Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3699.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
3,581,293	+				-0.3
3,581,294	-				+0.2
3,581,294	-				+0.7
3,581,297	+				+1.4
3,581,297	+				-0.8
3,581,297	+				-0.0
3,581,297	+				-0.1
3,581,298	-				+1.4
3,581,298	-				-0.3
3,581,496	+		Xcc-8004.3698.1	0.57	+0.1
3,581,581	+		Xcc-8004.3698.1	0.78	-0.4
3,581,710	+				-1.2
3,581,710	+				+0.4
3,581,710	+				+0.9
3,581,711	-				+0.5
3,581,715	-				+0.7
3,581,817	+				+0.1
3,581,834	+				-1.1
3,581,835	-				-0.1
3,581,904	-				+0.0
3,581,923	+				-0.1
3,581,923	+				-0.9
3,581,923	+				+0.0
3,581,924	-				+0.0
3,582,000	+				-0.3
3,582,103	+				-0.4
3,582,103	+				+1.3
3,582,104	-				-0.0
3,582,108	-				+1.4
3,582,130	+				+0.3
3,582,130	+				+0.2
3,582,299	-		Xcc-8004.3699.1	0.14	-1.0
3,582,299	-		Xcc-8004.3699.1	0.14	-1.8
3,582,503	-		Xcc-8004.3699.1	0.76	-1.1
3,582,521	-		Xcc-8004.3699.1	0.82	-0.5
3,582,521	-		Xcc-8004.3699.1	0.82	-0.5
3,582,567	+				+0.1
3,582,591	-				-0.8
3,582,591	-				+0.5
3,582,591	-				+0.9
3,582,651	-				+1.1
3,582,776	-				-0.5
3,582,887	+				+1.0
3,582,894	+				-1.7
3,582,959	+		Xcc-8004.3700.1	0.20	-1.3
3,582,959	+		Xcc-8004.3700.1	0.20	-0.1
3,582,959	+		Xcc-8004.3700.1	0.20	-1.7
3,583,010	+		Xcc-8004.3700.1	0.33	-0.8
3,583,010	+		Xcc-8004.3700.1	0.33	-0.8
3,583,217	+		Xcc-8004.3700.1	0.89	+0.7
3,583,218	-		Xcc-8004.3700.1	0.89	+0.0
3,583,218	-		Xcc-8004.3700.1	0.89	-1.6
3,583,218	-		Xcc-8004.3700.1	0.89	+0.0