Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.399.1 and Xcc-8004.400.1 are separated by 115 nucleotides Xcc-8004.400.1 and Xcc-8004.401.1 are separated by 97 nucleotides Xcc-8004.401.1 and Xcc-8004.402.1 are separated by 169 nucleotides
Xcc-8004.399.1: Xcc-8004.399.1 - 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20), at 385,999 to 386,871
Xcc-8004.399.1
Xcc-8004.400.1: Xcc-8004.400.1 - Transcriptional activator MetR, at 386,987 to 387,892
Xcc-8004.400.1
Xcc-8004.401.1: Xcc-8004.401.1 - FMN reductase (EC 1.5.1.29), at 387,990 to 388,583
Xcc-8004.401.1
Xcc-8004.402.1: Xcc-8004.402.1 - FIG01209770: hypothetical protein, at 388,753 to 389,772
Xcc-8004.402.1
Position (kb) 386
387
388 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 386.033 kb on + strand at 386.078 kb on + strand at 386.078 kb on + strand at 386.079 kb on - strand at 386.079 kb on - strand at 386.187 kb on - strand, within Xcc-8004.399.1 at 386.235 kb on + strand, within Xcc-8004.399.1 at 386.235 kb on - strand, within Xcc-8004.399.1 at 386.825 kb on + strand at 386.826 kb on - strand at 386.826 kb on - strand at 386.826 kb on - strand at 387.048 kb on + strand at 387.062 kb on - strand at 387.147 kb on + strand, within Xcc-8004.400.1 at 387.147 kb on + strand, within Xcc-8004.400.1 at 387.147 kb on + strand, within Xcc-8004.400.1 at 387.147 kb on + strand, within Xcc-8004.400.1 at 387.147 kb on + strand, within Xcc-8004.400.1 at 387.147 kb on + strand, within Xcc-8004.400.1 at 387.229 kb on + strand, within Xcc-8004.400.1 at 387.277 kb on + strand, within Xcc-8004.400.1 at 387.277 kb on + strand, within Xcc-8004.400.1 at 387.279 kb on + strand, within Xcc-8004.400.1 at 387.279 kb on + strand, within Xcc-8004.400.1 at 387.279 kb on + strand, within Xcc-8004.400.1 at 387.279 kb on + strand, within Xcc-8004.400.1 at 387.279 kb on + strand, within Xcc-8004.400.1 at 387.279 kb on + strand, within Xcc-8004.400.1 at 387.279 kb on + strand, within Xcc-8004.400.1 at 387.280 kb on - strand, within Xcc-8004.400.1 at 387.280 kb on - strand, within Xcc-8004.400.1 at 387.280 kb on - strand, within Xcc-8004.400.1 at 387.280 kb on - strand, within Xcc-8004.400.1 at 387.280 kb on - strand, within Xcc-8004.400.1 at 387.280 kb on - strand, within Xcc-8004.400.1 at 387.280 kb on - strand, within Xcc-8004.400.1 at 387.280 kb on - strand, within Xcc-8004.400.1 at 387.280 kb on - strand, within Xcc-8004.400.1 at 387.284 kb on - strand, within Xcc-8004.400.1 at 387.351 kb on + strand, within Xcc-8004.400.1 at 387.352 kb on - strand, within Xcc-8004.400.1 at 387.402 kb on + strand, within Xcc-8004.400.1 at 387.403 kb on - strand, within Xcc-8004.400.1 at 387.438 kb on + strand, within Xcc-8004.400.1 at 387.439 kb on - strand, within Xcc-8004.400.1 at 387.553 kb on - strand, within Xcc-8004.400.1 at 387.582 kb on + strand, within Xcc-8004.400.1 at 387.703 kb on - strand, within Xcc-8004.400.1 at 387.703 kb on - strand, within Xcc-8004.400.1 at 387.935 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.977 kb on + strand at 387.977 kb on + strand at 387.977 kb on + strand at 387.977 kb on + strand at 387.978 kb on - strand at 387.978 kb on - strand at 387.978 kb on - strand at 387.978 kb on - strand at 387.978 kb on - strand at 387.978 kb on - strand at 388.252 kb on - strand, within Xcc-8004.401.1 at 388.435 kb on - strand, within Xcc-8004.401.1 at 388.435 kb on - strand, within Xcc-8004.401.1 at 388.461 kb on + strand, within Xcc-8004.401.1 at 388.805 kb on - strand at 388.821 kb on + strand at 388.821 kb on + strand at 388.826 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 386,033 + -2.2 386,078 + +0.4 386,078 + +0.2 386,079 - -1.8 386,079 - -1.0 386,187 - Xcc-8004.399.1 0.22 +0.1 386,235 + Xcc-8004.399.1 0.27 +0.9 386,235 - Xcc-8004.399.1 0.27 -0.4 386,825 + -1.8 386,826 - +1.3 386,826 - -0.8 386,826 - -0.0 387,048 + -3.7 387,062 - -2.5 387,147 + Xcc-8004.400.1 0.18 -2.3 387,147 + Xcc-8004.400.1 0.18 -3.3 387,147 + Xcc-8004.400.1 0.18 -1.9 387,147 + Xcc-8004.400.1 0.18 -2.5 387,147 + Xcc-8004.400.1 0.18 -0.9 387,147 + Xcc-8004.400.1 0.18 -0.3 387,229 + Xcc-8004.400.1 0.27 -3.1 387,277 + Xcc-8004.400.1 0.32 -2.0 387,277 + Xcc-8004.400.1 0.32 -0.0 387,279 + Xcc-8004.400.1 0.32 +0.1 387,279 + Xcc-8004.400.1 0.32 -2.1 387,279 + Xcc-8004.400.1 0.32 -1.4 387,279 + Xcc-8004.400.1 0.32 -0.6 387,279 + Xcc-8004.400.1 0.32 -0.9 387,279 + Xcc-8004.400.1 0.32 -1.8 387,279 + Xcc-8004.400.1 0.32 -2.0 387,280 - Xcc-8004.400.1 0.32 -1.7 387,280 - Xcc-8004.400.1 0.32 -2.2 387,280 - Xcc-8004.400.1 0.32 -1.8 387,280 - Xcc-8004.400.1 0.32 -3.3 387,280 - Xcc-8004.400.1 0.32 -2.7 387,280 - Xcc-8004.400.1 0.32 -3.1 387,280 - Xcc-8004.400.1 0.32 -2.1 387,280 - Xcc-8004.400.1 0.32 -1.6 387,280 - Xcc-8004.400.1 0.32 -2.1 387,284 - Xcc-8004.400.1 0.33 -0.8 387,351 + Xcc-8004.400.1 0.40 -0.1 387,352 - Xcc-8004.400.1 0.40 -2.5 387,402 + Xcc-8004.400.1 0.46 -0.8 387,403 - Xcc-8004.400.1 0.46 -2.2 387,438 + Xcc-8004.400.1 0.50 -0.5 387,439 - Xcc-8004.400.1 0.50 -0.5 387,553 - Xcc-8004.400.1 0.62 -2.1 387,582 + Xcc-8004.400.1 0.66 +0.3 387,703 - Xcc-8004.400.1 0.79 -1.0 387,703 - Xcc-8004.400.1 0.79 -1.8 387,935 + +0.0 387,956 + +0.6 387,956 + +0.4 387,956 + -0.3 387,956 + -1.4 387,956 + +0.3 387,956 + +1.3 387,956 + -0.1 387,956 + +1.4 387,956 + -0.0 387,956 + +1.3 387,956 + +1.1 387,956 + +1.4 387,956 + +1.2 387,956 + -1.3 387,957 - -1.1 387,957 - -0.9 387,957 - -2.0 387,957 - -2.8 387,957 - -3.4 387,957 - -3.5 387,957 - -3.5 387,957 - -3.9 387,977 + +0.8 387,977 + -1.2 387,977 + +0.2 387,977 + +0.5 387,978 - -3.2 387,978 - -3.3 387,978 - -3.5 387,978 - -3.7 387,978 - -3.3 387,978 - -2.7 388,252 - Xcc-8004.401.1 0.44 -0.6 388,435 - Xcc-8004.401.1 0.75 -2.4 388,435 - Xcc-8004.401.1 0.75 -1.5 388,461 + Xcc-8004.401.1 0.79 -0.6 388,805 - -1.6 388,821 + -1.0 388,821 + -2.7 388,826 - -2.8
Or see this region's nucleotide sequence