.1 at 4136.651 kb on - strand, within Xcc-8004.4314.1 at 4136.651 kb on - strand, within Xcc-8004.4314.1 at 4136.651 kb on - strand, within Xcc-8004.4314.1 at 4136.689 kb on + strand, within Xcc-8004.4314.1 at 4136.689 kb on + strand, within Xcc-8004.4314.1 at 4136.690 kb on - strand, within Xcc-8004.4314.1 at 4136.690 kb on - strand, within Xcc-8004.4314.1 at 4136.690 kb on - strand, within Xcc-8004.4314.1 at 4137.037 kb on + strand, within Xcc-8004.4314.1 at 4137.094 kb on + strand at 4137.094 kb on + strand at 4137.094 kb on + strand at 4137.094 kb on + strand at 4137.095 kb on - strand at 4137.095 kb on - strand at 4137.098 kb on + strand at 4137.098 kb on + strand at 4137.406 kb on + strand at 4137.478 kb on - strand at 4137.540 kb on + strand at 4137.541 kb on - strand at 4137.732 kb on - strand at 4137.887 kb on + strand, within Xcc-8004.4315.1 at 4137.887 kb on + strand, within Xcc-8004.4315.1 at 4137.888 kb on - strand, within Xcc-8004.4315.1 at 4137.888 kb on - strand, within Xcc-8004.4315.1 at 4137.888 kb on - strand, within Xcc-8004.4315.1 at 4137.911 kb on + strand, within Xcc-8004.4315.1 at 4137.932 kb on + strand, within Xcc-8004.4315.1 at 4137.932 kb on + strand, within Xcc-8004.4315.1 at 4137.981 kb on - strand, within Xcc-8004.4315.1 at 4138.056 kb on - strand, within Xcc-8004.4315.1 at 4138.127 kb on + strand, within Xcc-8004.4315.1 at 4138.154 kb on + strand, within Xcc-8004.4315.1 at 4138.155 kb on - strand, within Xcc-8004.4315.1 at 4138.220 kb on + strand, within Xcc-8004.4315.1 at 4138.254 kb on - strand, within Xcc-8004.4315.1 at 4138.254 kb on - strand, within Xcc-8004.4315.1 at 4138.274 kb on + strand, within Xcc-8004.4315.1 at 4138.274 kb on + strand, within Xcc-8004.4315.1
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 4,133,899 - -0.0 4,134,173 - Xcc-8004.4313.1 0.30 -0.7 4,134,173 - Xcc-8004.4313.1 0.30 -1.2 4,134,460 + Xcc-8004.4313.1 0.76 -0.1 4,134,461 - Xcc-8004.4313.1 0.76 +0.1 4,134,772 + -1.1 4,134,772 + -0.7 4,134,773 - -0.3 4,134,961 - Xcc-8004.4314.1 0.12 -1.9 4,135,078 + Xcc-8004.4314.1 0.16 -0.8 4,135,234 + Xcc-8004.4314.1 0.22 -0.8 4,135,235 - Xcc-8004.4314.1 0.22 -0.9 4,135,396 - Xcc-8004.4314.1 0.28 +0.1 4,135,417 + Xcc-8004.4314.1 0.29 -0.9 4,135,417 + Xcc-8004.4314.1 0.29 +0.6 4,135,418 - Xcc-8004.4314.1 0.29 -0.1 4,135,708 + Xcc-8004.4314.1 0.39 -1.2 4,135,708 + Xcc-8004.4314.1 0.39 -0.6 4,135,709 - Xcc-8004.4314.1 0.40 -1.9 4,135,888 + Xcc-8004.4314.1 0.46 -0.6 4,135,889 - Xcc-8004.4314.1 0.46 -1.4 4,135,889 - Xcc-8004.4314.1 0.46 -0.3 4,136,008 + Xcc-8004.4314.1 0.51 -2.4 4,136,009 - Xcc-8004.4314.1 0.51 -0.7 4,136,009 - Xcc-8004.4314.1 0.51 -2.7 4,136,650 + Xcc-8004.4314.1 0.74 -0.9 4,136,650 + Xcc-8004.4314.1 0.74 -0.1 4,136,650 + Xcc-8004.4314.1 0.74 -1.3 4,136,650 + Xcc-8004.4314.1 0.74 -1.4 4,136,650 + Xcc-8004.4314.1 0.74 -0.8 4,136,651 - Xcc-8004.4314.1 0.74 -1.2 4,136,651 - Xcc-8004.4314.1 0.74 -1.6 4,136,651 - Xcc-8004.4314.1 0.74 -2.5 4,136,651 - Xcc-8004.4314.1 0.74 -0.9 4,136,689 + Xcc-8004.4314.1 0.76 -1.9 4,136,689 + Xcc-8004.4314.1 0.76 -1.2 4,136,690 - Xcc-8004.4314.1 0.76 +0.2 4,136,690 - Xcc-8004.4314.1 0.76 -1.3 4,136,690 - Xcc-8004.4314.1 0.76 -0.8 4,137,037 + Xcc-8004.4314.1 0.88 -2.0 4,137,094 + -0.6 4,137,094 + +0.4 4,137,094 + -1.5 4,137,094 + -1.1 4,137,095 - -1.4 4,137,095 - -1.2 4,137,098 + -0.7 4,137,098 + -1.1 4,137,406 + +0.2 4,137,478 - +0.7 4,137,540 + +0.4 4,137,541 - -0.7 4,137,732 - +0.7 4,137,887 + Xcc-8004.4315.1 0.10 -1.6 4,137,887 + Xcc-8004.4315.1 0.10 -0.8 4,137,888 - Xcc-8004.4315.1 0.10 +0.1 4,137,888 - Xcc-8004.4315.1 0.10 -0.7 4,137,888 - Xcc-8004.4315.1 0.10 -0.3 4,137,911 + Xcc-8004.4315.1 0.11 -2.2 4,137,932 + Xcc-8004.4315.1 0.12 -0.6 4,137,932 + Xcc-8004.4315.1 0.12 +0.4 4,137,981 - Xcc-8004.4315.1 0.14 -0.9 4,138,056 - Xcc-8004.4315.1 0.17 +0.3 4,138,127 + Xcc-8004.4315.1 0.20 +0.3 4,138,154 + Xcc-8004.4315.1 0.21 -0.3 4,138,155 - Xcc-8004.4315.1 0.21 -0.2 4,138,220 + Xcc-8004.4315.1 0.24 -1.2 4,138,254 - Xcc-8004.4315.1 0.25 -0.7 4,138,254 - Xcc-8004.4315.1 0.25 -2.0 4,138,274 + Xcc-8004.4315.1 0.26 +1.4 4,138,274 + Xcc-8004.4315.1 0.26 -0.5
Or see this region's nucleotide sequence