Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3623.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3622.1 and Xcc-8004.3623.1 are separated by 180 nucleotidesXcc-8004.3623.1 and Xcc-8004.3624.1 are separated by 422 nucleotides Xcc-8004.3622.1: Xcc-8004.3622.1 - MFS transporter, at 3,507,762 to 3,509,036 Xcc-8004.3622.1 Xcc-8004.3623.1: Xcc-8004.3623.1 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 3,509,217 to 3,510,311 Xcc-8004.3623.1 Xcc-8004.3624.1: Xcc-8004.3624.1 - FIG01210604: hypothetical protein, at 3,510,734 to 3,511,783 Xcc-8004.3624.1 Position (kb) 3509 3510 3511Strain fitness (log2 ratio) -2 -1 0 1 2at 3508.264 kb on + strand, within Xcc-8004.3622.1at 3508.264 kb on + strand, within Xcc-8004.3622.1at 3508.264 kb on + strand, within Xcc-8004.3622.1at 3508.264 kb on + strand, within Xcc-8004.3622.1at 3508.264 kb on + strand, within Xcc-8004.3622.1at 3508.265 kb on - strand, within Xcc-8004.3622.1at 3508.265 kb on - strand, within Xcc-8004.3622.1at 3508.448 kb on - strand, within Xcc-8004.3622.1at 3508.603 kb on + strand, within Xcc-8004.3622.1at 3508.604 kb on - strand, within Xcc-8004.3622.1at 3508.604 kb on - strand, within Xcc-8004.3622.1at 3508.654 kb on + strand, within Xcc-8004.3622.1at 3508.654 kb on + strand, within Xcc-8004.3622.1at 3508.654 kb on + strand, within Xcc-8004.3622.1at 3508.654 kb on + strand, within Xcc-8004.3622.1at 3508.655 kb on - strand, within Xcc-8004.3622.1at 3508.655 kb on - strand, within Xcc-8004.3622.1at 3508.693 kb on + strand, within Xcc-8004.3622.1at 3508.693 kb on + strand, within Xcc-8004.3622.1at 3508.693 kb on + strand, within Xcc-8004.3622.1at 3508.693 kb on + strand, within Xcc-8004.3622.1at 3508.693 kb on + strand, within Xcc-8004.3622.1at 3508.693 kb on + strand, within Xcc-8004.3622.1at 3508.693 kb on + strand, within Xcc-8004.3622.1at 3508.694 kb on - strand, within Xcc-8004.3622.1at 3508.694 kb on - strand, within Xcc-8004.3622.1at 3508.694 kb on - strand, within Xcc-8004.3622.1at 3508.694 kb on - strand, within Xcc-8004.3622.1at 3508.786 kb on + strand, within Xcc-8004.3622.1at 3508.786 kb on + strand, within Xcc-8004.3622.1at 3508.924 kb on + strandat 3508.924 kb on + strandat 3508.924 kb on + strandat 3508.925 kb on - strandat 3508.925 kb on - strandat 3509.091 kb on + strandat 3509.091 kb on + strandat 3509.091 kb on + strandat 3509.092 kb on - strandat 3509.161 kb on + strandat 3509.161 kb on + strandat 3509.161 kb on + strandat 3509.161 kb on + strandat 3509.161 kb on + strandat 3509.161 kb on + strandat 3509.162 kb on - strandat 3509.162 kb on - strandat 3509.162 kb on - strandat 3509.162 kb on - strandat 3509.162 kb on - strandat 3509.162 kb on - strandat 3509.162 kb on - strandat 3509.162 kb on - strandat 3509.185 kb on + strandat 3509.185 kb on + strandat 3509.186 kb on - strandat 3509.186 kb on - strandat 3509.355 kb on + strand, within Xcc-8004.3623.1at 3509.355 kb on + strand, within Xcc-8004.3623.1at 3509.356 kb on - strand, within Xcc-8004.3623.1at 3509.358 kb on + strand, within Xcc-8004.3623.1at 3509.358 kb on + strand, within Xcc-8004.3623.1at 3509.358 kb on + strand, within Xcc-8004.3623.1at 3509.358 kb on + strand, within Xcc-8004.3623.1at 3509.358 kb on + strand, within Xcc-8004.3623.1at 3509.358 kb on + strand, within Xcc-8004.3623.1at 3509.359 kb on - strand, within Xcc-8004.3623.1at 3509.359 kb on - strand, within Xcc-8004.3623.1at 3509.359 kb on - strand, within Xcc-8004.3623.1at 3509.359 kb on - strand, within Xcc-8004.3623.1at 3509.359 kb on - strand, within Xcc-8004.3623.1at 3509.359 kb on - strand, within Xcc-8004.3623.1at 3509.427 kb on + strand, within Xcc-8004.3623.1at 3509.428 kb on - strand, within Xcc-8004.3623.1at 3509.591 kb on + strand, within Xcc-8004.3623.1at 3509.697 kb on + strand, within Xcc-8004.3623.1at 3509.698 kb on - strand, within Xcc-8004.3623.1at 3509.818 kb on - strand, within Xcc-8004.3623.1at 3509.931 kb on + strand, within Xcc-8004.3623.1at 3509.931 kb on + strand, within Xcc-8004.3623.1at 3509.931 kb on + strand, within Xcc-8004.3623.1at 3509.931 kb on + strand, within Xcc-8004.3623.1at 3509.932 kb on - strand, within Xcc-8004.3623.1at 3509.932 kb on - strand, within Xcc-8004.3623.1at 3509.932 kb on - strand, within Xcc-8004.3623.1at 3509.932 kb on - strand, within Xcc-8004.3623.1at 3509.932 kb on - strand, within Xcc-8004.3623.1at 3509.932 kb on - strand, within Xcc-8004.3623.1at 3509.932 kb on - strand, within Xcc-8004.3623.1at 3509.932 kb on - strand, within Xcc-8004.3623.1at 3509.932 kb on - strand, within Xcc-8004.3623.1at 3510.067 kb on - strand, within Xcc-8004.3623.1at 3510.117 kb on + strand, within Xcc-8004.3623.1at 3510.117 kb on + strand, within Xcc-8004.3623.1at 3510.118 kb on - strand, within Xcc-8004.3623.1at 3510.186 kb on + strand, within Xcc-8004.3623.1at 3510.186 kb on + strand, within Xcc-8004.3623.1at 3510.186 kb on + strand, within Xcc-8004.3623.1at 3510.186 kb on + strand, within Xcc-8004.3623.1at 3510.187 kb on - strand, within Xcc-8004.3623.1at 3510.187 kb on - strand, within Xcc-8004.3623.1at 3510.187 kb on - strand, within Xcc-8004.3623.1at 3510.187 kb on - strand, within Xcc-8004.3623.1at 3510.187 kb on - strand, within Xcc-8004.3623.1at 3510.187 kb on - strand, within Xcc-8004.3623.1at 3510.187 kb on - strand, within Xcc-8004.3623.1at 3510.187 kb on - strand, within Xcc-8004.3623.1at 3510.208 kb on + strandat 3510.261 kb on + strandat 3510.261 kb on + strandat 3510.262 kb on - strandat 3510.282 kb on + strandat 3510.282 kb on + strandat 3510.283 kb on - strandat 3510.651 kb on + strandat 3510.652 kb on - strandat 3510.938 kb on + strand, within Xcc-8004.3624.1at 3510.938 kb on + strand, within Xcc-8004.3624.1at 3510.945 kb on - strand, within Xcc-8004.3624.1at 3511.061 kb on + strand, within Xcc-8004.3624.1at 3511.061 kb on + strand, within Xcc-8004.3624.1at 3511.061 kb on + strand, within Xcc-8004.3624.1at 3511.062 kb on - strand, within Xcc-8004.3624.1at 3511.062 kb on - strand, within Xcc-8004.3624.1at 3511.062 kb on - strand, within Xcc-8004.3624.1at 3511.062 kb on - strand, within Xcc-8004.3624.1at 3511.221 kb on + strand, within Xcc-8004.3624.1at 3511.221 kb on + strand, within Xcc-8004.3624.1at 3511.221 kb on + strand, within Xcc-8004.3624.1at 3511.221 kb on + strand, within Xcc-8004.3624.1at 3511.221 kb on + strand, within Xcc-8004.3624.1at 3511.221 kb on + strand, within Xcc-8004.3624.1at 3511.221 kb on + strand, within Xcc-8004.3624.1at 3511.222 kb on - strand, within Xcc-8004.3624.1at 3511.222 kb on - strand, within Xcc-8004.3624.1at 3511.222 kb on - strand, within Xcc-8004.3624.1at 3511.222 kb on - strand, within Xcc-8004.3624.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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3,508,264 + Xcc-8004.3622.1 0.39 -0.3
3,508,264 + Xcc-8004.3622.1 0.39 -1.7
3,508,264 + Xcc-8004.3622.1 0.39 +0.2
3,508,264 + Xcc-8004.3622.1 0.39 +0.2
3,508,264 + Xcc-8004.3622.1 0.39 +0.0
3,508,265 - Xcc-8004.3622.1 0.39 +1.0
3,508,265 - Xcc-8004.3622.1 0.39 -0.4
3,508,448 - Xcc-8004.3622.1 0.54 +1.2
3,508,603 + Xcc-8004.3622.1 0.66 -0.6
3,508,604 - Xcc-8004.3622.1 0.66 -0.8
3,508,604 - Xcc-8004.3622.1 0.66 +0.5
3,508,654 + Xcc-8004.3622.1 0.70 +0.6
3,508,654 + Xcc-8004.3622.1 0.70 +0.8
3,508,654 + Xcc-8004.3622.1 0.70 +0.3
3,508,654 + Xcc-8004.3622.1 0.70 +0.6
3,508,655 - Xcc-8004.3622.1 0.70 +0.1
3,508,655 - Xcc-8004.3622.1 0.70 +1.0
3,508,693 + Xcc-8004.3622.1 0.73 -1.3
3,508,693 + Xcc-8004.3622.1 0.73 +0.1
3,508,693 + Xcc-8004.3622.1 0.73 -0.3
3,508,693 + Xcc-8004.3622.1 0.73 +0.5
3,508,693 + Xcc-8004.3622.1 0.73 +1.0
3,508,693 + Xcc-8004.3622.1 0.73 +0.3
3,508,693 + Xcc-8004.3622.1 0.73 +0.5
3,508,694 - Xcc-8004.3622.1 0.73 -2.2
3,508,694 - Xcc-8004.3622.1 0.73 -0.8
3,508,694 - Xcc-8004.3622.1 0.73 -1.5
3,508,694 - Xcc-8004.3622.1 0.73 +1.7
3,508,786 + Xcc-8004.3622.1 0.80 +0.7
3,508,786 + Xcc-8004.3622.1 0.80 +0.2
3,508,924 + +0.1
3,508,924 + -0.4
3,508,924 + +0.9
3,508,925 - -0.3
3,508,925 - -2.2
3,509,091 + +0.5
3,509,091 + -0.5
3,509,091 + -0.1
3,509,092 - +0.6
3,509,161 + +0.2
3,509,161 + +0.3
3,509,161 + +1.5
3,509,161 + +0.5
3,509,161 + +0.8
3,509,161 + +0.8
3,509,162 - -1.3
3,509,162 - +1.2
3,509,162 - +0.7
3,509,162 - -0.3
3,509,162 - +0.2
3,509,162 - +0.9
3,509,162 - -0.5
3,509,162 - +1.5
3,509,185 + -0.8
3,509,185 + +0.8
3,509,186 - +0.0
3,509,186 - -0.4
3,509,355 + Xcc-8004.3623.1 0.13 +0.1
3,509,355 + Xcc-8004.3623.1 0.13 -0.8
3,509,356 - Xcc-8004.3623.1 0.13 +0.1
3,509,358 + Xcc-8004.3623.1 0.13 +0.4
3,509,358 + Xcc-8004.3623.1 0.13 -0.1
3,509,358 + Xcc-8004.3623.1 0.13 +0.1
3,509,358 + Xcc-8004.3623.1 0.13 -0.8
3,509,358 + Xcc-8004.3623.1 0.13 -0.1
3,509,358 + Xcc-8004.3623.1 0.13 -0.0
3,509,359 - Xcc-8004.3623.1 0.13 -0.7
3,509,359 - Xcc-8004.3623.1 0.13 +0.5
3,509,359 - Xcc-8004.3623.1 0.13 +0.2
3,509,359 - Xcc-8004.3623.1 0.13 +0.8
3,509,359 - Xcc-8004.3623.1 0.13 -0.3
3,509,359 - Xcc-8004.3623.1 0.13 +0.6
3,509,427 + Xcc-8004.3623.1 0.19 -0.1
3,509,428 - Xcc-8004.3623.1 0.19 +0.2
3,509,591 + Xcc-8004.3623.1 0.34 -1.1
3,509,697 + Xcc-8004.3623.1 0.44 -0.5
3,509,698 - Xcc-8004.3623.1 0.44 -0.4
3,509,818 - Xcc-8004.3623.1 0.55 -0.7
3,509,931 + Xcc-8004.3623.1 0.65 -1.0
3,509,931 + Xcc-8004.3623.1 0.65 +0.2
3,509,931 + Xcc-8004.3623.1 0.65 -0.1
3,509,931 + Xcc-8004.3623.1 0.65 +0.2
3,509,932 - Xcc-8004.3623.1 0.65 -0.7
3,509,932 - Xcc-8004.3623.1 0.65 +0.7
3,509,932 - Xcc-8004.3623.1 0.65 +0.6
3,509,932 - Xcc-8004.3623.1 0.65 +0.7
3,509,932 - Xcc-8004.3623.1 0.65 +0.7
3,509,932 - Xcc-8004.3623.1 0.65 -0.5
3,509,932 - Xcc-8004.3623.1 0.65 -0.2
3,509,932 - Xcc-8004.3623.1 0.65 +0.3
3,509,932 - Xcc-8004.3623.1 0.65 +0.9
3,510,067 - Xcc-8004.3623.1 0.78 -1.0
3,510,117 + Xcc-8004.3623.1 0.82 -0.6
3,510,117 + Xcc-8004.3623.1 0.82 -0.3
3,510,118 - Xcc-8004.3623.1 0.82 -1.3
3,510,186 + Xcc-8004.3623.1 0.88 -0.0
3,510,186 + Xcc-8004.3623.1 0.88 -0.7
3,510,186 + Xcc-8004.3623.1 0.88 -0.7
3,510,186 + Xcc-8004.3623.1 0.88 -0.9
3,510,187 - Xcc-8004.3623.1 0.89 +1.9
3,510,187 - Xcc-8004.3623.1 0.89 -0.1
3,510,187 - Xcc-8004.3623.1 0.89 -0.7
3,510,187 - Xcc-8004.3623.1 0.89 -0.6
3,510,187 - Xcc-8004.3623.1 0.89 -1.0
3,510,187 - Xcc-8004.3623.1 0.89 +0.3
3,510,187 - Xcc-8004.3623.1 0.89 +0.6
3,510,187 - Xcc-8004.3623.1 0.89 +0.2
3,510,208 + -0.8
3,510,261 + -0.8
3,510,261 + -0.3
3,510,262 - -0.5
3,510,282 + +0.4
3,510,282 + +1.1
3,510,283 - +0.5
3,510,651 + +1.1
3,510,652 - -0.1
3,510,938 + Xcc-8004.3624.1 0.19 +0.2
3,510,938 + Xcc-8004.3624.1 0.19 -0.1
3,510,945 - Xcc-8004.3624.1 0.20 +0.6
3,511,061 + Xcc-8004.3624.1 0.31 -0.2
3,511,061 + Xcc-8004.3624.1 0.31 +0.5
3,511,061 + Xcc-8004.3624.1 0.31 -1.3
3,511,062 - Xcc-8004.3624.1 0.31 +0.3
3,511,062 - Xcc-8004.3624.1 0.31 +0.8
3,511,062 - Xcc-8004.3624.1 0.31 -0.1
3,511,062 - Xcc-8004.3624.1 0.31 -1.3
3,511,221 + Xcc-8004.3624.1 0.46 +1.0
3,511,221 + Xcc-8004.3624.1 0.46 -0.0
3,511,221 + Xcc-8004.3624.1 0.46 +0.6
3,511,221 + Xcc-8004.3624.1 0.46 -0.7
3,511,221 + Xcc-8004.3624.1 0.46 +1.0
3,511,221 + Xcc-8004.3624.1 0.46 +0.4
3,511,221 + Xcc-8004.3624.1 0.46 +0.7
3,511,222 - Xcc-8004.3624.1 0.46 -0.7
3,511,222 - Xcc-8004.3624.1 0.46 -1.0
3,511,222 - Xcc-8004.3624.1 0.46 -1.1
3,511,222 - Xcc-8004.3624.1 0.46 -0.2

Or see this region's nucleotide sequence