Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3974.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
3,850,319	+				-0.5
3,850,319	+				+0.4
3,850,319	+				+0.8
3,850,320	-				+0.5
3,850,320	-				-0.4
3,850,321	+				-0.7
3,850,322	-				-0.8
3,850,353	-				-0.8
3,850,353	-				-1.4
3,850,467	+				+0.2
3,850,572	+				-1.0
3,850,572	+				+0.0
3,850,572	+				+0.9
3,850,572	+				-1.0
3,850,573	-				-0.0
3,850,712	+				+0.9
3,850,712	+				-0.5
3,850,713	-				+0.1
3,851,039	-				-0.6
3,851,058	-				+0.3
3,851,058	-				+1.8
3,851,171	+				+1.0
3,851,181	+				-1.0
3,851,208	+				+0.6
3,851,208	+				+0.3
3,851,208	+				+0.0
3,851,208	+				+0.4
3,851,208	+				+0.5
3,851,208	+				-0.1
3,851,208	+				+1.3
3,851,209	-				-0.2
3,851,209	-				+1.4
3,851,209	-				-0.7
3,851,209	-				-0.8
3,851,209	-				+0.4
3,851,209	-				-1.0
3,851,209	-				+0.4
3,851,212	+				-0.2
3,851,212	+				-0.5
3,851,212	+				+1.0
3,851,213	-				+2.1
3,851,213	-				-0.0
3,851,283	+		Xcc-8004.3974.1	0.10	-1.3
3,851,284	-		Xcc-8004.3974.1	0.10	-0.0
3,851,327	+		Xcc-8004.3974.1	0.15	-0.6
3,851,327	+		Xcc-8004.3974.1	0.15	+0.7
3,851,328	-		Xcc-8004.3974.1	0.15	-1.6
3,851,328	-		Xcc-8004.3974.1	0.15	-1.4
3,851,418	+		Xcc-8004.3974.1	0.24	+0.2
3,851,418	+		Xcc-8004.3974.1	0.24	+0.2
3,851,418	+		Xcc-8004.3974.1	0.24	-0.5
3,851,421	+		Xcc-8004.3974.1	0.24	+0.3
3,851,421	+		Xcc-8004.3974.1	0.24	+0.4
3,851,422	-		Xcc-8004.3974.1	0.24	-0.7
3,851,422	-		Xcc-8004.3974.1	0.24	-0.8
3,851,516	+		Xcc-8004.3974.1	0.34	-0.1
3,851,565	-		Xcc-8004.3974.1	0.38	-0.9
3,851,565	-		Xcc-8004.3974.1	0.38	-0.0
3,851,565	-		Xcc-8004.3974.1	0.38	-0.1
3,851,583	+		Xcc-8004.3974.1	0.40	-0.0
3,851,583	+		Xcc-8004.3974.1	0.40	+0.5
3,851,583	+		Xcc-8004.3974.1	0.40	+0.4
3,851,584	-		Xcc-8004.3974.1	0.40	-0.3
3,851,584	-		Xcc-8004.3974.1	0.40	-0.1
3,851,811	-		Xcc-8004.3974.1	0.63	+0.0
3,852,407	-				+0.0
3,852,464	-				+1.0
3,852,505	+		Xcc-8004.3975.1	0.11	-0.6
3,852,505	+		Xcc-8004.3975.1	0.11	-0.2
3,852,505	+		Xcc-8004.3975.1	0.11	-1.1
3,852,506	-		Xcc-8004.3975.1	0.11	-0.1
3,852,698	-		Xcc-8004.3975.1	0.20	+1.3
3,852,698	-		Xcc-8004.3975.1	0.20	+0.2
3,852,853	+		Xcc-8004.3975.1	0.27	+0.2
3,853,009	+		Xcc-8004.3975.1	0.34	+0.7
3,853,009	+		Xcc-8004.3975.1	0.34	+0.0
3,853,009	+		Xcc-8004.3975.1	0.34	-1.0
3,853,009	+		Xcc-8004.3975.1	0.34	+0.6
3,853,009	+		Xcc-8004.3975.1	0.34	-0.2
3,853,009	+		Xcc-8004.3975.1	0.34	+0.0
3,853,009	+		Xcc-8004.3975.1	0.34	-0.1
3,853,010	-		Xcc-8004.3975.1	0.34	+0.3
3,853,010	-		Xcc-8004.3975.1	0.34	+2.3
3,853,010	-		Xcc-8004.3975.1	0.34	+0.7
3,853,010	-		Xcc-8004.3975.1	0.34	+0.4
3,853,010	-		Xcc-8004.3975.1	0.34	-0.2
3,853,144	+		Xcc-8004.3975.1	0.40	+0.6
3,853,144	+		Xcc-8004.3975.1	0.40	-0.8
3,853,144	+		Xcc-8004.3975.1	0.40	-0.8
3,853,144	+		Xcc-8004.3975.1	0.40	+1.5
3,853,145	-		Xcc-8004.3975.1	0.40	+0.5
3,853,150	+		Xcc-8004.3975.1	0.40	-0.4
3,853,150	+		Xcc-8004.3975.1	0.40	-0.2
3,853,150	+		Xcc-8004.3975.1	0.40	+0.6
3,853,151	-		Xcc-8004.3975.1	0.40	+0.2