Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.403.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.402.1 and Xcc-8004.403.1 overlap by 8 nucleotidesXcc-8004.403.1 and Xcc-8004.404.1 are separated by 440 nucleotides Xcc-8004.402.1: Xcc-8004.402.1 - FIG01209770: hypothetical protein, at 388,753 to 389,772 Xcc-8004.402.1 Xcc-8004.403.1: Xcc-8004.403.1 - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14), at 389,765 to 390,796 Xcc-8004.403.1 Xcc-8004.404.1: Xcc-8004.404.1 - Abortive infection bacteriophage resistance protein, at 391,237 to 392,199 Xcc-8004.404.1 Position (kb) 389 390 391Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 388.805 kb on - strandat 388.821 kb on + strandat 388.821 kb on + strandat 388.826 kb on - strandat 389.036 kb on + strand, within Xcc-8004.402.1at 389.076 kb on + strand, within Xcc-8004.402.1at 389.110 kb on + strand, within Xcc-8004.402.1at 389.110 kb on + strand, within Xcc-8004.402.1at 389.111 kb on - strand, within Xcc-8004.402.1at 389.111 kb on - strand, within Xcc-8004.402.1at 389.235 kb on + strand, within Xcc-8004.402.1at 389.239 kb on + strand, within Xcc-8004.402.1at 389.240 kb on - strand, within Xcc-8004.402.1at 389.299 kb on + strand, within Xcc-8004.402.1at 389.299 kb on + strand, within Xcc-8004.402.1at 389.300 kb on - strand, within Xcc-8004.402.1at 389.374 kb on + strand, within Xcc-8004.402.1at 389.443 kb on + strand, within Xcc-8004.402.1at 389.543 kb on - strand, within Xcc-8004.402.1at 389.543 kb on - strand, within Xcc-8004.402.1at 389.573 kb on - strand, within Xcc-8004.402.1at 389.770 kb on + strandat 389.770 kb on + strandat 389.770 kb on + strandat 389.771 kb on - strandat 389.771 kb on - strandat 390.044 kb on + strand, within Xcc-8004.403.1at 390.045 kb on - strand, within Xcc-8004.403.1at 390.201 kb on - strand, within Xcc-8004.403.1at 390.404 kb on + strand, within Xcc-8004.403.1at 390.404 kb on + strand, within Xcc-8004.403.1at 390.405 kb on - strand, within Xcc-8004.403.1at 390.794 kb on + strandat 390.794 kb on + strandat 390.898 kb on + strandat 390.902 kb on + strandat 390.903 kb on - strandat 390.917 kb on + strandat 390.917 kb on + strandat 390.917 kb on + strandat 390.917 kb on + strandat 390.918 kb on - strandat 390.918 kb on - strandat 390.918 kb on - strandat 390.921 kb on + strandat 391.000 kb on - strandat 391.074 kb on + strandat 391.074 kb on + strandat 391.075 kb on - strandat 391.140 kb on - strandat 391.149 kb on + strandat 391.213 kb on + strandat 391.285 kb on + strandat 391.285 kb on + strandat 391.285 kb on + strandat 391.285 kb on + strandat 391.286 kb on - strandat 391.307 kb on - strandat 391.393 kb on + strand, within Xcc-8004.404.1at 391.411 kb on + strand, within Xcc-8004.404.1at 391.447 kb on + strand, within Xcc-8004.404.1at 391.447 kb on + strand, within Xcc-8004.404.1at 391.448 kb on - strand, within Xcc-8004.404.1at 391.486 kb on + strand, within Xcc-8004.404.1at 391.536 kb on + strand, within Xcc-8004.404.1at 391.536 kb on + strand, within Xcc-8004.404.1at 391.537 kb on - strand, within Xcc-8004.404.1at 391.537 kb on - strand, within Xcc-8004.404.1at 391.567 kb on + strand, within Xcc-8004.404.1at 391.568 kb on - strand, within Xcc-8004.404.1at 391.568 kb on - strand, within Xcc-8004.404.1at 391.570 kb on - strand, within Xcc-8004.404.1at 391.570 kb on - strand, within Xcc-8004.404.1at 391.664 kb on + strand, within Xcc-8004.404.1at 391.665 kb on - strand, within Xcc-8004.404.1at 391.718 kb on + strand, within Xcc-8004.404.1at 391.718 kb on + strand, within Xcc-8004.404.1at 391.718 kb on + strand, within Xcc-8004.404.1at 391.719 kb on - strand, within Xcc-8004.404.1at 391.719 kb on - strand, within Xcc-8004.404.1at 391.719 kb on - strand, within Xcc-8004.404.1at 391.719 kb on - strand, within Xcc-8004.404.1at 391.719 kb on - strand, within Xcc-8004.404.1at 391.726 kb on + strand, within Xcc-8004.404.1at 391.738 kb on + strand, within Xcc-8004.404.1at 391.771 kb on + strand, within Xcc-8004.404.1at 391.771 kb on + strand, within Xcc-8004.404.1at 391.771 kb on + strand, within Xcc-8004.404.1at 391.772 kb on - strand, within Xcc-8004.404.1at 391.772 kb on - strand, within Xcc-8004.404.1at 391.772 kb on - strand, within Xcc-8004.404.1at 391.772 kb on - strand, within Xcc-8004.404.1at 391.774 kb on - strand, within Xcc-8004.404.1at 391.774 kb on - strand, within Xcc-8004.404.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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388,805 - -1.6
388,821 + -1.0
388,821 + -2.7
388,826 - -2.8
389,036 + Xcc-8004.402.1 0.28 -1.1
389,076 + Xcc-8004.402.1 0.32 -2.5
389,110 + Xcc-8004.402.1 0.35 -2.7
389,110 + Xcc-8004.402.1 0.35 +0.2
389,111 - Xcc-8004.402.1 0.35 -1.6
389,111 - Xcc-8004.402.1 0.35 -3.4
389,235 + Xcc-8004.402.1 0.47 -3.6
389,239 + Xcc-8004.402.1 0.48 -3.3
389,240 - Xcc-8004.402.1 0.48 -3.2
389,299 + Xcc-8004.402.1 0.54 -1.4
389,299 + Xcc-8004.402.1 0.54 -2.1
389,300 - Xcc-8004.402.1 0.54 +0.1
389,374 + Xcc-8004.402.1 0.61 +0.1
389,443 + Xcc-8004.402.1 0.68 -1.1
389,543 - Xcc-8004.402.1 0.77 -1.6
389,543 - Xcc-8004.402.1 0.77 -1.6
389,573 - Xcc-8004.402.1 0.80 -1.8
389,770 + -2.2
389,770 + -2.2
389,770 + -3.5
389,771 - -4.3
389,771 - -1.5
390,044 + Xcc-8004.403.1 0.27 -3.2
390,045 - Xcc-8004.403.1 0.27 -2.7
390,201 - Xcc-8004.403.1 0.42 -1.4
390,404 + Xcc-8004.403.1 0.62 -3.1
390,404 + Xcc-8004.403.1 0.62 -2.8
390,405 - Xcc-8004.403.1 0.62 -2.5
390,794 + -0.7
390,794 + +0.3
390,898 + +0.4
390,902 + -1.4
390,903 - +1.1
390,917 + +2.7
390,917 + +1.3
390,917 + -0.2
390,917 + -0.1
390,918 - +0.9
390,918 - -0.3
390,918 - -0.3
390,921 + -0.0
391,000 - -1.1
391,074 + +0.3
391,074 + -0.4
391,075 - -0.3
391,140 - -0.7
391,149 + -0.4
391,213 + -0.3
391,285 + -1.9
391,285 + +0.7
391,285 + +0.4
391,285 + +1.1
391,286 - -0.1
391,307 - +1.1
391,393 + Xcc-8004.404.1 0.16 +0.3
391,411 + Xcc-8004.404.1 0.18 -0.4
391,447 + Xcc-8004.404.1 0.22 +0.1
391,447 + Xcc-8004.404.1 0.22 +1.3
391,448 - Xcc-8004.404.1 0.22 -1.6
391,486 + Xcc-8004.404.1 0.26 -0.5
391,536 + Xcc-8004.404.1 0.31 -1.3
391,536 + Xcc-8004.404.1 0.31 -0.5
391,537 - Xcc-8004.404.1 0.31 -0.3
391,537 - Xcc-8004.404.1 0.31 -0.4
391,567 + Xcc-8004.404.1 0.34 -1.6
391,568 - Xcc-8004.404.1 0.34 -0.5
391,568 - Xcc-8004.404.1 0.34 +0.4
391,570 - Xcc-8004.404.1 0.35 +0.1
391,570 - Xcc-8004.404.1 0.35 -1.7
391,664 + Xcc-8004.404.1 0.44 +1.0
391,665 - Xcc-8004.404.1 0.44 +1.3
391,718 + Xcc-8004.404.1 0.50 +1.4
391,718 + Xcc-8004.404.1 0.50 -0.0
391,718 + Xcc-8004.404.1 0.50 +1.7
391,719 - Xcc-8004.404.1 0.50 +0.2
391,719 - Xcc-8004.404.1 0.50 +0.4
391,719 - Xcc-8004.404.1 0.50 +3.3
391,719 - Xcc-8004.404.1 0.50 -1.1
391,719 - Xcc-8004.404.1 0.50 -0.8
391,726 + Xcc-8004.404.1 0.51 -0.6
391,738 + Xcc-8004.404.1 0.52 -0.5
391,771 + Xcc-8004.404.1 0.55 +0.3
391,771 + Xcc-8004.404.1 0.55 +1.1
391,771 + Xcc-8004.404.1 0.55 -0.4
391,772 - Xcc-8004.404.1 0.56 +0.7
391,772 - Xcc-8004.404.1 0.56 +0.6
391,772 - Xcc-8004.404.1 0.56 +0.2
391,772 - Xcc-8004.404.1 0.56 +0.6
391,774 - Xcc-8004.404.1 0.56 +1.1
391,774 - Xcc-8004.404.1 0.56 -1.1

Or see this region's nucleotide sequence