Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3993.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
3,869,520	+		Xcc-8004.3992.1	0.41	+0.4
3,869,520	+		Xcc-8004.3992.1	0.41	+0.1
3,869,520	+		Xcc-8004.3992.1	0.41	+1.3
3,869,520	+		Xcc-8004.3992.1	0.41	-0.7
3,869,521	-		Xcc-8004.3992.1	0.41	+0.3
3,869,521	-		Xcc-8004.3992.1	0.41	-0.0
3,869,521	-		Xcc-8004.3992.1	0.41	-0.2
3,869,521	-		Xcc-8004.3992.1	0.41	-1.2
3,869,687	+		Xcc-8004.3992.1	0.54	-0.4
3,869,687	+		Xcc-8004.3992.1	0.54	-0.8
3,869,687	+		Xcc-8004.3992.1	0.54	+0.6
3,869,687	+		Xcc-8004.3992.1	0.54	+1.0
3,869,687	+		Xcc-8004.3992.1	0.54	-0.6
3,869,688	-		Xcc-8004.3992.1	0.54	+0.2
3,869,688	-		Xcc-8004.3992.1	0.54	+0.8
3,869,688	-		Xcc-8004.3992.1	0.54	-0.1
3,869,688	-		Xcc-8004.3992.1	0.54	-1.8
3,869,688	-		Xcc-8004.3992.1	0.54	+0.4
3,869,719	+		Xcc-8004.3992.1	0.56	-0.8
3,869,719	+		Xcc-8004.3992.1	0.56	+0.1
3,869,719	+		Xcc-8004.3992.1	0.56	-0.2
3,869,720	-		Xcc-8004.3992.1	0.56	+0.4
3,869,720	-		Xcc-8004.3992.1	0.56	-0.6
3,869,720	-		Xcc-8004.3992.1	0.56	-0.7
3,870,004	+		Xcc-8004.3992.1	0.77	-0.8
3,870,004	+		Xcc-8004.3992.1	0.77	-0.9
3,870,004	+		Xcc-8004.3992.1	0.77	+0.8
3,870,004	+		Xcc-8004.3992.1	0.77	-0.5
3,870,004	+		Xcc-8004.3992.1	0.77	+2.2
3,870,004	+		Xcc-8004.3992.1	0.77	+1.0
3,870,005	-		Xcc-8004.3992.1	0.77	-0.1
3,870,005	-		Xcc-8004.3992.1	0.77	-0.4
3,870,005	-		Xcc-8004.3992.1	0.77	-1.6
3,870,005	-		Xcc-8004.3992.1	0.77	+0.2
3,870,005	-		Xcc-8004.3992.1	0.77	-0.0
3,870,389	+				-1.8
3,870,389	+				+1.0
3,870,390	-				+0.7
3,870,390	-				+0.8
3,870,390	-				+0.4
3,872,124	-				-0.5
3,872,165	-				-0.5
3,872,169	+				-0.6
3,872,170	-				-0.1
3,872,170	-				-0.2
3,872,170	-				-0.7
3,872,225	-				+0.0
3,872,225	-				+0.6
3,872,225	-				-0.5
3,872,258	-				-0.7
3,872,258	-				+0.2
3,872,258	-				+0.5
3,872,258	-				+0.8
3,872,258	-				-0.0
3,872,258	-				+0.3
3,872,258	-				-0.2
3,872,258	-				+1.3
3,872,258	-				+0.4
3,872,258	-				+0.8
3,872,258	-				+0.6
3,872,258	-				-0.2
3,872,258	-				-0.0
3,872,258	-				-0.1
3,872,258	-				+1.8
3,872,258	-				+2.0
3,872,258	-				+2.1
3,872,258	-				+0.5
3,872,258	-				-0.0
3,872,258	-				-0.2
3,872,258	-				+0.3
3,872,258	-				-0.6
3,872,258	-				-0.1
3,872,258	-				-0.8
3,872,258	-				+0.2