Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.354.1 and Xcc-8004.355.1 are separated by 161 nucleotides Xcc-8004.355.1 and Xcc-8004.356.1 are separated by 136 nucleotides Xcc-8004.356.1 and Xcc-8004.357.1 are separated by 57 nucleotides Xcc-8004.357.1 and Xcc-8004.358.1 are separated by 116 nucleotides
Xcc-8004.354.1: Xcc-8004.354.1 - macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif., at 338,123 to 340,624
Xcc-8004.354.1
Xcc-8004.355.1: Xcc-8004.355.1 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 340,786 to 342,903
Xcc-8004.355.1
Xcc-8004.356.1: Xcc-8004.356.1 - hypothetical protein, at 343,040 to 343,153
Xcc-8004.356.1
Xcc-8004.357.1: Xcc-8004.357.1 - FIG01210225: hypothetical protein, at 343,211 to 343,684
Xcc-8004.357.1
Xcc-8004.358.1: Xcc-8004.358.1 - 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17), at 343,801 to 344,133
Xcc-8004.358.1
Position (kb) 340
341
342
343 Strain fitness (log2 ratio) -2
-1
0
1 at 339.815 kb on + strand, within Xcc-8004.354.1 at 340.077 kb on + strand, within Xcc-8004.354.1 at 340.759 kb on + strand at 340.759 kb on + strand at 340.759 kb on + strand at 340.759 kb on + strand at 340.759 kb on + strand at 340.760 kb on - strand at 340.760 kb on - strand at 340.760 kb on - strand at 340.760 kb on - strand at 340.760 kb on - strand at 340.760 kb on - strand at 340.760 kb on - strand at 340.760 kb on - strand at 340.760 kb on - strand at 340.785 kb on + strand at 340.785 kb on + strand at 340.785 kb on + strand at 340.785 kb on + strand at 340.786 kb on - strand at 341.173 kb on + strand, within Xcc-8004.355.1 at 341.173 kb on + strand, within Xcc-8004.355.1 at 341.173 kb on + strand, within Xcc-8004.355.1 at 341.174 kb on - strand, within Xcc-8004.355.1 at 341.174 kb on - strand, within Xcc-8004.355.1 at 341.209 kb on + strand, within Xcc-8004.355.1 at 341.353 kb on + strand, within Xcc-8004.355.1 at 341.353 kb on + strand, within Xcc-8004.355.1 at 341.354 kb on - strand, within Xcc-8004.355.1 at 341.354 kb on - strand, within Xcc-8004.355.1 at 341.354 kb on - strand, within Xcc-8004.355.1 at 341.354 kb on - strand, within Xcc-8004.355.1 at 341.354 kb on - strand, within Xcc-8004.355.1 at 341.657 kb on - strand, within Xcc-8004.355.1 at 341.657 kb on - strand, within Xcc-8004.355.1 at 341.914 kb on + strand, within Xcc-8004.355.1 at 341.914 kb on + strand, within Xcc-8004.355.1 at 341.914 kb on + strand, within Xcc-8004.355.1 at 341.915 kb on - strand, within Xcc-8004.355.1 at 341.915 kb on - strand, within Xcc-8004.355.1 at 342.252 kb on + strand, within Xcc-8004.355.1 at 342.252 kb on + strand, within Xcc-8004.355.1 at 342.252 kb on + strand, within Xcc-8004.355.1 at 342.253 kb on - strand, within Xcc-8004.355.1 at 342.253 kb on - strand, within Xcc-8004.355.1 at 342.253 kb on - strand, within Xcc-8004.355.1 at 342.253 kb on - strand, within Xcc-8004.355.1 at 342.444 kb on + strand, within Xcc-8004.355.1 at 342.468 kb on - strand, within Xcc-8004.355.1 at 343.140 kb on + strand, within Xcc-8004.356.1 at 343.140 kb on + strand, within Xcc-8004.356.1 at 343.141 kb on - strand, within Xcc-8004.356.1 at 343.141 kb on - strand, within Xcc-8004.356.1 at 343.141 kb on - strand, within Xcc-8004.356.1 at 343.141 kb on - strand, within Xcc-8004.356.1 at 343.259 kb on + strand, within Xcc-8004.357.1 at 343.260 kb on - strand, within Xcc-8004.357.1 at 343.617 kb on + strand, within Xcc-8004.357.1 at 343.650 kb on + strand at 343.650 kb on + strand at 343.651 kb on - strand at 343.651 kb on - strand at 343.667 kb on + strand at 343.667 kb on + strand at 343.667 kb on + strand at 343.668 kb on - strand at 343.668 kb on - strand at 343.668 kb on - strand at 343.668 kb on - strand at 343.668 kb on - strand at 343.668 kb on - strand at 343.728 kb on + strand at 343.729 kb on - strand at 343.814 kb on + strand at 343.823 kb on + strand at 343.823 kb on + strand at 343.824 kb on - strand at 343.824 kb on - strand at 343.856 kb on + strand, within Xcc-8004.358.1 at 343.873 kb on + strand, within Xcc-8004.358.1 at 343.874 kb on - strand, within Xcc-8004.358.1 at 343.874 kb on - strand, within Xcc-8004.358.1
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 339,815 + Xcc-8004.354.1 0.68 -0.3 340,077 + Xcc-8004.354.1 0.78 -0.5 340,759 + -1.6 340,759 + -0.3 340,759 + +0.4 340,759 + +1.0 340,759 + +0.2 340,760 - +0.6 340,760 - -0.0 340,760 - +1.3 340,760 - -0.2 340,760 - -0.3 340,760 - +0.2 340,760 - +0.1 340,760 - -0.4 340,760 - -0.2 340,785 + -1.9 340,785 + +0.9 340,785 + +0.1 340,785 + -0.2 340,786 - -2.3 341,173 + Xcc-8004.355.1 0.18 -0.4 341,173 + Xcc-8004.355.1 0.18 -0.2 341,173 + Xcc-8004.355.1 0.18 +0.2 341,174 - Xcc-8004.355.1 0.18 -0.5 341,174 - Xcc-8004.355.1 0.18 -0.4 341,209 + Xcc-8004.355.1 0.20 +0.5 341,353 + Xcc-8004.355.1 0.27 -0.5 341,353 + Xcc-8004.355.1 0.27 +0.5 341,354 - Xcc-8004.355.1 0.27 -0.6 341,354 - Xcc-8004.355.1 0.27 -1.5 341,354 - Xcc-8004.355.1 0.27 +0.2 341,354 - Xcc-8004.355.1 0.27 -0.6 341,354 - Xcc-8004.355.1 0.27 +0.1 341,657 - Xcc-8004.355.1 0.41 -0.4 341,657 - Xcc-8004.355.1 0.41 +0.5 341,914 + Xcc-8004.355.1 0.53 -0.3 341,914 + Xcc-8004.355.1 0.53 -0.1 341,914 + Xcc-8004.355.1 0.53 +0.1 341,915 - Xcc-8004.355.1 0.53 -1.3 341,915 - Xcc-8004.355.1 0.53 +0.4 342,252 + Xcc-8004.355.1 0.69 +0.1 342,252 + Xcc-8004.355.1 0.69 -0.2 342,252 + Xcc-8004.355.1 0.69 -0.2 342,253 - Xcc-8004.355.1 0.69 +0.1 342,253 - Xcc-8004.355.1 0.69 -0.5 342,253 - Xcc-8004.355.1 0.69 -1.1 342,253 - Xcc-8004.355.1 0.69 -1.1 342,444 + Xcc-8004.355.1 0.78 -0.5 342,468 - Xcc-8004.355.1 0.79 -0.7 343,140 + Xcc-8004.356.1 0.88 +1.3 343,140 + Xcc-8004.356.1 0.88 +0.8 343,141 - Xcc-8004.356.1 0.89 -0.6 343,141 - Xcc-8004.356.1 0.89 +0.6 343,141 - Xcc-8004.356.1 0.89 +0.4 343,141 - Xcc-8004.356.1 0.89 -2.0 343,259 + Xcc-8004.357.1 0.10 -1.6 343,260 - Xcc-8004.357.1 0.10 -0.3 343,617 + Xcc-8004.357.1 0.86 -0.3 343,650 + +0.4 343,650 + +0.3 343,651 - +0.7 343,651 - -0.5 343,667 + -0.3 343,667 + -1.4 343,667 + +0.0 343,668 - -0.8 343,668 - +0.2 343,668 - -0.9 343,668 - -1.5 343,668 - -1.0 343,668 - +0.8 343,728 + -0.8 343,729 - +0.0 343,814 + +0.4 343,823 + +0.1 343,823 + +0.2 343,824 - -1.1 343,824 - -0.7 343,856 + Xcc-8004.358.1 0.17 -0.1 343,873 + Xcc-8004.358.1 0.22 -0.4 343,874 - Xcc-8004.358.1 0.22 +0.1 343,874 - Xcc-8004.358.1 0.22 -0.0
Or see this region's nucleotide sequence