Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4064.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4063.1 and Xcc-8004.4064.1 are separated by 54 nucleotidesXcc-8004.4064.1 and Xcc-8004.4065.1 are separated by 57 nucleotides Xcc-8004.4063.1: Xcc-8004.4063.1 - Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3), at 3,918,299 to 3,919,627 Xcc-8004.4063.1 Xcc-8004.4064.1: Xcc-8004.4064.1 - Polyphosphate kinase (EC 2.7.4.1), at 3,919,682 to 3,921,862 Xcc-8004.4064.1 Xcc-8004.4065.1: Xcc-8004.4065.1 - Exopolyphosphatase (EC 3.6.1.11), at 3,921,920 to 3,923,446 Xcc-8004.4065.1 Position (kb) 3919 3920 3921 3922Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3918.873 kb on - strand, within Xcc-8004.4063.1at 3918.990 kb on - strand, within Xcc-8004.4063.1at 3918.990 kb on - strand, within Xcc-8004.4063.1at 3918.990 kb on - strand, within Xcc-8004.4063.1at 3919.099 kb on - strand, within Xcc-8004.4063.1at 3919.252 kb on + strand, within Xcc-8004.4063.1at 3919.303 kb on + strand, within Xcc-8004.4063.1at 3919.304 kb on - strand, within Xcc-8004.4063.1at 3919.427 kb on + strand, within Xcc-8004.4063.1at 3919.428 kb on - strand, within Xcc-8004.4063.1at 3919.428 kb on - strand, within Xcc-8004.4063.1at 3919.628 kb on + strandat 3919.729 kb on + strandat 3919.729 kb on + strandat 3919.730 kb on - strandat 3919.780 kb on + strandat 3919.781 kb on - strandat 3919.781 kb on - strandat 3919.781 kb on - strandat 3919.839 kb on - strandat 3919.956 kb on + strand, within Xcc-8004.4064.1at 3920.097 kb on - strand, within Xcc-8004.4064.1at 3920.202 kb on - strand, within Xcc-8004.4064.1at 3920.492 kb on + strand, within Xcc-8004.4064.1at 3920.529 kb on + strand, within Xcc-8004.4064.1at 3920.529 kb on + strand, within Xcc-8004.4064.1at 3920.529 kb on + strand, within Xcc-8004.4064.1at 3920.529 kb on + strand, within Xcc-8004.4064.1at 3920.530 kb on - strand, within Xcc-8004.4064.1at 3920.688 kb on - strand, within Xcc-8004.4064.1at 3920.732 kb on + strand, within Xcc-8004.4064.1at 3920.733 kb on - strand, within Xcc-8004.4064.1at 3920.733 kb on - strand, within Xcc-8004.4064.1at 3920.733 kb on - strand, within Xcc-8004.4064.1at 3920.762 kb on + strand, within Xcc-8004.4064.1at 3920.763 kb on - strand, within Xcc-8004.4064.1at 3920.763 kb on - strand, within Xcc-8004.4064.1at 3920.763 kb on - strand, within Xcc-8004.4064.1at 3920.930 kb on + strand, within Xcc-8004.4064.1at 3921.007 kb on - strand, within Xcc-8004.4064.1at 3921.089 kb on + strand, within Xcc-8004.4064.1at 3921.089 kb on + strand, within Xcc-8004.4064.1at 3921.104 kb on + strand, within Xcc-8004.4064.1at 3921.105 kb on - strand, within Xcc-8004.4064.1at 3921.105 kb on - strand, within Xcc-8004.4064.1at 3921.164 kb on + strand, within Xcc-8004.4064.1at 3921.164 kb on + strand, within Xcc-8004.4064.1at 3921.164 kb on + strand, within Xcc-8004.4064.1at 3921.165 kb on - strand, within Xcc-8004.4064.1at 3921.188 kb on + strand, within Xcc-8004.4064.1at 3921.188 kb on + strand, within Xcc-8004.4064.1at 3921.189 kb on - strand, within Xcc-8004.4064.1at 3921.212 kb on + strand, within Xcc-8004.4064.1at 3921.213 kb on - strand, within Xcc-8004.4064.1at 3921.344 kb on - strand, within Xcc-8004.4064.1at 3921.458 kb on + strand, within Xcc-8004.4064.1at 3921.458 kb on + strand, within Xcc-8004.4064.1at 3921.458 kb on + strand, within Xcc-8004.4064.1at 3921.459 kb on - strand, within Xcc-8004.4064.1at 3921.459 kb on - strand, within Xcc-8004.4064.1at 3921.459 kb on - strand, within Xcc-8004.4064.1at 3921.460 kb on + strand, within Xcc-8004.4064.1at 3921.586 kb on + strand, within Xcc-8004.4064.1at 3921.587 kb on - strand, within Xcc-8004.4064.1at 3921.587 kb on - strand, within Xcc-8004.4064.1at 3921.587 kb on - strand, within Xcc-8004.4064.1at 3921.587 kb on - strand, within Xcc-8004.4064.1at 3921.596 kb on + strand, within Xcc-8004.4064.1at 3921.596 kb on + strand, within Xcc-8004.4064.1at 3921.629 kb on + strand, within Xcc-8004.4064.1at 3921.629 kb on + strand, within Xcc-8004.4064.1at 3921.629 kb on + strand, within Xcc-8004.4064.1at 3921.629 kb on + strand, within Xcc-8004.4064.1at 3921.629 kb on + strand, within Xcc-8004.4064.1at 3921.629 kb on + strand, within Xcc-8004.4064.1at 3921.630 kb on - strand, within Xcc-8004.4064.1at 3921.630 kb on - strand, within Xcc-8004.4064.1at 3921.743 kb on + strandat 3921.743 kb on + strandat 3921.791 kb on + strandat 3921.791 kb on + strandat 3921.791 kb on + strandat 3921.791 kb on + strandat 3921.791 kb on + strandat 3921.791 kb on + strandat 3921.791 kb on + strandat 3921.792 kb on - strandat 3921.792 kb on - strandat 3921.792 kb on - strandat 3921.984 kb on + strandat 3921.984 kb on + strandat 3921.984 kb on + strandat 3921.984 kb on + strandat 3921.985 kb on - strandat 3922.019 kb on + strandat 3922.138 kb on - strand, within Xcc-8004.4065.1at 3922.267 kb on + strand, within Xcc-8004.4065.1at 3922.307 kb on + strand, within Xcc-8004.4065.1at 3922.308 kb on - strand, within Xcc-8004.4065.1at 3922.445 kb on - strand, within Xcc-8004.4065.1at 3922.445 kb on - strand, within Xcc-8004.4065.1at 3922.453 kb on + strand, within Xcc-8004.4065.1at 3922.550 kb on + strand, within Xcc-8004.4065.1at 3922.550 kb on + strand, within Xcc-8004.4065.1at 3922.551 kb on - strand, within Xcc-8004.4065.1at 3922.551 kb on - strand, within Xcc-8004.4065.1at 3922.551 kb on - strand, within Xcc-8004.4065.1at 3922.844 kb on + strand, within Xcc-8004.4065.1at 3922.844 kb on + strand, within Xcc-8004.4065.1at 3922.845 kb on - strand, within Xcc-8004.4065.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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3,918,873 - Xcc-8004.4063.1 0.43 +0.3
3,918,990 - Xcc-8004.4063.1 0.52 +0.9
3,918,990 - Xcc-8004.4063.1 0.52 -1.2
3,918,990 - Xcc-8004.4063.1 0.52 +0.4
3,919,099 - Xcc-8004.4063.1 0.60 +0.3
3,919,252 + Xcc-8004.4063.1 0.72 -1.7
3,919,303 + Xcc-8004.4063.1 0.76 +0.3
3,919,304 - Xcc-8004.4063.1 0.76 -1.1
3,919,427 + Xcc-8004.4063.1 0.85 +0.5
3,919,428 - Xcc-8004.4063.1 0.85 -0.4
3,919,428 - Xcc-8004.4063.1 0.85 -0.3
3,919,628 + +0.2
3,919,729 + +0.5
3,919,729 + +0.7
3,919,730 - -0.4
3,919,780 + -2.3
3,919,781 - -1.7
3,919,781 - -1.0
3,919,781 - -0.9
3,919,839 - -2.4
3,919,956 + Xcc-8004.4064.1 0.13 -2.7
3,920,097 - Xcc-8004.4064.1 0.19 -1.4
3,920,202 - Xcc-8004.4064.1 0.24 -1.2
3,920,492 + Xcc-8004.4064.1 0.37 -2.7
3,920,529 + Xcc-8004.4064.1 0.39 -1.1
3,920,529 + Xcc-8004.4064.1 0.39 -2.7
3,920,529 + Xcc-8004.4064.1 0.39 -2.5
3,920,529 + Xcc-8004.4064.1 0.39 -1.4
3,920,530 - Xcc-8004.4064.1 0.39 -0.8
3,920,688 - Xcc-8004.4064.1 0.46 -1.9
3,920,732 + Xcc-8004.4064.1 0.48 -2.5
3,920,733 - Xcc-8004.4064.1 0.48 -2.2
3,920,733 - Xcc-8004.4064.1 0.48 -2.9
3,920,733 - Xcc-8004.4064.1 0.48 -1.7
3,920,762 + Xcc-8004.4064.1 0.50 -3.4
3,920,763 - Xcc-8004.4064.1 0.50 -2.1
3,920,763 - Xcc-8004.4064.1 0.50 -2.3
3,920,763 - Xcc-8004.4064.1 0.50 -2.1
3,920,930 + Xcc-8004.4064.1 0.57 -1.8
3,921,007 - Xcc-8004.4064.1 0.61 -2.6
3,921,089 + Xcc-8004.4064.1 0.65 -1.4
3,921,089 + Xcc-8004.4064.1 0.65 -3.6
3,921,104 + Xcc-8004.4064.1 0.65 -3.1
3,921,105 - Xcc-8004.4064.1 0.65 -1.4
3,921,105 - Xcc-8004.4064.1 0.65 -1.4
3,921,164 + Xcc-8004.4064.1 0.68 +1.4
3,921,164 + Xcc-8004.4064.1 0.68 -2.6
3,921,164 + Xcc-8004.4064.1 0.68 -1.3
3,921,165 - Xcc-8004.4064.1 0.68 -2.6
3,921,188 + Xcc-8004.4064.1 0.69 -2.2
3,921,188 + Xcc-8004.4064.1 0.69 -1.8
3,921,189 - Xcc-8004.4064.1 0.69 -1.8
3,921,212 + Xcc-8004.4064.1 0.70 -1.4
3,921,213 - Xcc-8004.4064.1 0.70 -0.5
3,921,344 - Xcc-8004.4064.1 0.76 -1.9
3,921,458 + Xcc-8004.4064.1 0.81 -1.2
3,921,458 + Xcc-8004.4064.1 0.81 -2.1
3,921,458 + Xcc-8004.4064.1 0.81 -3.5
3,921,459 - Xcc-8004.4064.1 0.81 -1.6
3,921,459 - Xcc-8004.4064.1 0.81 -1.3
3,921,459 - Xcc-8004.4064.1 0.81 -2.8
3,921,460 + Xcc-8004.4064.1 0.82 -3.3
3,921,586 + Xcc-8004.4064.1 0.87 -1.5
3,921,587 - Xcc-8004.4064.1 0.87 -0.3
3,921,587 - Xcc-8004.4064.1 0.87 -1.3
3,921,587 - Xcc-8004.4064.1 0.87 -1.8
3,921,587 - Xcc-8004.4064.1 0.87 -3.9
3,921,596 + Xcc-8004.4064.1 0.88 -0.6
3,921,596 + Xcc-8004.4064.1 0.88 -2.7
3,921,629 + Xcc-8004.4064.1 0.89 -2.3
3,921,629 + Xcc-8004.4064.1 0.89 -0.7
3,921,629 + Xcc-8004.4064.1 0.89 -2.3
3,921,629 + Xcc-8004.4064.1 0.89 +0.0
3,921,629 + Xcc-8004.4064.1 0.89 -0.8
3,921,629 + Xcc-8004.4064.1 0.89 -1.2
3,921,630 - Xcc-8004.4064.1 0.89 +0.3
3,921,630 - Xcc-8004.4064.1 0.89 -1.7
3,921,743 + -1.4
3,921,743 + -2.3
3,921,791 + -1.6
3,921,791 + +0.2
3,921,791 + +0.2
3,921,791 + -3.0
3,921,791 + -1.1
3,921,791 + -1.3
3,921,791 + -2.7
3,921,792 - -1.6
3,921,792 - -1.6
3,921,792 - -2.5
3,921,984 + -0.8
3,921,984 + -0.6
3,921,984 + -0.4
3,921,984 + -0.1
3,921,985 - -0.7
3,922,019 + +0.4
3,922,138 - Xcc-8004.4065.1 0.14 -0.8
3,922,267 + Xcc-8004.4065.1 0.23 -1.0
3,922,307 + Xcc-8004.4065.1 0.25 -0.6
3,922,308 - Xcc-8004.4065.1 0.25 -0.3
3,922,445 - Xcc-8004.4065.1 0.34 +0.2
3,922,445 - Xcc-8004.4065.1 0.34 -1.1
3,922,453 + Xcc-8004.4065.1 0.35 +0.0
3,922,550 + Xcc-8004.4065.1 0.41 +0.9
3,922,550 + Xcc-8004.4065.1 0.41 +1.2
3,922,551 - Xcc-8004.4065.1 0.41 -0.5
3,922,551 - Xcc-8004.4065.1 0.41 +0.2
3,922,551 - Xcc-8004.4065.1 0.41 -0.7
3,922,844 + Xcc-8004.4065.1 0.61 +0.5
3,922,844 + Xcc-8004.4065.1 0.61 +1.0
3,922,845 - Xcc-8004.4065.1 0.61 -2.4

Or see this region's nucleotide sequence