Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3970.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
3,844,393	+				+0.0
3,844,599	+		Xcc-8004.3968.1	0.38	+0.1
3,844,680	-		Xcc-8004.3968.1	0.50	-1.4
3,844,863	+		Xcc-8004.3968.1	0.79	+1.4
3,844,863	+		Xcc-8004.3968.1	0.79	-2.4
3,844,864	-		Xcc-8004.3968.1	0.79	+0.4
3,844,914	+		Xcc-8004.3968.1	0.87	-1.5
3,844,914	+		Xcc-8004.3968.1	0.87	+0.1
3,844,915	-		Xcc-8004.3968.1	0.87	+1.1
3,844,995	+				-1.0
3,845,128	+				+0.4
3,845,129	-				+0.3
3,845,129	-				+0.0
3,845,248	+				-1.0
3,845,249	-				+0.4
3,845,416	+				+0.3
3,845,417	-				-0.4
3,845,449	+				+0.4
3,845,449	+				+1.4
3,845,449	+				+0.6
3,845,449	+				-0.9
3,845,450	-				-0.2
3,845,450	-				+1.1
3,845,479	+				-0.3
3,845,479	+				+1.2
3,845,480	-				-0.2
3,845,783	-				+0.4
3,845,783	-				-0.2
3,845,864	-		Xcc-8004.3970.1	0.10	-0.0
3,845,927	+		Xcc-8004.3970.1	0.12	+0.8
3,846,057	-		Xcc-8004.3970.1	0.14	-0.1
3,846,353	-		Xcc-8004.3970.1	0.20	-0.4
3,846,403	+		Xcc-8004.3970.1	0.21	-0.2
3,846,403	+		Xcc-8004.3970.1	0.21	-2.5
3,846,403	+		Xcc-8004.3970.1	0.21	+0.1
3,846,457	+		Xcc-8004.3970.1	0.22	-0.8
3,846,458	-		Xcc-8004.3970.1	0.22	+0.8
3,846,574	+		Xcc-8004.3970.1	0.25	+1.8
3,846,574	+		Xcc-8004.3970.1	0.25	-0.2
3,846,574	+		Xcc-8004.3970.1	0.25	-0.2
3,846,574	+		Xcc-8004.3970.1	0.25	-0.0
3,846,575	-		Xcc-8004.3970.1	0.25	+0.6
3,846,598	+		Xcc-8004.3970.1	0.25	-0.0
3,846,598	+		Xcc-8004.3970.1	0.25	+0.5
3,846,598	+		Xcc-8004.3970.1	0.25	-1.9
3,846,598	+		Xcc-8004.3970.1	0.25	-0.3
3,846,599	-		Xcc-8004.3970.1	0.25	-0.2
3,846,599	-		Xcc-8004.3970.1	0.25	-0.8
3,846,794	-		Xcc-8004.3970.1	0.29	-0.1
3,846,985	+		Xcc-8004.3970.1	0.33	+0.8
3,846,986	-		Xcc-8004.3970.1	0.33	-0.2
3,847,043	+		Xcc-8004.3970.1	0.34	+1.5
3,847,044	-		Xcc-8004.3970.1	0.34	-0.0
3,847,044	-		Xcc-8004.3970.1	0.34	-0.8
3,847,046	-		Xcc-8004.3970.1	0.34	+1.4
3,847,046	-		Xcc-8004.3970.1	0.34	-0.1
3,847,270	-		Xcc-8004.3970.1	0.39	-0.8
3,847,270	-		Xcc-8004.3970.1	0.39	-0.5
3,847,270	-		Xcc-8004.3970.1	0.39	-1.1
3,847,531	+		Xcc-8004.3970.1	0.44	-1.1
3,847,532	-		Xcc-8004.3970.1	0.44	-1.0
3,847,540	+		Xcc-8004.3970.1	0.44	-0.1
3,847,541	-		Xcc-8004.3970.1	0.44	+0.1
3,847,847	-		Xcc-8004.3970.1	0.51	-0.5
3,847,847	-		Xcc-8004.3970.1	0.51	-1.2
3,847,847	-		Xcc-8004.3970.1	0.51	+0.8
3,847,847	-		Xcc-8004.3970.1	0.51	+1.0
3,847,924	+		Xcc-8004.3970.1	0.52	-0.9
3,847,924	+		Xcc-8004.3970.1	0.52	-1.1
3,847,924	+		Xcc-8004.3970.1	0.52	-0.3
3,847,924	+		Xcc-8004.3970.1	0.52	+0.3
3,847,925	-		Xcc-8004.3970.1	0.52	-1.3
3,847,925	-		Xcc-8004.3970.1	0.52	-0.5
3,847,925	-		Xcc-8004.3970.1	0.52	-0.4
3,848,149	+		Xcc-8004.3970.1	0.57	+0.1
3,848,245	+		Xcc-8004.3970.1	0.59	+1.5
3,848,246	-		Xcc-8004.3970.1	0.59	+0.0
3,848,266	+		Xcc-8004.3970.1	0.59	+0.9
3,848,266	+		Xcc-8004.3970.1	0.59	+1.8
3,848,267	-		Xcc-8004.3970.1	0.59	+0.3
3,848,267	-		Xcc-8004.3970.1	0.59	-0.4
3,848,267	-		Xcc-8004.3970.1	0.59	+0.1
3,848,278	+		Xcc-8004.3970.1	0.59	-1.1
3,848,279	-		Xcc-8004.3970.1	0.59	-0.5
3,848,488	+		Xcc-8004.3970.1	0.64	+0.8
3,848,488	+		Xcc-8004.3970.1	0.64	+0.8
3,848,728	+		Xcc-8004.3970.1	0.68	+0.1
3,848,734	+		Xcc-8004.3970.1	0.68	+0.0
3,848,944	+		Xcc-8004.3970.1	0.73	+0.4
3,848,945	-		Xcc-8004.3970.1	0.73	+0.6
3,849,216	-		Xcc-8004.3970.1	0.78	-0.8
3,849,216	-		Xcc-8004.3970.1	0.78	-0.1
3,849,262	+		Xcc-8004.3970.1	0.79	+0.2
3,849,403	+		Xcc-8004.3970.1	0.82	-0.6
3,849,541	+		Xcc-8004.3970.1	0.85	-0.8
3,849,541	+		Xcc-8004.3970.1	0.85	-0.4
3,849,542	-		Xcc-8004.3970.1	0.85	-1.8
3,849,542	-		Xcc-8004.3970.1	0.85	-0.5
3,849,635	-		Xcc-8004.3970.1	0.87	+0.6
3,849,914	+				-0.2
3,849,914	+				-1.3
3,849,915	-				+0.1
3,849,915	-				-0.0
3,849,915	-				-1.8
3,849,915	-				+0.5
3,849,916	+				-0.1
3,849,916	+				+1.8
3,849,917	-				+0.9
3,849,917	-				+0.3
3,849,937	+				+0.6
3,849,938	-				+1.5
3,850,319	+				-0.5
3,850,319	+				+0.4
3,850,319	+				+0.8
3,850,320	-				+0.5
3,850,320	-				-0.4
3,850,321	+				-0.7
3,850,322	-				-0.8
3,850,353	-				-0.8
3,850,353	-				-1.4
3,850,467	+				+0.2
3,850,572	+				-1.0
3,850,572	+				+0.0
3,850,572	+				+0.9
3,850,572	+				-1.0
3,850,573	-				-0.0
3,850,712	+				+0.9
3,850,712	+				-0.5
3,850,713	-				+0.1
3,851,039	-				-0.6
3,851,058	-				+0.3
3,851,058	-				+1.8
3,851,171	+				+1.0
3,851,181	+				-1.0
3,851,208	+				+0.6
3,851,208	+				+0.3
3,851,208	+				+0.0
3,851,208	+				+0.4
3,851,208	+				+0.5
3,851,208	+				-0.1
3,851,208	+				+1.3
3,851,209	-				-0.2
3,851,209	-				+1.4
3,851,209	-				-0.7
3,851,209	-				-0.8
3,851,209	-				+0.4
3,851,209	-				-1.0
3,851,209	-				+0.4
3,851,212	+				-0.2
3,851,212	+				-0.5
3,851,212	+				+1.0
3,851,213	-				+2.1
3,851,213	-				-0.0
3,851,283	+		Xcc-8004.3974.1	0.10	-1.3
3,851,284	-		Xcc-8004.3974.1	0.10	-0.0