Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.400.1 and Xcc-8004.401.1 are separated by 97 nucleotides Xcc-8004.401.1 and Xcc-8004.402.1 are separated by 169 nucleotides Xcc-8004.402.1 and Xcc-8004.403.1 overlap by 8 nucleotides
Xcc-8004.400.1: Xcc-8004.400.1 - Transcriptional activator MetR, at 386,987 to 387,892
Xcc-8004.400.1
Xcc-8004.401.1: Xcc-8004.401.1 - FMN reductase (EC 1.5.1.29), at 387,990 to 388,583
Xcc-8004.401.1
Xcc-8004.402.1: Xcc-8004.402.1 - FIG01209770: hypothetical protein, at 388,753 to 389,772
Xcc-8004.402.1
Xcc-8004.403.1: Xcc-8004.403.1 - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14), at 389,765 to 390,796
Xcc-8004.403.1
Position (kb) 388
389
390 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 387.935 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.977 kb on + strand at 387.977 kb on + strand at 387.977 kb on + strand at 387.977 kb on + strand at 387.978 kb on - strand at 387.978 kb on - strand at 387.978 kb on - strand at 387.978 kb on - strand at 387.978 kb on - strand at 387.978 kb on - strand at 388.252 kb on - strand, within Xcc-8004.401.1 at 388.435 kb on - strand, within Xcc-8004.401.1 at 388.435 kb on - strand, within Xcc-8004.401.1 at 388.461 kb on + strand, within Xcc-8004.401.1 at 388.805 kb on - strand at 388.821 kb on + strand at 388.821 kb on + strand at 388.826 kb on - strand at 389.036 kb on + strand, within Xcc-8004.402.1 at 389.076 kb on + strand, within Xcc-8004.402.1 at 389.110 kb on + strand, within Xcc-8004.402.1 at 389.110 kb on + strand, within Xcc-8004.402.1 at 389.111 kb on - strand, within Xcc-8004.402.1 at 389.111 kb on - strand, within Xcc-8004.402.1 at 389.235 kb on + strand, within Xcc-8004.402.1 at 389.239 kb on + strand, within Xcc-8004.402.1 at 389.240 kb on - strand, within Xcc-8004.402.1 at 389.299 kb on + strand, within Xcc-8004.402.1 at 389.299 kb on + strand, within Xcc-8004.402.1 at 389.300 kb on - strand, within Xcc-8004.402.1 at 389.374 kb on + strand, within Xcc-8004.402.1 at 389.443 kb on + strand, within Xcc-8004.402.1 at 389.543 kb on - strand, within Xcc-8004.402.1 at 389.543 kb on - strand, within Xcc-8004.402.1 at 389.573 kb on - strand, within Xcc-8004.402.1 at 389.770 kb on + strand at 389.770 kb on + strand at 389.770 kb on + strand at 389.771 kb on - strand at 389.771 kb on - strand at 390.044 kb on + strand, within Xcc-8004.403.1 at 390.045 kb on - strand, within Xcc-8004.403.1 at 390.201 kb on - strand, within Xcc-8004.403.1 at 390.404 kb on + strand, within Xcc-8004.403.1 at 390.404 kb on + strand, within Xcc-8004.403.1 at 390.405 kb on - strand, within Xcc-8004.403.1
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 387,935 + +0.0 387,956 + +0.6 387,956 + +0.4 387,956 + -0.3 387,956 + -1.4 387,956 + +0.3 387,956 + +1.3 387,956 + -0.1 387,956 + +1.4 387,956 + -0.0 387,956 + +1.3 387,956 + +1.1 387,956 + +1.4 387,956 + +1.2 387,956 + -1.3 387,957 - -1.1 387,957 - -0.9 387,957 - -2.0 387,957 - -2.8 387,957 - -3.4 387,957 - -3.5 387,957 - -3.5 387,957 - -3.9 387,977 + +0.8 387,977 + -1.2 387,977 + +0.2 387,977 + +0.5 387,978 - -3.2 387,978 - -3.3 387,978 - -3.5 387,978 - -3.7 387,978 - -3.3 387,978 - -2.7 388,252 - Xcc-8004.401.1 0.44 -0.6 388,435 - Xcc-8004.401.1 0.75 -2.4 388,435 - Xcc-8004.401.1 0.75 -1.5 388,461 + Xcc-8004.401.1 0.79 -0.6 388,805 - -1.6 388,821 + -1.0 388,821 + -2.7 388,826 - -2.8 389,036 + Xcc-8004.402.1 0.28 -1.1 389,076 + Xcc-8004.402.1 0.32 -2.5 389,110 + Xcc-8004.402.1 0.35 -2.7 389,110 + Xcc-8004.402.1 0.35 +0.2 389,111 - Xcc-8004.402.1 0.35 -1.6 389,111 - Xcc-8004.402.1 0.35 -3.4 389,235 + Xcc-8004.402.1 0.47 -3.6 389,239 + Xcc-8004.402.1 0.48 -3.3 389,240 - Xcc-8004.402.1 0.48 -3.2 389,299 + Xcc-8004.402.1 0.54 -1.4 389,299 + Xcc-8004.402.1 0.54 -2.1 389,300 - Xcc-8004.402.1 0.54 +0.1 389,374 + Xcc-8004.402.1 0.61 +0.1 389,443 + Xcc-8004.402.1 0.68 -1.1 389,543 - Xcc-8004.402.1 0.77 -1.6 389,543 - Xcc-8004.402.1 0.77 -1.6 389,573 - Xcc-8004.402.1 0.80 -1.8 389,770 + -2.2 389,770 + -2.2 389,770 + -3.5 389,771 - -4.3 389,771 - -1.5 390,044 + Xcc-8004.403.1 0.27 -3.2 390,045 - Xcc-8004.403.1 0.27 -2.7 390,201 - Xcc-8004.403.1 0.42 -1.4 390,404 + Xcc-8004.403.1 0.62 -3.1 390,404 + Xcc-8004.403.1 0.62 -2.8 390,405 - Xcc-8004.403.1 0.62 -2.5
Or see this region's nucleotide sequence