Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3664.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3663.1 and Xcc-8004.3664.1 are separated by 407 nucleotidesXcc-8004.3664.1 and Xcc-8004.3665.1 are separated by 170 nucleotides Xcc-8004.3663.1: Xcc-8004.3663.1 - Beta N-acetyl-glucosaminidase (EC 3.2.1.52), at 3,542,155 to 3,543,150 Xcc-8004.3663.1 Xcc-8004.3664.1: Xcc-8004.3664.1 - photolyase protein family, at 3,543,558 to 3,545,147 Xcc-8004.3664.1 Xcc-8004.3665.1: Xcc-8004.3665.1 - COG3380: Amine oxidase, flavin-containing, at 3,545,318 to 3,546,325 Xcc-8004.3665.1 Position (kb) 3543 3544 3545 3546Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3542.706 kb on - strand, within Xcc-8004.3663.1at 3542.706 kb on - strand, within Xcc-8004.3663.1at 3542.706 kb on - strand, within Xcc-8004.3663.1at 3542.895 kb on - strand, within Xcc-8004.3663.1at 3542.895 kb on - strand, within Xcc-8004.3663.1at 3542.895 kb on - strand, within Xcc-8004.3663.1at 3542.895 kb on - strand, within Xcc-8004.3663.1at 3542.934 kb on - strand, within Xcc-8004.3663.1at 3543.308 kb on + strandat 3543.308 kb on + strandat 3543.309 kb on - strandat 3543.309 kb on - strandat 3543.331 kb on - strandat 3543.548 kb on - strandat 3543.548 kb on - strandat 3543.559 kb on + strandat 3543.560 kb on - strandat 3543.560 kb on - strandat 3543.647 kb on - strandat 3543.721 kb on + strand, within Xcc-8004.3664.1at 3543.721 kb on + strand, within Xcc-8004.3664.1at 3543.722 kb on - strand, within Xcc-8004.3664.1at 3543.722 kb on - strand, within Xcc-8004.3664.1at 3543.722 kb on - strand, within Xcc-8004.3664.1at 3543.779 kb on - strand, within Xcc-8004.3664.1at 3543.788 kb on + strand, within Xcc-8004.3664.1at 3543.789 kb on - strand, within Xcc-8004.3664.1at 3543.797 kb on + strand, within Xcc-8004.3664.1at 3543.797 kb on + strand, within Xcc-8004.3664.1at 3543.799 kb on + strand, within Xcc-8004.3664.1at 3543.799 kb on + strand, within Xcc-8004.3664.1at 3543.799 kb on + strand, within Xcc-8004.3664.1at 3543.800 kb on - strand, within Xcc-8004.3664.1at 3543.800 kb on - strand, within Xcc-8004.3664.1at 3543.800 kb on - strand, within Xcc-8004.3664.1at 3543.815 kb on + strand, within Xcc-8004.3664.1at 3543.816 kb on - strand, within Xcc-8004.3664.1at 3543.816 kb on - strand, within Xcc-8004.3664.1at 3543.816 kb on - strand, within Xcc-8004.3664.1at 3543.817 kb on + strand, within Xcc-8004.3664.1at 3543.817 kb on + strand, within Xcc-8004.3664.1at 3543.817 kb on + strand, within Xcc-8004.3664.1at 3543.817 kb on + strand, within Xcc-8004.3664.1at 3543.817 kb on + strand, within Xcc-8004.3664.1at 3543.817 kb on + strand, within Xcc-8004.3664.1at 3543.818 kb on - strand, within Xcc-8004.3664.1at 3543.818 kb on - strand, within Xcc-8004.3664.1at 3543.869 kb on + strand, within Xcc-8004.3664.1at 3543.869 kb on + strand, within Xcc-8004.3664.1at 3543.904 kb on + strand, within Xcc-8004.3664.1at 3543.904 kb on + strand, within Xcc-8004.3664.1at 3543.904 kb on + strand, within Xcc-8004.3664.1at 3543.905 kb on - strand, within Xcc-8004.3664.1at 3543.905 kb on - strand, within Xcc-8004.3664.1at 3543.905 kb on - strand, within Xcc-8004.3664.1at 3543.905 kb on - strand, within Xcc-8004.3664.1at 3543.916 kb on + strand, within Xcc-8004.3664.1at 3543.916 kb on + strand, within Xcc-8004.3664.1at 3544.007 kb on + strand, within Xcc-8004.3664.1at 3544.095 kb on + strand, within Xcc-8004.3664.1at 3544.095 kb on + strand, within Xcc-8004.3664.1at 3544.135 kb on + strand, within Xcc-8004.3664.1at 3544.135 kb on + strand, within Xcc-8004.3664.1at 3544.135 kb on + strand, within Xcc-8004.3664.1at 3544.136 kb on - strand, within Xcc-8004.3664.1at 3544.136 kb on - strand, within Xcc-8004.3664.1at 3544.136 kb on - strand, within Xcc-8004.3664.1at 3544.150 kb on + strand, within Xcc-8004.3664.1at 3544.151 kb on - strand, within Xcc-8004.3664.1at 3544.151 kb on - strand, within Xcc-8004.3664.1at 3544.334 kb on - strand, within Xcc-8004.3664.1at 3544.627 kb on + strand, within Xcc-8004.3664.1at 3544.674 kb on + strand, within Xcc-8004.3664.1at 3544.674 kb on + strand, within Xcc-8004.3664.1at 3544.674 kb on + strand, within Xcc-8004.3664.1at 3544.674 kb on + strand, within Xcc-8004.3664.1at 3544.790 kb on - strand, within Xcc-8004.3664.1at 3544.790 kb on - strand, within Xcc-8004.3664.1at 3544.810 kb on + strand, within Xcc-8004.3664.1at 3544.810 kb on + strand, within Xcc-8004.3664.1at 3544.810 kb on + strand, within Xcc-8004.3664.1at 3544.811 kb on - strand, within Xcc-8004.3664.1at 3544.879 kb on + strand, within Xcc-8004.3664.1at 3544.879 kb on + strand, within Xcc-8004.3664.1at 3544.880 kb on - strand, within Xcc-8004.3664.1at 3544.880 kb on - strand, within Xcc-8004.3664.1at 3544.880 kb on - strand, within Xcc-8004.3664.1at 3544.968 kb on + strand, within Xcc-8004.3664.1at 3544.968 kb on + strand, within Xcc-8004.3664.1at 3544.968 kb on + strand, within Xcc-8004.3664.1at 3544.968 kb on + strand, within Xcc-8004.3664.1at 3544.968 kb on + strand, within Xcc-8004.3664.1at 3544.968 kb on + strand, within Xcc-8004.3664.1at 3544.968 kb on + strand, within Xcc-8004.3664.1at 3544.969 kb on - strand, within Xcc-8004.3664.1at 3544.969 kb on - strand, within Xcc-8004.3664.1at 3544.969 kb on - strand, within Xcc-8004.3664.1at 3544.969 kb on - strand, within Xcc-8004.3664.1at 3544.969 kb on - strand, within Xcc-8004.3664.1at 3544.969 kb on - strand, within Xcc-8004.3664.1at 3544.969 kb on - strand, within Xcc-8004.3664.1at 3544.969 kb on - strand, within Xcc-8004.3664.1at 3544.972 kb on + strand, within Xcc-8004.3664.1at 3544.972 kb on + strand, within Xcc-8004.3664.1at 3544.972 kb on + strand, within Xcc-8004.3664.1at 3544.972 kb on + strand, within Xcc-8004.3664.1at 3544.972 kb on + strand, within Xcc-8004.3664.1at 3544.972 kb on + strand, within Xcc-8004.3664.1at 3544.973 kb on - strand, within Xcc-8004.3664.1at 3545.005 kb on + strandat 3545.005 kb on + strandat 3545.006 kb on - strandat 3545.006 kb on - strandat 3545.006 kb on - strandat 3545.006 kb on - strandat 3545.039 kb on + strandat 3545.039 kb on + strandat 3545.039 kb on + strandat 3545.039 kb on + strandat 3545.039 kb on + strandat 3545.039 kb on + strandat 3545.039 kb on + strandat 3545.039 kb on + strandat 3545.039 kb on + strandat 3545.039 kb on + strandat 3545.039 kb on + strandat 3545.039 kb on + strandat 3545.040 kb on - strandat 3545.040 kb on - strandat 3545.040 kb on - strandat 3545.040 kb on - strandat 3545.040 kb on - strandat 3545.040 kb on - strandat 3545.040 kb on - strandat 3545.040 kb on - strandat 3545.040 kb on - strandat 3545.040 kb on - strandat 3545.081 kb on + strandat 3545.081 kb on + strandat 3545.081 kb on + strandat 3545.276 kb on + strandat 3545.276 kb on + strandat 3545.276 kb on + strandat 3545.277 kb on - strandat 3545.341 kb on - strandat 3545.374 kb on + strandat 3545.374 kb on + strandat 3545.375 kb on - strandat 3545.731 kb on + strand, within Xcc-8004.3665.1at 3545.951 kb on + strand, within Xcc-8004.3665.1at 3546.141 kb on + strand, within Xcc-8004.3665.1at 3546.142 kb on - strand, within Xcc-8004.3665.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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3,542,706 - Xcc-8004.3663.1 0.55 -0.8
3,542,706 - Xcc-8004.3663.1 0.55 -0.9
3,542,706 - Xcc-8004.3663.1 0.55 -0.2
3,542,895 - Xcc-8004.3663.1 0.74 -0.8
3,542,895 - Xcc-8004.3663.1 0.74 -1.6
3,542,895 - Xcc-8004.3663.1 0.74 +0.9
3,542,895 - Xcc-8004.3663.1 0.74 -1.9
3,542,934 - Xcc-8004.3663.1 0.78 +3.1
3,543,308 + +0.0
3,543,308 + -0.1
3,543,309 - -1.8
3,543,309 - +0.3
3,543,331 - -0.3
3,543,548 - +0.9
3,543,548 - -0.3
3,543,559 + -1.7
3,543,560 - -0.3
3,543,560 - +0.2
3,543,647 - -1.0
3,543,721 + Xcc-8004.3664.1 0.10 +0.7
3,543,721 + Xcc-8004.3664.1 0.10 -0.6
3,543,722 - Xcc-8004.3664.1 0.10 +0.9
3,543,722 - Xcc-8004.3664.1 0.10 -0.7
3,543,722 - Xcc-8004.3664.1 0.10 -0.4
3,543,779 - Xcc-8004.3664.1 0.14 -0.7
3,543,788 + Xcc-8004.3664.1 0.14 -1.4
3,543,789 - Xcc-8004.3664.1 0.15 -0.1
3,543,797 + Xcc-8004.3664.1 0.15 -0.1
3,543,797 + Xcc-8004.3664.1 0.15 +0.2
3,543,799 + Xcc-8004.3664.1 0.15 +0.5
3,543,799 + Xcc-8004.3664.1 0.15 +0.3
3,543,799 + Xcc-8004.3664.1 0.15 -0.3
3,543,800 - Xcc-8004.3664.1 0.15 -0.8
3,543,800 - Xcc-8004.3664.1 0.15 +0.5
3,543,800 - Xcc-8004.3664.1 0.15 -0.1
3,543,815 + Xcc-8004.3664.1 0.16 +0.8
3,543,816 - Xcc-8004.3664.1 0.16 +0.4
3,543,816 - Xcc-8004.3664.1 0.16 -0.3
3,543,816 - Xcc-8004.3664.1 0.16 +1.3
3,543,817 + Xcc-8004.3664.1 0.16 +0.3
3,543,817 + Xcc-8004.3664.1 0.16 +0.0
3,543,817 + Xcc-8004.3664.1 0.16 -2.1
3,543,817 + Xcc-8004.3664.1 0.16 +0.2
3,543,817 + Xcc-8004.3664.1 0.16 +0.7
3,543,817 + Xcc-8004.3664.1 0.16 -0.0
3,543,818 - Xcc-8004.3664.1 0.16 -0.1
3,543,818 - Xcc-8004.3664.1 0.16 -0.9
3,543,869 + Xcc-8004.3664.1 0.20 +0.1
3,543,869 + Xcc-8004.3664.1 0.20 -0.4
3,543,904 + Xcc-8004.3664.1 0.22 -0.3
3,543,904 + Xcc-8004.3664.1 0.22 +0.4
3,543,904 + Xcc-8004.3664.1 0.22 +1.4
3,543,905 - Xcc-8004.3664.1 0.22 -1.0
3,543,905 - Xcc-8004.3664.1 0.22 +0.7
3,543,905 - Xcc-8004.3664.1 0.22 +0.2
3,543,905 - Xcc-8004.3664.1 0.22 -0.5
3,543,916 + Xcc-8004.3664.1 0.23 +0.3
3,543,916 + Xcc-8004.3664.1 0.23 +0.6
3,544,007 + Xcc-8004.3664.1 0.28 -0.1
3,544,095 + Xcc-8004.3664.1 0.34 -0.1
3,544,095 + Xcc-8004.3664.1 0.34 -0.0
3,544,135 + Xcc-8004.3664.1 0.36 +0.4
3,544,135 + Xcc-8004.3664.1 0.36 +0.7
3,544,135 + Xcc-8004.3664.1 0.36 +0.3
3,544,136 - Xcc-8004.3664.1 0.36 +0.6
3,544,136 - Xcc-8004.3664.1 0.36 +0.4
3,544,136 - Xcc-8004.3664.1 0.36 +0.8
3,544,150 + Xcc-8004.3664.1 0.37 -0.3
3,544,151 - Xcc-8004.3664.1 0.37 -0.3
3,544,151 - Xcc-8004.3664.1 0.37 +0.4
3,544,334 - Xcc-8004.3664.1 0.49 +0.2
3,544,627 + Xcc-8004.3664.1 0.67 +0.1
3,544,674 + Xcc-8004.3664.1 0.70 -0.1
3,544,674 + Xcc-8004.3664.1 0.70 -0.6
3,544,674 + Xcc-8004.3664.1 0.70 +2.2
3,544,674 + Xcc-8004.3664.1 0.70 +0.4
3,544,790 - Xcc-8004.3664.1 0.77 +0.7
3,544,790 - Xcc-8004.3664.1 0.77 +0.7
3,544,810 + Xcc-8004.3664.1 0.79 -0.5
3,544,810 + Xcc-8004.3664.1 0.79 +0.7
3,544,810 + Xcc-8004.3664.1 0.79 +1.7
3,544,811 - Xcc-8004.3664.1 0.79 -0.6
3,544,879 + Xcc-8004.3664.1 0.83 -0.6
3,544,879 + Xcc-8004.3664.1 0.83 -0.4
3,544,880 - Xcc-8004.3664.1 0.83 -0.1
3,544,880 - Xcc-8004.3664.1 0.83 -1.0
3,544,880 - Xcc-8004.3664.1 0.83 -0.9
3,544,968 + Xcc-8004.3664.1 0.89 +1.4
3,544,968 + Xcc-8004.3664.1 0.89 +0.4
3,544,968 + Xcc-8004.3664.1 0.89 -2.4
3,544,968 + Xcc-8004.3664.1 0.89 -1.1
3,544,968 + Xcc-8004.3664.1 0.89 +0.3
3,544,968 + Xcc-8004.3664.1 0.89 -1.7
3,544,968 + Xcc-8004.3664.1 0.89 +0.3
3,544,969 - Xcc-8004.3664.1 0.89 -0.2
3,544,969 - Xcc-8004.3664.1 0.89 -1.3
3,544,969 - Xcc-8004.3664.1 0.89 +0.0
3,544,969 - Xcc-8004.3664.1 0.89 +0.2
3,544,969 - Xcc-8004.3664.1 0.89 +0.3
3,544,969 - Xcc-8004.3664.1 0.89 -0.1
3,544,969 - Xcc-8004.3664.1 0.89 -1.0
3,544,969 - Xcc-8004.3664.1 0.89 -0.4
3,544,972 + Xcc-8004.3664.1 0.89 -2.0
3,544,972 + Xcc-8004.3664.1 0.89 +1.7
3,544,972 + Xcc-8004.3664.1 0.89 +0.1
3,544,972 + Xcc-8004.3664.1 0.89 +0.9
3,544,972 + Xcc-8004.3664.1 0.89 -0.9
3,544,972 + Xcc-8004.3664.1 0.89 -1.3
3,544,973 - Xcc-8004.3664.1 0.89 -0.0
3,545,005 + +0.1
3,545,005 + -0.5
3,545,006 - +0.5
3,545,006 - +1.4
3,545,006 - -1.8
3,545,006 - -0.3
3,545,039 + -0.2
3,545,039 + +0.0
3,545,039 + -1.3
3,545,039 + -0.8
3,545,039 + -0.4
3,545,039 + +0.6
3,545,039 + -0.5
3,545,039 + +1.3
3,545,039 + +0.8
3,545,039 + +0.1
3,545,039 + -1.2
3,545,039 + -0.5
3,545,040 - -0.6
3,545,040 - -0.3
3,545,040 - -0.6
3,545,040 - +1.2
3,545,040 - +1.2
3,545,040 - +0.5
3,545,040 - +0.6
3,545,040 - -0.6
3,545,040 - -0.2
3,545,040 - +0.2
3,545,081 + -1.0
3,545,081 + +0.7
3,545,081 + +0.6
3,545,276 + -0.2
3,545,276 + -0.6
3,545,276 + +0.7
3,545,277 - -0.4
3,545,341 - +0.5
3,545,374 + -0.1
3,545,374 + -1.5
3,545,375 - +1.0
3,545,731 + Xcc-8004.3665.1 0.41 +1.4
3,545,951 + Xcc-8004.3665.1 0.63 +0.1
3,546,141 + Xcc-8004.3665.1 0.82 +0.5
3,546,142 - Xcc-8004.3665.1 0.82 +0.5

Or see this region's nucleotide sequence