Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3661.1 and Xcc-8004.3662.1 are separated by 88 nucleotides Xcc-8004.3662.1 and Xcc-8004.3663.1 overlap by 1 nucleotides Xcc-8004.3663.1 and Xcc-8004.3664.1 are separated by 407 nucleotides
Xcc-8004.3661.1: Xcc-8004.3661.1 - 5'-methylthioadenosine phosphorylase (EC 2.4.2.28), at 3,540,760 to 3,541,512
Xcc-8004.3661.1
Xcc-8004.3662.1: Xcc-8004.3662.1 - Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8), at 3,541,601 to 3,542,155
Xcc-8004.3662.1
Xcc-8004.3663.1: Xcc-8004.3663.1 - Beta N-acetyl-glucosaminidase (EC 3.2.1.52), at 3,542,155 to 3,543,150
Xcc-8004.3663.1
Xcc-8004.3664.1: Xcc-8004.3664.1 - photolyase protein family, at 3,543,558 to 3,545,147
Xcc-8004.3664.1
Position (kb) 3542
3543
3544 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3541.178 kb on + strand, within Xcc-8004.3661.1 at 3541.179 kb on - strand, within Xcc-8004.3661.1 at 3541.179 kb on - strand, within Xcc-8004.3661.1 at 3541.179 kb on - strand, within Xcc-8004.3661.1 at 3541.304 kb on + strand, within Xcc-8004.3661.1 at 3541.304 kb on + strand, within Xcc-8004.3661.1 at 3541.305 kb on - strand, within Xcc-8004.3661.1 at 3541.305 kb on - strand, within Xcc-8004.3661.1 at 3541.463 kb on + strand at 3541.464 kb on - strand at 3541.464 kb on - strand at 3541.464 kb on - strand at 3541.464 kb on - strand at 3541.464 kb on - strand at 3541.589 kb on - strand at 3541.589 kb on - strand at 3541.603 kb on - strand at 3541.603 kb on - strand at 3542.706 kb on - strand, within Xcc-8004.3663.1 at 3542.706 kb on - strand, within Xcc-8004.3663.1 at 3542.706 kb on - strand, within Xcc-8004.3663.1 at 3542.895 kb on - strand, within Xcc-8004.3663.1 at 3542.895 kb on - strand, within Xcc-8004.3663.1 at 3542.895 kb on - strand, within Xcc-8004.3663.1 at 3542.895 kb on - strand, within Xcc-8004.3663.1 at 3542.934 kb on - strand, within Xcc-8004.3663.1 at 3543.308 kb on + strand at 3543.308 kb on + strand at 3543.309 kb on - strand at 3543.309 kb on - strand at 3543.331 kb on - strand at 3543.548 kb on - strand at 3543.548 kb on - strand at 3543.559 kb on + strand at 3543.560 kb on - strand at 3543.560 kb on - strand at 3543.647 kb on - strand at 3543.721 kb on + strand, within Xcc-8004.3664.1 at 3543.721 kb on + strand, within Xcc-8004.3664.1 at 3543.722 kb on - strand, within Xcc-8004.3664.1 at 3543.722 kb on - strand, within Xcc-8004.3664.1 at 3543.722 kb on - strand, within Xcc-8004.3664.1 at 3543.779 kb on - strand, within Xcc-8004.3664.1 at 3543.788 kb on + strand, within Xcc-8004.3664.1 at 3543.789 kb on - strand, within Xcc-8004.3664.1 at 3543.797 kb on + strand, within Xcc-8004.3664.1 at 3543.797 kb on + strand, within Xcc-8004.3664.1 at 3543.799 kb on + strand, within Xcc-8004.3664.1 at 3543.799 kb on + strand, within Xcc-8004.3664.1 at 3543.799 kb on + strand, within Xcc-8004.3664.1 at 3543.800 kb on - strand, within Xcc-8004.3664.1 at 3543.800 kb on - strand, within Xcc-8004.3664.1 at 3543.800 kb on - strand, within Xcc-8004.3664.1 at 3543.815 kb on + strand, within Xcc-8004.3664.1 at 3543.816 kb on - strand, within Xcc-8004.3664.1 at 3543.816 kb on - strand, within Xcc-8004.3664.1 at 3543.816 kb on - strand, within Xcc-8004.3664.1 at 3543.817 kb on + strand, within Xcc-8004.3664.1 at 3543.817 kb on + strand, within Xcc-8004.3664.1 at 3543.817 kb on + strand, within Xcc-8004.3664.1 at 3543.817 kb on + strand, within Xcc-8004.3664.1 at 3543.817 kb on + strand, within Xcc-8004.3664.1 at 3543.817 kb on + strand, within Xcc-8004.3664.1 at 3543.818 kb on - strand, within Xcc-8004.3664.1 at 3543.818 kb on - strand, within Xcc-8004.3664.1 at 3543.869 kb on + strand, within Xcc-8004.3664.1 at 3543.869 kb on + strand, within Xcc-8004.3664.1 at 3543.904 kb on + strand, within Xcc-8004.3664.1 at 3543.904 kb on + strand, within Xcc-8004.3664.1 at 3543.904 kb on + strand, within Xcc-8004.3664.1 at 3543.905 kb on - strand, within Xcc-8004.3664.1 at 3543.905 kb on - strand, within Xcc-8004.3664.1 at 3543.905 kb on - strand, within Xcc-8004.3664.1 at 3543.905 kb on - strand, within Xcc-8004.3664.1 at 3543.916 kb on + strand, within Xcc-8004.3664.1 at 3543.916 kb on + strand, within Xcc-8004.3664.1 at 3544.007 kb on + strand, within Xcc-8004.3664.1 at 3544.095 kb on + strand, within Xcc-8004.3664.1 at 3544.095 kb on + strand, within Xcc-8004.3664.1 at 3544.135 kb on + strand, within Xcc-8004.3664.1 at 3544.135 kb on + strand, within Xcc-8004.3664.1 at 3544.135 kb on + strand, within Xcc-8004.3664.1 at 3544.136 kb on - strand, within Xcc-8004.3664.1 at 3544.136 kb on - strand, within Xcc-8004.3664.1 at 3544.136 kb on - strand, within Xcc-8004.3664.1 at 3544.150 kb on + strand, within Xcc-8004.3664.1
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 3,541,178 + Xcc-8004.3661.1 0.56 -1.3 3,541,179 - Xcc-8004.3661.1 0.56 -1.1 3,541,179 - Xcc-8004.3661.1 0.56 -0.8 3,541,179 - Xcc-8004.3661.1 0.56 -0.4 3,541,304 + Xcc-8004.3661.1 0.72 -0.4 3,541,304 + Xcc-8004.3661.1 0.72 -1.7 3,541,305 - Xcc-8004.3661.1 0.72 -1.0 3,541,305 - Xcc-8004.3661.1 0.72 -0.5 3,541,463 + +1.2 3,541,464 - -1.0 3,541,464 - +0.0 3,541,464 - -1.0 3,541,464 - -2.5 3,541,464 - -1.1 3,541,589 - -0.1 3,541,589 - +1.3 3,541,603 - -0.2 3,541,603 - +0.6 3,542,706 - Xcc-8004.3663.1 0.55 -0.8 3,542,706 - Xcc-8004.3663.1 0.55 -0.9 3,542,706 - Xcc-8004.3663.1 0.55 -0.2 3,542,895 - Xcc-8004.3663.1 0.74 -0.8 3,542,895 - Xcc-8004.3663.1 0.74 -1.6 3,542,895 - Xcc-8004.3663.1 0.74 +0.9 3,542,895 - Xcc-8004.3663.1 0.74 -1.9 3,542,934 - Xcc-8004.3663.1 0.78 +3.1 3,543,308 + +0.0 3,543,308 + -0.1 3,543,309 - -1.8 3,543,309 - +0.3 3,543,331 - -0.3 3,543,548 - +0.9 3,543,548 - -0.3 3,543,559 + -1.7 3,543,560 - -0.3 3,543,560 - +0.2 3,543,647 - -1.0 3,543,721 + Xcc-8004.3664.1 0.10 +0.7 3,543,721 + Xcc-8004.3664.1 0.10 -0.6 3,543,722 - Xcc-8004.3664.1 0.10 +0.9 3,543,722 - Xcc-8004.3664.1 0.10 -0.7 3,543,722 - Xcc-8004.3664.1 0.10 -0.4 3,543,779 - Xcc-8004.3664.1 0.14 -0.7 3,543,788 + Xcc-8004.3664.1 0.14 -1.4 3,543,789 - Xcc-8004.3664.1 0.15 -0.1 3,543,797 + Xcc-8004.3664.1 0.15 -0.1 3,543,797 + Xcc-8004.3664.1 0.15 +0.2 3,543,799 + Xcc-8004.3664.1 0.15 +0.5 3,543,799 + Xcc-8004.3664.1 0.15 +0.3 3,543,799 + Xcc-8004.3664.1 0.15 -0.3 3,543,800 - Xcc-8004.3664.1 0.15 -0.8 3,543,800 - Xcc-8004.3664.1 0.15 +0.5 3,543,800 - Xcc-8004.3664.1 0.15 -0.1 3,543,815 + Xcc-8004.3664.1 0.16 +0.8 3,543,816 - Xcc-8004.3664.1 0.16 +0.4 3,543,816 - Xcc-8004.3664.1 0.16 -0.3 3,543,816 - Xcc-8004.3664.1 0.16 +1.3 3,543,817 + Xcc-8004.3664.1 0.16 +0.3 3,543,817 + Xcc-8004.3664.1 0.16 +0.0 3,543,817 + Xcc-8004.3664.1 0.16 -2.1 3,543,817 + Xcc-8004.3664.1 0.16 +0.2 3,543,817 + Xcc-8004.3664.1 0.16 +0.7 3,543,817 + Xcc-8004.3664.1 0.16 -0.0 3,543,818 - Xcc-8004.3664.1 0.16 -0.1 3,543,818 - Xcc-8004.3664.1 0.16 -0.9 3,543,869 + Xcc-8004.3664.1 0.20 +0.1 3,543,869 + Xcc-8004.3664.1 0.20 -0.4 3,543,904 + Xcc-8004.3664.1 0.22 -0.3 3,543,904 + Xcc-8004.3664.1 0.22 +0.4 3,543,904 + Xcc-8004.3664.1 0.22 +1.4 3,543,905 - Xcc-8004.3664.1 0.22 -1.0 3,543,905 - Xcc-8004.3664.1 0.22 +0.7 3,543,905 - Xcc-8004.3664.1 0.22 +0.2 3,543,905 - Xcc-8004.3664.1 0.22 -0.5 3,543,916 + Xcc-8004.3664.1 0.23 +0.3 3,543,916 + Xcc-8004.3664.1 0.23 +0.6 3,544,007 + Xcc-8004.3664.1 0.28 -0.1 3,544,095 + Xcc-8004.3664.1 0.34 -0.1 3,544,095 + Xcc-8004.3664.1 0.34 -0.0 3,544,135 + Xcc-8004.3664.1 0.36 +0.4 3,544,135 + Xcc-8004.3664.1 0.36 +0.7 3,544,135 + Xcc-8004.3664.1 0.36 +0.3 3,544,136 - Xcc-8004.3664.1 0.36 +0.6 3,544,136 - Xcc-8004.3664.1 0.36 +0.4 3,544,136 - Xcc-8004.3664.1 0.36 +0.8 3,544,150 + Xcc-8004.3664.1 0.37 -0.3
Or see this region's nucleotide sequence