Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.393.1 and Xcc-8004.394.1 are separated by 356 nucleotides Xcc-8004.394.1 and Xcc-8004.395.1 are separated by 200 nucleotides Xcc-8004.395.1 and Xcc-8004.396.1 are separated by 90 nucleotides
Xcc-8004.393.1: Xcc-8004.393.1 - 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases, at 378,588 to 379,463
Xcc-8004.393.1
Xcc-8004.394.1: Xcc-8004.394.1 - FIG01211006: hypothetical protein, at 379,820 to 380,212
Xcc-8004.394.1
Xcc-8004.395.1: Xcc-8004.395.1 - Formyltetrahydrofolate deformylase (EC 3.5.1.10), at 380,413 to 381,282
Xcc-8004.395.1
Xcc-8004.396.1: Xcc-8004.396.1 - hypothetical protein, at 381,373 to 382,290
Xcc-8004.396.1
Position (kb) 380
381
382 Strain fitness (log2 ratio) -2
-1
0
1 at 379.461 kb on + strand at 379.461 kb on + strand at 379.461 kb on + strand at 379.461 kb on + strand at 379.550 kb on + strand at 379.551 kb on - strand at 379.551 kb on - strand at 379.715 kb on + strand at 379.716 kb on - strand at 379.935 kb on + strand, within Xcc-8004.394.1 at 379.935 kb on + strand, within Xcc-8004.394.1 at 379.935 kb on + strand, within Xcc-8004.394.1 at 379.936 kb on - strand, within Xcc-8004.394.1 at 379.945 kb on + strand, within Xcc-8004.394.1 at 379.946 kb on - strand, within Xcc-8004.394.1 at 380.371 kb on + strand at 380.443 kb on + strand at 380.444 kb on - strand at 380.486 kb on - strand at 380.524 kb on - strand, within Xcc-8004.395.1 at 380.755 kb on - strand, within Xcc-8004.395.1 at 380.927 kb on + strand, within Xcc-8004.395.1 at 380.927 kb on + strand, within Xcc-8004.395.1 at 380.927 kb on + strand, within Xcc-8004.395.1 at 380.942 kb on - strand, within Xcc-8004.395.1 at 381.041 kb on - strand, within Xcc-8004.395.1 at 381.091 kb on + strand, within Xcc-8004.395.1 at 381.091 kb on + strand, within Xcc-8004.395.1 at 381.091 kb on + strand, within Xcc-8004.395.1 at 381.091 kb on + strand, within Xcc-8004.395.1 at 381.092 kb on - strand, within Xcc-8004.395.1 at 381.264 kb on + strand at 381.265 kb on - strand at 381.385 kb on + strand at 381.386 kb on - strand at 381.413 kb on + strand at 381.414 kb on - strand at 381.563 kb on + strand, within Xcc-8004.396.1 at 381.563 kb on + strand, within Xcc-8004.396.1 at 381.564 kb on - strand, within Xcc-8004.396.1 at 381.564 kb on - strand, within Xcc-8004.396.1 at 381.564 kb on - strand, within Xcc-8004.396.1 at 381.763 kb on + strand, within Xcc-8004.396.1 at 381.764 kb on - strand, within Xcc-8004.396.1 at 381.764 kb on - strand, within Xcc-8004.396.1 at 382.172 kb on + strand, within Xcc-8004.396.1
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 379,461 + -2.3 379,461 + -0.3 379,461 + +0.1 379,461 + +0.5 379,550 + +0.1 379,551 - +0.7 379,551 - +0.8 379,715 + -0.3 379,716 - +0.9 379,935 + Xcc-8004.394.1 0.29 -0.1 379,935 + Xcc-8004.394.1 0.29 +0.6 379,935 + Xcc-8004.394.1 0.29 +0.8 379,936 - Xcc-8004.394.1 0.30 -0.0 379,945 + Xcc-8004.394.1 0.32 +0.2 379,946 - Xcc-8004.394.1 0.32 +0.3 380,371 + -1.1 380,443 + +0.7 380,444 - -0.1 380,486 - -0.2 380,524 - Xcc-8004.395.1 0.13 -2.4 380,755 - Xcc-8004.395.1 0.39 -2.4 380,927 + Xcc-8004.395.1 0.59 +0.7 380,927 + Xcc-8004.395.1 0.59 -1.7 380,927 + Xcc-8004.395.1 0.59 -0.9 380,942 - Xcc-8004.395.1 0.61 -0.3 381,041 - Xcc-8004.395.1 0.72 -1.1 381,091 + Xcc-8004.395.1 0.78 -0.5 381,091 + Xcc-8004.395.1 0.78 -2.2 381,091 + Xcc-8004.395.1 0.78 -1.0 381,091 + Xcc-8004.395.1 0.78 -1.4 381,092 - Xcc-8004.395.1 0.78 -0.9 381,264 + -0.1 381,265 - -0.6 381,385 + -0.0 381,386 - +0.2 381,413 + +0.7 381,414 - -1.0 381,563 + Xcc-8004.396.1 0.21 +0.0 381,563 + Xcc-8004.396.1 0.21 +0.9 381,564 - Xcc-8004.396.1 0.21 +0.9 381,564 - Xcc-8004.396.1 0.21 -0.2 381,564 - Xcc-8004.396.1 0.21 +0.7 381,763 + Xcc-8004.396.1 0.42 -0.6 381,764 - Xcc-8004.396.1 0.43 +0.2 381,764 - Xcc-8004.396.1 0.43 +0.3 382,172 + Xcc-8004.396.1 0.87 -0.1
Or see this region's nucleotide sequence