Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4086.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4084.1 and Xcc-8004.4085.1 are separated by 7 nucleotidesXcc-8004.4085.1 and Xcc-8004.4086.1 overlap by 4 nucleotidesXcc-8004.4086.1 and Xcc-8004.4087.1 are separated by 9 nucleotides Xcc-8004.4084.1: Xcc-8004.4084.1 - Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25), at 3,943,919 to 3,944,950 Xcc-8004.4084.1 Xcc-8004.4085.1: Xcc-8004.4085.1 - Sulfate transport system permease protein CysW, at 3,944,958 to 3,945,911 Xcc-8004.4085.1 Xcc-8004.4086.1: Xcc-8004.4086.1 - Sulfate transport system permease protein CysT, at 3,945,908 to 3,946,762 Xcc-8004.4086.1 Xcc-8004.4087.1: Xcc-8004.4087.1 - Sulfate and thiosulfate binding protein CysP, at 3,946,772 to 3,947,854 Xcc-8004.4087.1 Position (kb) 3945 3946 3947Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3944.939 kb on - strandat 3944.939 kb on - strandat 3945.007 kb on + strandat 3945.007 kb on + strandat 3945.007 kb on + strandat 3945.007 kb on + strandat 3945.007 kb on + strandat 3945.007 kb on + strandat 3945.008 kb on - strandat 3945.008 kb on - strandat 3945.076 kb on + strand, within Xcc-8004.4085.1at 3945.076 kb on + strand, within Xcc-8004.4085.1at 3945.076 kb on + strand, within Xcc-8004.4085.1at 3945.082 kb on + strand, within Xcc-8004.4085.1at 3945.082 kb on + strand, within Xcc-8004.4085.1at 3945.082 kb on + strand, within Xcc-8004.4085.1at 3945.120 kb on - strand, within Xcc-8004.4085.1at 3945.120 kb on - strand, within Xcc-8004.4085.1at 3945.120 kb on - strand, within Xcc-8004.4085.1at 3945.120 kb on - strand, within Xcc-8004.4085.1at 3945.120 kb on - strand, within Xcc-8004.4085.1at 3945.137 kb on + strand, within Xcc-8004.4085.1at 3945.138 kb on - strand, within Xcc-8004.4085.1at 3945.205 kb on + strand, within Xcc-8004.4085.1at 3945.205 kb on + strand, within Xcc-8004.4085.1at 3945.205 kb on + strand, within Xcc-8004.4085.1at 3945.205 kb on + strand, within Xcc-8004.4085.1at 3945.205 kb on + strand, within Xcc-8004.4085.1at 3945.206 kb on - strand, within Xcc-8004.4085.1at 3945.206 kb on - strand, within Xcc-8004.4085.1at 3945.206 kb on - strand, within Xcc-8004.4085.1at 3945.206 kb on - strand, within Xcc-8004.4085.1at 3945.454 kb on + strand, within Xcc-8004.4085.1at 3945.454 kb on + strand, within Xcc-8004.4085.1at 3945.454 kb on + strand, within Xcc-8004.4085.1at 3945.454 kb on + strand, within Xcc-8004.4085.1at 3945.454 kb on + strand, within Xcc-8004.4085.1at 3945.454 kb on + strand, within Xcc-8004.4085.1at 3945.454 kb on + strand, within Xcc-8004.4085.1at 3945.454 kb on + strand, within Xcc-8004.4085.1at 3945.454 kb on + strand, within Xcc-8004.4085.1at 3945.454 kb on + strand, within Xcc-8004.4085.1at 3945.454 kb on + strand, within Xcc-8004.4085.1at 3945.454 kb on + strand, within Xcc-8004.4085.1at 3945.454 kb on + strand, within Xcc-8004.4085.1at 3945.454 kb on + strand, within Xcc-8004.4085.1at 3945.454 kb on + strand, within Xcc-8004.4085.1at 3945.454 kb on + strand, within Xcc-8004.4085.1at 3945.455 kb on - strand, within Xcc-8004.4085.1at 3945.455 kb on - strand, within Xcc-8004.4085.1at 3945.455 kb on - strand, within Xcc-8004.4085.1at 3945.455 kb on - strand, within Xcc-8004.4085.1at 3945.455 kb on - strand, within Xcc-8004.4085.1at 3945.455 kb on - strand, within Xcc-8004.4085.1at 3945.455 kb on - strand, within Xcc-8004.4085.1at 3945.927 kb on + strandat 3945.952 kb on + strandat 3945.952 kb on + strandat 3945.952 kb on + strandat 3945.952 kb on + strandat 3945.952 kb on + strandat 3945.952 kb on + strandat 3945.953 kb on - strandat 3945.953 kb on - strandat 3945.953 kb on - strandat 3945.953 kb on - strandat 3945.953 kb on - strandat 3946.020 kb on + strand, within Xcc-8004.4086.1at 3946.021 kb on - strand, within Xcc-8004.4086.1at 3946.110 kb on + strand, within Xcc-8004.4086.1at 3946.111 kb on - strand, within Xcc-8004.4086.1at 3946.330 kb on + strand, within Xcc-8004.4086.1at 3946.330 kb on + strand, within Xcc-8004.4086.1at 3946.330 kb on + strand, within Xcc-8004.4086.1at 3946.330 kb on + strand, within Xcc-8004.4086.1at 3946.331 kb on - strand, within Xcc-8004.4086.1at 3946.331 kb on - strand, within Xcc-8004.4086.1at 3946.331 kb on - strand, within Xcc-8004.4086.1at 3946.332 kb on + strand, within Xcc-8004.4086.1at 3946.332 kb on + strand, within Xcc-8004.4086.1at 3946.332 kb on + strand, within Xcc-8004.4086.1at 3946.332 kb on + strand, within Xcc-8004.4086.1at 3946.332 kb on + strand, within Xcc-8004.4086.1at 3946.332 kb on + strand, within Xcc-8004.4086.1at 3946.332 kb on + strand, within Xcc-8004.4086.1at 3946.333 kb on - strand, within Xcc-8004.4086.1at 3946.333 kb on - strand, within Xcc-8004.4086.1at 3946.333 kb on - strand, within Xcc-8004.4086.1at 3946.333 kb on - strand, within Xcc-8004.4086.1at 3946.389 kb on + strand, within Xcc-8004.4086.1at 3946.389 kb on + strand, within Xcc-8004.4086.1at 3946.389 kb on + strand, within Xcc-8004.4086.1at 3946.390 kb on - strand, within Xcc-8004.4086.1at 3946.390 kb on - strand, within Xcc-8004.4086.1at 3946.390 kb on - strand, within Xcc-8004.4086.1at 3946.390 kb on - strand, within Xcc-8004.4086.1at 3946.390 kb on - strand, within Xcc-8004.4086.1at 3946.390 kb on - strand, within Xcc-8004.4086.1at 3946.773 kb on + strandat 3946.773 kb on + strandat 3946.933 kb on - strand, within Xcc-8004.4087.1at 3946.933 kb on - strand, within Xcc-8004.4087.1at 3946.933 kb on - strand, within Xcc-8004.4087.1at 3946.971 kb on + strand, within Xcc-8004.4087.1at 3946.971 kb on + strand, within Xcc-8004.4087.1at 3946.972 kb on - strand, within Xcc-8004.4087.1at 3946.972 kb on - strand, within Xcc-8004.4087.1at 3946.986 kb on + strand, within Xcc-8004.4087.1at 3946.986 kb on + strand, within Xcc-8004.4087.1at 3946.987 kb on - strand, within Xcc-8004.4087.1at 3946.987 kb on - strand, within Xcc-8004.4087.1at 3946.987 kb on - strand, within Xcc-8004.4087.1at 3946.987 kb on - strand, within Xcc-8004.4087.1at 3947.200 kb on + strand, within Xcc-8004.4087.1at 3947.200 kb on + strand, within Xcc-8004.4087.1at 3947.201 kb on - strand, within Xcc-8004.4087.1at 3947.238 kb on + strand, within Xcc-8004.4087.1at 3947.238 kb on + strand, within Xcc-8004.4087.1at 3947.238 kb on + strand, within Xcc-8004.4087.1at 3947.238 kb on + strand, within Xcc-8004.4087.1at 3947.238 kb on + strand, within Xcc-8004.4087.1at 3947.239 kb on - strand, within Xcc-8004.4087.1at 3947.239 kb on - strand, within Xcc-8004.4087.1at 3947.239 kb on - strand, within Xcc-8004.4087.1at 3947.301 kb on + strand, within Xcc-8004.4087.1at 3947.301 kb on + strand, within Xcc-8004.4087.1at 3947.302 kb on - strand, within Xcc-8004.4087.1at 3947.302 kb on - strand, within Xcc-8004.4087.1at 3947.302 kb on - strand, within Xcc-8004.4087.1at 3947.433 kb on + strand, within Xcc-8004.4087.1at 3947.433 kb on + strand, within Xcc-8004.4087.1at 3947.433 kb on + strand, within Xcc-8004.4087.1at 3947.433 kb on + strand, within Xcc-8004.4087.1at 3947.434 kb on - strand, within Xcc-8004.4087.1at 3947.515 kb on - strand, within Xcc-8004.4087.1at 3947.658 kb on + strand, within Xcc-8004.4087.1at 3947.658 kb on + strand, within Xcc-8004.4087.1at 3947.658 kb on + strand, within Xcc-8004.4087.1at 3947.667 kb on + strand, within Xcc-8004.4087.1at 3947.668 kb on - strand, within Xcc-8004.4087.1at 3947.668 kb on - strand, within Xcc-8004.4087.1at 3947.688 kb on + strand, within Xcc-8004.4087.1at 3947.688 kb on + strand, within Xcc-8004.4087.1at 3947.688 kb on + strand, within Xcc-8004.4087.1at 3947.688 kb on + strand, within Xcc-8004.4087.1at 3947.688 kb on + strand, within Xcc-8004.4087.1at 3947.689 kb on - strand, within Xcc-8004.4087.1at 3947.689 kb on - strand, within Xcc-8004.4087.1at 3947.689 kb on - strand, within Xcc-8004.4087.1at 3947.689 kb on - strand, within Xcc-8004.4087.1at 3947.689 kb on - strand, within Xcc-8004.4087.1at 3947.689 kb on - strand, within Xcc-8004.4087.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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3,944,939 - -1.4
3,944,939 - -1.4
3,945,007 + -0.8
3,945,007 + -0.8
3,945,007 + +1.2
3,945,007 + -0.2
3,945,007 + -2.0
3,945,007 + -1.3
3,945,008 - -0.4
3,945,008 - -0.6
3,945,076 + Xcc-8004.4085.1 0.12 -2.7
3,945,076 + Xcc-8004.4085.1 0.12 -2.7
3,945,076 + Xcc-8004.4085.1 0.12 -2.2
3,945,082 + Xcc-8004.4085.1 0.13 -1.7
3,945,082 + Xcc-8004.4085.1 0.13 -2.7
3,945,082 + Xcc-8004.4085.1 0.13 -3.5
3,945,120 - Xcc-8004.4085.1 0.17 -0.7
3,945,120 - Xcc-8004.4085.1 0.17 -1.4
3,945,120 - Xcc-8004.4085.1 0.17 -1.3
3,945,120 - Xcc-8004.4085.1 0.17 -1.3
3,945,120 - Xcc-8004.4085.1 0.17 -1.2
3,945,137 + Xcc-8004.4085.1 0.19 -1.9
3,945,138 - Xcc-8004.4085.1 0.19 -1.1
3,945,205 + Xcc-8004.4085.1 0.26 -1.7
3,945,205 + Xcc-8004.4085.1 0.26 -1.8
3,945,205 + Xcc-8004.4085.1 0.26 -3.2
3,945,205 + Xcc-8004.4085.1 0.26 -2.9
3,945,205 + Xcc-8004.4085.1 0.26 -2.8
3,945,206 - Xcc-8004.4085.1 0.26 -1.8
3,945,206 - Xcc-8004.4085.1 0.26 -1.2
3,945,206 - Xcc-8004.4085.1 0.26 -1.1
3,945,206 - Xcc-8004.4085.1 0.26 -1.6
3,945,454 + Xcc-8004.4085.1 0.52 -1.2
3,945,454 + Xcc-8004.4085.1 0.52 -1.8
3,945,454 + Xcc-8004.4085.1 0.52 -0.8
3,945,454 + Xcc-8004.4085.1 0.52 -2.2
3,945,454 + Xcc-8004.4085.1 0.52 -1.6
3,945,454 + Xcc-8004.4085.1 0.52 -1.1
3,945,454 + Xcc-8004.4085.1 0.52 -1.9
3,945,454 + Xcc-8004.4085.1 0.52 +0.2
3,945,454 + Xcc-8004.4085.1 0.52 -2.0
3,945,454 + Xcc-8004.4085.1 0.52 -2.1
3,945,454 + Xcc-8004.4085.1 0.52 +0.2
3,945,454 + Xcc-8004.4085.1 0.52 -2.3
3,945,454 + Xcc-8004.4085.1 0.52 -2.1
3,945,454 + Xcc-8004.4085.1 0.52 -1.5
3,945,454 + Xcc-8004.4085.1 0.52 -2.0
3,945,454 + Xcc-8004.4085.1 0.52 -2.6
3,945,455 - Xcc-8004.4085.1 0.52 -1.1
3,945,455 - Xcc-8004.4085.1 0.52 -0.8
3,945,455 - Xcc-8004.4085.1 0.52 -1.4
3,945,455 - Xcc-8004.4085.1 0.52 +1.7
3,945,455 - Xcc-8004.4085.1 0.52 -2.3
3,945,455 - Xcc-8004.4085.1 0.52 -2.3
3,945,455 - Xcc-8004.4085.1 0.52 -2.5
3,945,927 + -2.3
3,945,952 + -1.4
3,945,952 + -0.4
3,945,952 + -0.8
3,945,952 + -0.7
3,945,952 + +0.2
3,945,952 + -1.2
3,945,953 - -2.0
3,945,953 - -0.3
3,945,953 - -1.4
3,945,953 - -1.7
3,945,953 - -1.5
3,946,020 + Xcc-8004.4086.1 0.13 -3.4
3,946,021 - Xcc-8004.4086.1 0.13 -1.3
3,946,110 + Xcc-8004.4086.1 0.24 -1.7
3,946,111 - Xcc-8004.4086.1 0.24 -3.3
3,946,330 + Xcc-8004.4086.1 0.49 -2.6
3,946,330 + Xcc-8004.4086.1 0.49 -1.6
3,946,330 + Xcc-8004.4086.1 0.49 -2.0
3,946,330 + Xcc-8004.4086.1 0.49 -2.0
3,946,331 - Xcc-8004.4086.1 0.49 -2.3
3,946,331 - Xcc-8004.4086.1 0.49 -1.7
3,946,331 - Xcc-8004.4086.1 0.49 -1.9
3,946,332 + Xcc-8004.4086.1 0.50 -0.3
3,946,332 + Xcc-8004.4086.1 0.50 -0.1
3,946,332 + Xcc-8004.4086.1 0.50 -0.6
3,946,332 + Xcc-8004.4086.1 0.50 -1.3
3,946,332 + Xcc-8004.4086.1 0.50 -2.3
3,946,332 + Xcc-8004.4086.1 0.50 -2.7
3,946,332 + Xcc-8004.4086.1 0.50 -1.6
3,946,333 - Xcc-8004.4086.1 0.50 -1.4
3,946,333 - Xcc-8004.4086.1 0.50 -0.9
3,946,333 - Xcc-8004.4086.1 0.50 -2.4
3,946,333 - Xcc-8004.4086.1 0.50 -2.0
3,946,389 + Xcc-8004.4086.1 0.56 -0.5
3,946,389 + Xcc-8004.4086.1 0.56 -1.6
3,946,389 + Xcc-8004.4086.1 0.56 -1.4
3,946,390 - Xcc-8004.4086.1 0.56 -1.4
3,946,390 - Xcc-8004.4086.1 0.56 -2.4
3,946,390 - Xcc-8004.4086.1 0.56 -1.8
3,946,390 - Xcc-8004.4086.1 0.56 -1.7
3,946,390 - Xcc-8004.4086.1 0.56 -1.9
3,946,390 - Xcc-8004.4086.1 0.56 -0.5
3,946,773 + -2.4
3,946,773 + -3.1
3,946,933 - Xcc-8004.4087.1 0.15 -1.1
3,946,933 - Xcc-8004.4087.1 0.15 -0.7
3,946,933 - Xcc-8004.4087.1 0.15 -1.6
3,946,971 + Xcc-8004.4087.1 0.18 -0.6
3,946,971 + Xcc-8004.4087.1 0.18 -3.4
3,946,972 - Xcc-8004.4087.1 0.18 -3.5
3,946,972 - Xcc-8004.4087.1 0.18 -0.1
3,946,986 + Xcc-8004.4087.1 0.20 -1.4
3,946,986 + Xcc-8004.4087.1 0.20 -1.7
3,946,987 - Xcc-8004.4087.1 0.20 -2.7
3,946,987 - Xcc-8004.4087.1 0.20 -2.9
3,946,987 - Xcc-8004.4087.1 0.20 -0.7
3,946,987 - Xcc-8004.4087.1 0.20 -1.9
3,947,200 + Xcc-8004.4087.1 0.40 -2.5
3,947,200 + Xcc-8004.4087.1 0.40 -4.1
3,947,201 - Xcc-8004.4087.1 0.40 -2.7
3,947,238 + Xcc-8004.4087.1 0.43 -1.6
3,947,238 + Xcc-8004.4087.1 0.43 -2.3
3,947,238 + Xcc-8004.4087.1 0.43 -1.6
3,947,238 + Xcc-8004.4087.1 0.43 -1.6
3,947,238 + Xcc-8004.4087.1 0.43 -0.8
3,947,239 - Xcc-8004.4087.1 0.43 +0.4
3,947,239 - Xcc-8004.4087.1 0.43 -2.6
3,947,239 - Xcc-8004.4087.1 0.43 -0.7
3,947,301 + Xcc-8004.4087.1 0.49 -2.7
3,947,301 + Xcc-8004.4087.1 0.49 -2.0
3,947,302 - Xcc-8004.4087.1 0.49 -0.3
3,947,302 - Xcc-8004.4087.1 0.49 -3.9
3,947,302 - Xcc-8004.4087.1 0.49 -1.9
3,947,433 + Xcc-8004.4087.1 0.61 -0.8
3,947,433 + Xcc-8004.4087.1 0.61 -1.7
3,947,433 + Xcc-8004.4087.1 0.61 -2.6
3,947,433 + Xcc-8004.4087.1 0.61 -1.0
3,947,434 - Xcc-8004.4087.1 0.61 -3.5
3,947,515 - Xcc-8004.4087.1 0.69 -3.6
3,947,658 + Xcc-8004.4087.1 0.82 +0.2
3,947,658 + Xcc-8004.4087.1 0.82 -2.2
3,947,658 + Xcc-8004.4087.1 0.82 -2.6
3,947,667 + Xcc-8004.4087.1 0.83 -0.6
3,947,668 - Xcc-8004.4087.1 0.83 -2.1
3,947,668 - Xcc-8004.4087.1 0.83 -3.0
3,947,688 + Xcc-8004.4087.1 0.85 -2.6
3,947,688 + Xcc-8004.4087.1 0.85 -1.6
3,947,688 + Xcc-8004.4087.1 0.85 -0.4
3,947,688 + Xcc-8004.4087.1 0.85 +0.0
3,947,688 + Xcc-8004.4087.1 0.85 -2.3
3,947,689 - Xcc-8004.4087.1 0.85 -2.2
3,947,689 - Xcc-8004.4087.1 0.85 -1.4
3,947,689 - Xcc-8004.4087.1 0.85 -2.1
3,947,689 - Xcc-8004.4087.1 0.85 -0.8
3,947,689 - Xcc-8004.4087.1 0.85 -1.8
3,947,689 - Xcc-8004.4087.1 0.85 -2.1

Or see this region's nucleotide sequence