Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4112.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
3,968,709	+		Xcc-8004.4111.1	0.36	-1.5
3,968,726	+		Xcc-8004.4111.1	0.37	-0.1
3,968,727	-		Xcc-8004.4111.1	0.37	-1.0
3,968,727	-		Xcc-8004.4111.1	0.37	-1.8
3,968,727	-		Xcc-8004.4111.1	0.37	-0.3
3,968,840	+		Xcc-8004.4111.1	0.45	+0.3
3,968,870	+		Xcc-8004.4111.1	0.47	+0.9
3,968,870	+		Xcc-8004.4111.1	0.47	-0.8
3,968,871	-		Xcc-8004.4111.1	0.47	-1.6
3,968,871	-		Xcc-8004.4111.1	0.47	-0.6
3,968,894	+		Xcc-8004.4111.1	0.49	-2.1
3,968,894	+		Xcc-8004.4111.1	0.49	+0.0
3,968,894	+		Xcc-8004.4111.1	0.49	+0.2
3,968,964	-		Xcc-8004.4111.1	0.53	-1.8
3,968,964	-		Xcc-8004.4111.1	0.53	+0.7
3,969,221	+		Xcc-8004.4111.1	0.71	+0.4
3,969,498	-				+1.6
3,969,498	-				+0.9
3,969,593	+				+0.9
3,969,674	-				+0.7
3,969,937	+		Xcc-8004.4112.1	0.59	+0.7
3,969,938	-		Xcc-8004.4112.1	0.59	-2.3
3,969,938	-		Xcc-8004.4112.1	0.59	-0.6
3,969,938	-		Xcc-8004.4112.1	0.59	-0.8
3,969,972	+		Xcc-8004.4112.1	0.65	-0.3
3,969,972	+		Xcc-8004.4112.1	0.65	+0.2
3,969,972	+		Xcc-8004.4112.1	0.65	-1.3
3,969,973	-		Xcc-8004.4112.1	0.66	-1.3
3,969,973	-		Xcc-8004.4112.1	0.66	-1.6
3,969,973	-		Xcc-8004.4112.1	0.66	-0.8
3,969,973	-		Xcc-8004.4112.1	0.66	-0.8
3,969,973	-		Xcc-8004.4112.1	0.66	-2.3
3,969,973	-		Xcc-8004.4112.1	0.66	-1.2
3,970,069	+		Xcc-8004.4112.1	0.84	-0.8
3,970,069	+		Xcc-8004.4112.1	0.84	+0.7
3,970,069	+		Xcc-8004.4112.1	0.84	-2.5
3,970,078	+		Xcc-8004.4112.1	0.86	-0.3
3,970,184	+				-1.3
3,970,186	+				-1.2
3,970,255	+				+0.1
3,970,255	+				+0.3
3,970,366	+				-1.2
3,970,367	-				+0.5
3,970,384	-				-0.2
3,970,384	-				+1.7
3,970,384	-				-0.3
3,970,384	-				-1.0
3,970,399	+				+0.7
3,970,399	+				+0.6
3,970,399	+				+1.2
3,970,399	+				+0.7
3,970,399	+				-1.0
3,970,400	-				-0.1
3,970,400	-				-1.3
3,970,400	-				-0.2
3,970,420	+				-0.3
3,970,437	+				+0.6
3,970,437	+				-2.0
3,970,437	+				-0.4
3,970,437	+				+0.8
3,970,437	+				+0.7
3,970,438	-				-0.1
3,970,477	+				+0.4
3,970,478	-				-1.5
3,970,478	-				+0.0
3,970,478	-				-0.9