Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3784.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3783.1 and Xcc-8004.3784.1 are separated by 30 nucleotidesXcc-8004.3784.1 and Xcc-8004.3785.1 overlap by 4 nucleotidesXcc-8004.3785.1 and Xcc-8004.3786.1 overlap by 4 nucleotides Xcc-8004.3783.1: Xcc-8004.3783.1 - Two-component system sensor protein, at 3,656,814 to 3,658,103 Xcc-8004.3783.1 Xcc-8004.3784.1: Xcc-8004.3784.1 - Signal transduction histidine kinase, at 3,658,134 to 3,661,274 Xcc-8004.3784.1 Xcc-8004.3785.1: Xcc-8004.3785.1 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 3,661,271 to 3,662,095 Xcc-8004.3785.1 Xcc-8004.3786.1: Xcc-8004.3786.1 - Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61), at 3,662,092 to 3,662,679 Xcc-8004.3786.1 Position (kb) 3658 3659 3660 3661 3662Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3657.198 kb on + strand, within Xcc-8004.3783.1at 3657.198 kb on + strand, within Xcc-8004.3783.1at 3657.199 kb on - strand, within Xcc-8004.3783.1at 3657.199 kb on - strand, within Xcc-8004.3783.1at 3657.775 kb on + strand, within Xcc-8004.3783.1at 3657.775 kb on + strand, within Xcc-8004.3783.1at 3657.775 kb on + strand, within Xcc-8004.3783.1at 3657.775 kb on + strand, within Xcc-8004.3783.1at 3657.775 kb on + strand, within Xcc-8004.3783.1at 3657.776 kb on - strand, within Xcc-8004.3783.1at 3657.776 kb on - strand, within Xcc-8004.3783.1at 3657.776 kb on - strand, within Xcc-8004.3783.1at 3657.776 kb on - strand, within Xcc-8004.3783.1at 3657.817 kb on + strand, within Xcc-8004.3783.1at 3657.818 kb on - strand, within Xcc-8004.3783.1at 3657.818 kb on - strand, within Xcc-8004.3783.1at 3657.851 kb on + strand, within Xcc-8004.3783.1at 3657.851 kb on + strand, within Xcc-8004.3783.1at 3657.852 kb on - strand, within Xcc-8004.3783.1at 3657.880 kb on + strand, within Xcc-8004.3783.1at 3657.880 kb on + strand, within Xcc-8004.3783.1at 3657.880 kb on + strand, within Xcc-8004.3783.1at 3657.934 kb on + strand, within Xcc-8004.3783.1at 3657.934 kb on + strand, within Xcc-8004.3783.1at 3658.011 kb on - strandat 3658.011 kb on - strandat 3658.011 kb on - strandat 3658.054 kb on - strandat 3658.233 kb on + strandat 3658.251 kb on + strandat 3658.251 kb on + strandat 3658.251 kb on + strandat 3658.251 kb on + strandat 3658.251 kb on + strandat 3658.252 kb on - strandat 3658.252 kb on - strandat 3658.252 kb on - strandat 3658.252 kb on - strandat 3658.252 kb on - strandat 3658.252 kb on - strandat 3658.516 kb on + strand, within Xcc-8004.3784.1at 3658.602 kb on + strand, within Xcc-8004.3784.1at 3658.602 kb on + strand, within Xcc-8004.3784.1at 3658.660 kb on + strand, within Xcc-8004.3784.1at 3658.660 kb on + strand, within Xcc-8004.3784.1at 3658.660 kb on + strand, within Xcc-8004.3784.1at 3658.660 kb on + strand, within Xcc-8004.3784.1at 3658.660 kb on + strand, within Xcc-8004.3784.1at 3658.661 kb on - strand, within Xcc-8004.3784.1at 3658.661 kb on - strand, within Xcc-8004.3784.1at 3658.661 kb on - strand, within Xcc-8004.3784.1at 3658.661 kb on - strand, within Xcc-8004.3784.1at 3658.661 kb on - strand, within Xcc-8004.3784.1at 3659.227 kb on - strand, within Xcc-8004.3784.1at 3659.350 kb on - strand, within Xcc-8004.3784.1at 3659.784 kb on + strand, within Xcc-8004.3784.1at 3660.031 kb on + strand, within Xcc-8004.3784.1at 3660.394 kb on - strand, within Xcc-8004.3784.1at 3661.207 kb on - strandat 3661.207 kb on - strandat 3661.207 kb on - strandat 3661.566 kb on - strand, within Xcc-8004.3785.1at 3661.722 kb on - strand, within Xcc-8004.3785.1at 3661.758 kb on - strand, within Xcc-8004.3785.1at 3661.758 kb on - strand, within Xcc-8004.3785.1at 3661.847 kb on - strand, within Xcc-8004.3785.1at 3661.929 kb on - strand, within Xcc-8004.3785.1at 3661.929 kb on - strand, within Xcc-8004.3785.1at 3661.971 kb on - strand, within Xcc-8004.3785.1at 3662.113 kb on + strandat 3662.114 kb on - strandat 3662.114 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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3,657,198 + Xcc-8004.3783.1 0.30 -1.4
3,657,198 + Xcc-8004.3783.1 0.30 -0.7
3,657,199 - Xcc-8004.3783.1 0.30 -0.6
3,657,199 - Xcc-8004.3783.1 0.30 +0.3
3,657,775 + Xcc-8004.3783.1 0.74 -1.8
3,657,775 + Xcc-8004.3783.1 0.74 -0.6
3,657,775 + Xcc-8004.3783.1 0.74 -1.4
3,657,775 + Xcc-8004.3783.1 0.74 +0.7
3,657,775 + Xcc-8004.3783.1 0.74 -1.5
3,657,776 - Xcc-8004.3783.1 0.75 -0.6
3,657,776 - Xcc-8004.3783.1 0.75 +0.4
3,657,776 - Xcc-8004.3783.1 0.75 -1.4
3,657,776 - Xcc-8004.3783.1 0.75 -0.5
3,657,817 + Xcc-8004.3783.1 0.78 +0.2
3,657,818 - Xcc-8004.3783.1 0.78 -2.0
3,657,818 - Xcc-8004.3783.1 0.78 -2.8
3,657,851 + Xcc-8004.3783.1 0.80 -1.1
3,657,851 + Xcc-8004.3783.1 0.80 -0.6
3,657,852 - Xcc-8004.3783.1 0.80 -1.8
3,657,880 + Xcc-8004.3783.1 0.83 +0.6
3,657,880 + Xcc-8004.3783.1 0.83 -0.4
3,657,880 + Xcc-8004.3783.1 0.83 -1.5
3,657,934 + Xcc-8004.3783.1 0.87 -0.2
3,657,934 + Xcc-8004.3783.1 0.87 +1.3
3,658,011 - -2.5
3,658,011 - -0.3
3,658,011 - -1.4
3,658,054 - -1.4
3,658,233 + +0.2
3,658,251 + -0.2
3,658,251 + -0.5
3,658,251 + +0.2
3,658,251 + +0.7
3,658,251 + +0.2
3,658,252 - +0.2
3,658,252 - -0.6
3,658,252 - +0.5
3,658,252 - -0.3
3,658,252 - -0.0
3,658,252 - -1.4
3,658,516 + Xcc-8004.3784.1 0.12 -0.3
3,658,602 + Xcc-8004.3784.1 0.15 +1.1
3,658,602 + Xcc-8004.3784.1 0.15 +0.3
3,658,660 + Xcc-8004.3784.1 0.17 +1.1
3,658,660 + Xcc-8004.3784.1 0.17 -0.5
3,658,660 + Xcc-8004.3784.1 0.17 +0.7
3,658,660 + Xcc-8004.3784.1 0.17 +0.3
3,658,660 + Xcc-8004.3784.1 0.17 -0.2
3,658,661 - Xcc-8004.3784.1 0.17 +0.0
3,658,661 - Xcc-8004.3784.1 0.17 +2.4
3,658,661 - Xcc-8004.3784.1 0.17 -1.3
3,658,661 - Xcc-8004.3784.1 0.17 +0.2
3,658,661 - Xcc-8004.3784.1 0.17 +1.3
3,659,227 - Xcc-8004.3784.1 0.35 +0.5
3,659,350 - Xcc-8004.3784.1 0.39 +1.1
3,659,784 + Xcc-8004.3784.1 0.53 +0.4
3,660,031 + Xcc-8004.3784.1 0.60 -0.8
3,660,394 - Xcc-8004.3784.1 0.72 -1.3
3,661,207 - +0.2
3,661,207 - -1.7
3,661,207 - -0.6
3,661,566 - Xcc-8004.3785.1 0.36 +0.8
3,661,722 - Xcc-8004.3785.1 0.55 -0.3
3,661,758 - Xcc-8004.3785.1 0.59 +0.0
3,661,758 - Xcc-8004.3785.1 0.59 +0.7
3,661,847 - Xcc-8004.3785.1 0.70 +0.7
3,661,929 - Xcc-8004.3785.1 0.80 +0.7
3,661,929 - Xcc-8004.3785.1 0.80 -0.7
3,661,971 - Xcc-8004.3785.1 0.85 +0.1
3,662,113 + +0.6
3,662,114 - +0.4
3,662,114 - +0.3

Or see this region's nucleotide sequence