Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4046.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4045.1 and Xcc-8004.4046.1 are separated by 115 nucleotidesXcc-8004.4046.1 and Xcc-8004.4047.1 are separated by 144 nucleotides Xcc-8004.4045.1: Xcc-8004.4045.1 - DNA-binding protein HU-beta, at 3,905,262 to 3,905,633 Xcc-8004.4045.1 Xcc-8004.4046.1: Xcc-8004.4046.1 - ATP-dependent protease La (EC 3.4.21.53) Type I, at 3,905,749 to 3,908,220 Xcc-8004.4046.1 Xcc-8004.4047.1: Xcc-8004.4047.1 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 3,908,365 to 3,909,651 Xcc-8004.4047.1 Position (kb) 3905 3906 3907 3908 3909Strain fitness (log2 ratio) -2 -1 0 1 2at 3904.767 kb on + strandat 3904.768 kb on - strandat 3904.807 kb on + strandat 3904.808 kb on - strandat 3904.989 kb on - strandat 3905.173 kb on - strandat 3905.173 kb on - strandat 3905.173 kb on - strandat 3905.617 kb on - strandat 3905.663 kb on - strandat 3905.736 kb on + strandat 3905.751 kb on - strandat 3905.779 kb on - strandat 3905.801 kb on - strandat 3906.443 kb on + strand, within Xcc-8004.4046.1at 3906.443 kb on + strand, within Xcc-8004.4046.1at 3906.443 kb on + strand, within Xcc-8004.4046.1at 3906.443 kb on + strand, within Xcc-8004.4046.1at 3906.443 kb on + strand, within Xcc-8004.4046.1at 3906.443 kb on + strand, within Xcc-8004.4046.1at 3906.444 kb on - strand, within Xcc-8004.4046.1at 3906.444 kb on - strand, within Xcc-8004.4046.1at 3906.444 kb on - strand, within Xcc-8004.4046.1at 3906.444 kb on - strand, within Xcc-8004.4046.1at 3906.444 kb on - strand, within Xcc-8004.4046.1at 3906.614 kb on + strand, within Xcc-8004.4046.1at 3906.614 kb on + strand, within Xcc-8004.4046.1at 3906.614 kb on + strand, within Xcc-8004.4046.1at 3906.614 kb on + strand, within Xcc-8004.4046.1at 3906.617 kb on + strand, within Xcc-8004.4046.1at 3906.617 kb on + strand, within Xcc-8004.4046.1at 3906.617 kb on + strand, within Xcc-8004.4046.1at 3906.617 kb on + strand, within Xcc-8004.4046.1at 3906.618 kb on - strand, within Xcc-8004.4046.1at 3906.618 kb on - strand, within Xcc-8004.4046.1at 3906.618 kb on - strand, within Xcc-8004.4046.1at 3906.618 kb on - strand, within Xcc-8004.4046.1at 3906.705 kb on - strand, within Xcc-8004.4046.1at 3906.739 kb on - strand, within Xcc-8004.4046.1at 3906.790 kb on - strand, within Xcc-8004.4046.1at 3906.851 kb on + strand, within Xcc-8004.4046.1at 3906.851 kb on + strand, within Xcc-8004.4046.1at 3906.852 kb on - strand, within Xcc-8004.4046.1at 3906.852 kb on - strand, within Xcc-8004.4046.1at 3906.852 kb on - strand, within Xcc-8004.4046.1at 3906.852 kb on - strand, within Xcc-8004.4046.1at 3906.852 kb on - strand, within Xcc-8004.4046.1at 3907.025 kb on + strand, within Xcc-8004.4046.1at 3907.025 kb on + strand, within Xcc-8004.4046.1at 3907.025 kb on + strand, within Xcc-8004.4046.1at 3907.025 kb on + strand, within Xcc-8004.4046.1at 3907.025 kb on + strand, within Xcc-8004.4046.1at 3907.025 kb on + strand, within Xcc-8004.4046.1at 3907.025 kb on + strand, within Xcc-8004.4046.1at 3907.025 kb on + strand, within Xcc-8004.4046.1at 3907.025 kb on + strand, within Xcc-8004.4046.1at 3907.025 kb on + strand, within Xcc-8004.4046.1at 3907.026 kb on - strand, within Xcc-8004.4046.1at 3907.026 kb on - strand, within Xcc-8004.4046.1at 3907.026 kb on - strand, within Xcc-8004.4046.1at 3907.026 kb on - strand, within Xcc-8004.4046.1at 3907.026 kb on - strand, within Xcc-8004.4046.1at 3907.134 kb on + strand, within Xcc-8004.4046.1at 3907.135 kb on - strand, within Xcc-8004.4046.1at 3907.135 kb on - strand, within Xcc-8004.4046.1at 3907.135 kb on - strand, within Xcc-8004.4046.1at 3907.209 kb on - strand, within Xcc-8004.4046.1at 3907.245 kb on - strand, within Xcc-8004.4046.1at 3907.337 kb on + strand, within Xcc-8004.4046.1at 3907.337 kb on + strand, within Xcc-8004.4046.1at 3907.337 kb on + strand, within Xcc-8004.4046.1at 3907.337 kb on + strand, within Xcc-8004.4046.1at 3907.338 kb on - strand, within Xcc-8004.4046.1at 3907.338 kb on - strand, within Xcc-8004.4046.1at 3907.338 kb on - strand, within Xcc-8004.4046.1at 3907.532 kb on + strand, within Xcc-8004.4046.1at 3907.532 kb on + strand, within Xcc-8004.4046.1at 3907.532 kb on + strand, within Xcc-8004.4046.1at 3907.532 kb on + strand, within Xcc-8004.4046.1at 3907.533 kb on - strand, within Xcc-8004.4046.1at 3907.535 kb on + strand, within Xcc-8004.4046.1at 3907.535 kb on + strand, within Xcc-8004.4046.1at 3907.536 kb on - strand, within Xcc-8004.4046.1at 3907.680 kb on + strand, within Xcc-8004.4046.1at 3907.680 kb on + strand, within Xcc-8004.4046.1at 3907.796 kb on + strand, within Xcc-8004.4046.1at 3907.796 kb on + strand, within Xcc-8004.4046.1at 3907.796 kb on + strand, within Xcc-8004.4046.1at 3907.796 kb on + strand, within Xcc-8004.4046.1at 3907.796 kb on + strand, within Xcc-8004.4046.1at 3907.796 kb on + strand, within Xcc-8004.4046.1at 3907.797 kb on - strand, within Xcc-8004.4046.1at 3907.797 kb on - strand, within Xcc-8004.4046.1at 3907.797 kb on - strand, within Xcc-8004.4046.1at 3908.015 kb on + strandat 3908.015 kb on + strandat 3908.015 kb on + strandat 3908.016 kb on - strandat 3908.016 kb on - strandat 3908.016 kb on - strandat 3908.303 kb on + strandat 3908.321 kb on + strandat 3908.321 kb on + strandat 3908.408 kb on + strandat 3908.409 kb on - strandat 3908.409 kb on - strandat 3908.409 kb on - strandat 3908.409 kb on - strandat 3908.418 kb on - strandat 3908.418 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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3,904,767 + +0.9
3,904,768 - -2.1
3,904,807 + +0.2
3,904,808 - +0.4
3,904,989 - -0.3
3,905,173 - -2.1
3,905,173 - +1.8
3,905,173 - +0.8
3,905,617 - -0.4
3,905,663 - +0.6
3,905,736 + -1.0
3,905,751 - -0.9
3,905,779 - -0.2
3,905,801 - -1.1
3,906,443 + Xcc-8004.4046.1 0.28 -2.2
3,906,443 + Xcc-8004.4046.1 0.28 -1.9
3,906,443 + Xcc-8004.4046.1 0.28 -0.8
3,906,443 + Xcc-8004.4046.1 0.28 -2.4
3,906,443 + Xcc-8004.4046.1 0.28 +0.8
3,906,443 + Xcc-8004.4046.1 0.28 -1.5
3,906,444 - Xcc-8004.4046.1 0.28 -0.8
3,906,444 - Xcc-8004.4046.1 0.28 -1.8
3,906,444 - Xcc-8004.4046.1 0.28 -2.5
3,906,444 - Xcc-8004.4046.1 0.28 -1.6
3,906,444 - Xcc-8004.4046.1 0.28 -0.4
3,906,614 + Xcc-8004.4046.1 0.35 -0.6
3,906,614 + Xcc-8004.4046.1 0.35 -0.6
3,906,614 + Xcc-8004.4046.1 0.35 -1.7
3,906,614 + Xcc-8004.4046.1 0.35 -0.8
3,906,617 + Xcc-8004.4046.1 0.35 -1.6
3,906,617 + Xcc-8004.4046.1 0.35 -1.5
3,906,617 + Xcc-8004.4046.1 0.35 -1.2
3,906,617 + Xcc-8004.4046.1 0.35 -1.4
3,906,618 - Xcc-8004.4046.1 0.35 -0.6
3,906,618 - Xcc-8004.4046.1 0.35 -1.5
3,906,618 - Xcc-8004.4046.1 0.35 +0.3
3,906,618 - Xcc-8004.4046.1 0.35 +0.4
3,906,705 - Xcc-8004.4046.1 0.39 -2.3
3,906,739 - Xcc-8004.4046.1 0.40 +0.3
3,906,790 - Xcc-8004.4046.1 0.42 -2.2
3,906,851 + Xcc-8004.4046.1 0.45 -0.2
3,906,851 + Xcc-8004.4046.1 0.45 +0.7
3,906,852 - Xcc-8004.4046.1 0.45 +0.3
3,906,852 - Xcc-8004.4046.1 0.45 +1.8
3,906,852 - Xcc-8004.4046.1 0.45 -0.4
3,906,852 - Xcc-8004.4046.1 0.45 -2.2
3,906,852 - Xcc-8004.4046.1 0.45 -0.6
3,907,025 + Xcc-8004.4046.1 0.52 +0.2
3,907,025 + Xcc-8004.4046.1 0.52 -0.6
3,907,025 + Xcc-8004.4046.1 0.52 -2.2
3,907,025 + Xcc-8004.4046.1 0.52 +1.8
3,907,025 + Xcc-8004.4046.1 0.52 -0.6
3,907,025 + Xcc-8004.4046.1 0.52 -0.2
3,907,025 + Xcc-8004.4046.1 0.52 -0.1
3,907,025 + Xcc-8004.4046.1 0.52 -0.7
3,907,025 + Xcc-8004.4046.1 0.52 +0.4
3,907,025 + Xcc-8004.4046.1 0.52 -1.6
3,907,026 - Xcc-8004.4046.1 0.52 -0.8
3,907,026 - Xcc-8004.4046.1 0.52 -0.4
3,907,026 - Xcc-8004.4046.1 0.52 +0.4
3,907,026 - Xcc-8004.4046.1 0.52 -1.4
3,907,026 - Xcc-8004.4046.1 0.52 -0.4
3,907,134 + Xcc-8004.4046.1 0.56 +0.2
3,907,135 - Xcc-8004.4046.1 0.56 -1.7
3,907,135 - Xcc-8004.4046.1 0.56 -0.2
3,907,135 - Xcc-8004.4046.1 0.56 -0.5
3,907,209 - Xcc-8004.4046.1 0.59 -0.8
3,907,245 - Xcc-8004.4046.1 0.61 -0.7
3,907,337 + Xcc-8004.4046.1 0.64 +0.8
3,907,337 + Xcc-8004.4046.1 0.64 +0.1
3,907,337 + Xcc-8004.4046.1 0.64 -1.1
3,907,337 + Xcc-8004.4046.1 0.64 -0.4
3,907,338 - Xcc-8004.4046.1 0.64 -2.4
3,907,338 - Xcc-8004.4046.1 0.64 -0.2
3,907,338 - Xcc-8004.4046.1 0.64 -1.1
3,907,532 + Xcc-8004.4046.1 0.72 -1.8
3,907,532 + Xcc-8004.4046.1 0.72 -1.2
3,907,532 + Xcc-8004.4046.1 0.72 +1.2
3,907,532 + Xcc-8004.4046.1 0.72 +2.0
3,907,533 - Xcc-8004.4046.1 0.72 -1.3
3,907,535 + Xcc-8004.4046.1 0.72 -1.4
3,907,535 + Xcc-8004.4046.1 0.72 +0.4
3,907,536 - Xcc-8004.4046.1 0.72 +0.4
3,907,680 + Xcc-8004.4046.1 0.78 -0.7
3,907,680 + Xcc-8004.4046.1 0.78 -0.2
3,907,796 + Xcc-8004.4046.1 0.83 -1.8
3,907,796 + Xcc-8004.4046.1 0.83 -0.9
3,907,796 + Xcc-8004.4046.1 0.83 -1.4
3,907,796 + Xcc-8004.4046.1 0.83 +0.3
3,907,796 + Xcc-8004.4046.1 0.83 -0.8
3,907,796 + Xcc-8004.4046.1 0.83 +0.5
3,907,797 - Xcc-8004.4046.1 0.83 +0.2
3,907,797 - Xcc-8004.4046.1 0.83 -0.9
3,907,797 - Xcc-8004.4046.1 0.83 -0.2
3,908,015 + -0.8
3,908,015 + -2.1
3,908,015 + -0.2
3,908,016 - +1.2
3,908,016 - -0.7
3,908,016 - -1.2
3,908,303 + -0.2
3,908,321 + -0.1
3,908,321 + +0.7
3,908,408 + +0.4
3,908,409 - -0.2
3,908,409 - -2.2
3,908,409 - -0.5
3,908,409 - -1.1
3,908,418 - -1.9
3,908,418 - -1.2

Or see this region's nucleotide sequence