Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3621.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
3,506,411	+				+0.9
3,506,445	+		Xcc-8004.3619.1	0.24	-0.2
3,506,446	-		Xcc-8004.3619.1	0.25	+0.9
3,506,446	-		Xcc-8004.3619.1	0.25	-0.4
3,506,446	-		Xcc-8004.3619.1	0.25	-1.1
3,506,463	+		Xcc-8004.3619.1	0.33	-0.6
3,506,463	+		Xcc-8004.3619.1	0.33	+0.6
3,506,464	-		Xcc-8004.3619.1	0.33	-0.7
3,506,473	+		Xcc-8004.3619.1	0.38	-0.1
3,506,473	+		Xcc-8004.3619.1	0.38	+0.0
3,506,473	+		Xcc-8004.3619.1	0.38	-1.1
3,506,474	-		Xcc-8004.3619.1	0.38	+0.1
3,506,474	-		Xcc-8004.3619.1	0.38	-1.0
3,506,474	-		Xcc-8004.3619.1	0.38	-0.1
3,506,542	-		Xcc-8004.3619.1	0.70	-1.2
3,506,548	+		Xcc-8004.3619.1	0.73	+0.7
3,506,549	-		Xcc-8004.3619.1	0.73	-1.6
3,506,549	-		Xcc-8004.3619.1	0.73	+1.1
3,506,590	+				-0.5
3,506,590	+				-0.5
3,506,590	+				-0.3
3,506,590	+				+1.3
3,506,590	+				+1.0
3,506,590	+				+0.3
3,506,590	+				-0.2
3,506,590	+				+1.0
3,506,590	+				+0.7
3,506,591	-				-0.1
3,506,591	-				-0.3
3,506,591	-				+0.9
3,506,591	-				-0.8
3,506,591	-				-1.1
3,506,594	-				-0.0
3,506,601	+				-0.5
3,506,602	-				-0.8
3,506,669	-				+0.3
3,506,713	+				-0.4
3,506,713	+				-0.6
3,506,716	+				-0.4
3,506,716	+				+0.3
3,506,716	+				+1.4
3,506,717	-				-0.4
3,506,890	+		Xcc-8004.3620.1	0.38	+1.1
3,506,890	+		Xcc-8004.3620.1	0.38	-0.5
3,506,891	-		Xcc-8004.3620.1	0.39	-0.8
3,506,897	-		Xcc-8004.3620.1	0.40	-0.6
3,506,897	-		Xcc-8004.3620.1	0.40	-0.8
3,506,897	-		Xcc-8004.3620.1	0.40	-1.0
3,506,932	+		Xcc-8004.3620.1	0.48	-1.6
3,506,933	-		Xcc-8004.3620.1	0.48	-0.7
3,506,933	-		Xcc-8004.3620.1	0.48	-1.1
3,507,097	+		Xcc-8004.3620.1	0.84	-0.2
3,507,097	+		Xcc-8004.3620.1	0.84	-0.3
3,507,143	+				-0.9
3,507,144	-				+1.0
3,507,170	+				-0.8
3,507,170	+				+0.7
3,507,170	+				-0.7
3,507,170	+				-0.2
3,507,170	+				+0.2
3,507,170	+				+0.3
3,507,170	+				+0.1
3,507,170	+				-0.1
3,507,170	+				+0.5
3,507,170	+				-1.3
3,507,170	+				-0.7
3,507,171	-				+0.7
3,507,171	-				+0.7
3,507,171	-				+1.3
3,507,171	-				+0.0
3,507,171	-				-0.3
3,507,171	-				+0.2
3,507,171	-				-0.6
3,507,171	-				-1.6
3,507,171	-				+0.2
3,507,171	-				-1.8
3,507,171	-				+0.3
3,507,171	-				-1.4
3,507,171	-				+0.2
3,507,171	-				+0.4
3,507,217	-				-0.1
3,507,217	-				-0.1
3,507,217	-				+1.3
3,507,217	-				-3.2
3,507,310	-				+1.1
3,507,310	-				-0.4
3,507,654	+				+0.2
3,507,654	+				+0.6
3,507,654	+				+0.2
3,507,654	+				-0.9
3,507,654	+				-1.6
3,507,654	+				+0.3
3,507,655	-				-1.0
3,507,655	-				+0.5
3,507,655	-				-0.1
3,507,655	-				-0.0
3,507,712	-				+0.5
3,507,712	-				-0.3
3,507,712	-				-0.4
3,507,720	+				+0.8
3,507,720	+				-1.1
3,507,721	-				+0.4
3,507,721	-				+0.2
3,507,721	-				+0.0
3,507,730	-				+0.2
3,507,753	+				-0.3
3,507,753	+				+0.2
3,507,754	-				+0.2
3,507,763	+				-0.6
3,507,763	+				+0.1
3,507,764	-				+1.2
3,507,764	-				-0.8
3,507,764	-				-0.4
3,507,764	-				-0.7
3,507,766	+				+0.9
3,507,766	+				-0.8
3,507,767	-				-0.0
3,507,767	-				-1.4
3,507,767	-				+0.4
3,507,767	-				+0.2
3,507,767	-				-1.5
3,507,767	-				-0.5
3,507,767	-				-0.3
3,507,767	-				-1.1
3,507,818	-				-0.1
3,507,818	-				-0.9
3,507,857	-				-0.3
3,507,857	-				-0.6
3,508,264	+		Xcc-8004.3622.1	0.39	-0.3
3,508,264	+		Xcc-8004.3622.1	0.39	-1.7
3,508,264	+		Xcc-8004.3622.1	0.39	+0.2
3,508,264	+		Xcc-8004.3622.1	0.39	+0.2
3,508,264	+		Xcc-8004.3622.1	0.39	+0.0
3,508,265	-		Xcc-8004.3622.1	0.39	+1.0
3,508,265	-		Xcc-8004.3622.1	0.39	-0.4
3,508,448	-		Xcc-8004.3622.1	0.54	+1.2