Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3537.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3536.1 and Xcc-8004.3537.1 are separated by 203 nucleotidesXcc-8004.3537.1 and Xcc-8004.3538.1 are separated by 24 nucleotides Xcc-8004.3536.1: Xcc-8004.3536.1 - FIG01210913: hypothetical protein, at 3,426,325 to 3,427,485 Xcc-8004.3536.1 Xcc-8004.3537.1: Xcc-8004.3537.1 - Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4), at 3,427,689 to 3,429,383 Xcc-8004.3537.1 Xcc-8004.3538.1: Xcc-8004.3538.1 - FIG01211508: hypothetical protein, at 3,429,408 to 3,430,625 Xcc-8004.3538.1 Position (kb) 3427 3428 3429 3430Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3426.767 kb on - strand, within Xcc-8004.3536.1at 3426.869 kb on - strand, within Xcc-8004.3536.1at 3427.066 kb on - strand, within Xcc-8004.3536.1at 3427.066 kb on - strand, within Xcc-8004.3536.1at 3427.069 kb on + strand, within Xcc-8004.3536.1at 3427.070 kb on - strand, within Xcc-8004.3536.1at 3427.070 kb on - strand, within Xcc-8004.3536.1at 3427.070 kb on - strand, within Xcc-8004.3536.1at 3427.168 kb on + strand, within Xcc-8004.3536.1at 3427.169 kb on - strand, within Xcc-8004.3536.1at 3427.169 kb on - strand, within Xcc-8004.3536.1at 3427.169 kb on - strand, within Xcc-8004.3536.1at 3427.345 kb on - strand, within Xcc-8004.3536.1at 3427.349 kb on - strand, within Xcc-8004.3536.1at 3427.465 kb on + strandat 3427.551 kb on - strandat 3427.552 kb on + strandat 3427.556 kb on + strandat 3427.557 kb on - strandat 3427.586 kb on + strandat 3427.586 kb on + strandat 3427.604 kb on + strandat 3427.604 kb on + strandat 3427.672 kb on + strandat 3427.672 kb on + strandat 3427.672 kb on + strandat 3427.673 kb on - strandat 3427.673 kb on - strandat 3427.867 kb on + strand, within Xcc-8004.3537.1at 3427.874 kb on - strand, within Xcc-8004.3537.1at 3428.224 kb on + strand, within Xcc-8004.3537.1at 3428.224 kb on + strand, within Xcc-8004.3537.1at 3428.224 kb on + strand, within Xcc-8004.3537.1at 3428.225 kb on - strand, within Xcc-8004.3537.1at 3428.225 kb on - strand, within Xcc-8004.3537.1at 3428.296 kb on + strand, within Xcc-8004.3537.1at 3428.296 kb on + strand, within Xcc-8004.3537.1at 3428.302 kb on + strand, within Xcc-8004.3537.1at 3428.626 kb on + strand, within Xcc-8004.3537.1at 3428.800 kb on + strand, within Xcc-8004.3537.1at 3428.801 kb on - strand, within Xcc-8004.3537.1at 3428.801 kb on - strand, within Xcc-8004.3537.1at 3428.935 kb on + strand, within Xcc-8004.3537.1at 3428.936 kb on - strand, within Xcc-8004.3537.1at 3429.034 kb on + strand, within Xcc-8004.3537.1at 3429.058 kb on + strand, within Xcc-8004.3537.1at 3429.140 kb on + strand, within Xcc-8004.3537.1at 3429.142 kb on + strand, within Xcc-8004.3537.1at 3429.142 kb on + strand, within Xcc-8004.3537.1at 3429.142 kb on + strand, within Xcc-8004.3537.1at 3429.143 kb on - strand, within Xcc-8004.3537.1at 3429.262 kb on + strandat 3429.263 kb on - strandat 3429.263 kb on - strandat 3429.366 kb on - strandat 3429.450 kb on - strandat 3429.507 kb on - strandat 3429.885 kb on - strand, within Xcc-8004.3538.1at 3429.954 kb on + strand, within Xcc-8004.3538.1at 3430.044 kb on - strand, within Xcc-8004.3538.1at 3430.062 kb on + strand, within Xcc-8004.3538.1at 3430.062 kb on + strand, within Xcc-8004.3538.1at 3430.062 kb on + strand, within Xcc-8004.3538.1at 3430.062 kb on + strand, within Xcc-8004.3538.1at 3430.063 kb on - strand, within Xcc-8004.3538.1at 3430.063 kb on - strand, within Xcc-8004.3538.1at 3430.116 kb on + strand, within Xcc-8004.3538.1at 3430.147 kb on - strand, within Xcc-8004.3538.1at 3430.147 kb on - strand, within Xcc-8004.3538.1at 3430.147 kb on - strand, within Xcc-8004.3538.1at 3430.230 kb on + strand, within Xcc-8004.3538.1at 3430.230 kb on + strand, within Xcc-8004.3538.1at 3430.372 kb on - strand, within Xcc-8004.3538.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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3,426,767 - Xcc-8004.3536.1 0.38 -0.3
3,426,869 - Xcc-8004.3536.1 0.47 -1.0
3,427,066 - Xcc-8004.3536.1 0.64 -0.8
3,427,066 - Xcc-8004.3536.1 0.64 -1.2
3,427,069 + Xcc-8004.3536.1 0.64 -1.8
3,427,070 - Xcc-8004.3536.1 0.64 -0.4
3,427,070 - Xcc-8004.3536.1 0.64 +0.7
3,427,070 - Xcc-8004.3536.1 0.64 -1.8
3,427,168 + Xcc-8004.3536.1 0.73 +0.3
3,427,169 - Xcc-8004.3536.1 0.73 -0.6
3,427,169 - Xcc-8004.3536.1 0.73 -0.1
3,427,169 - Xcc-8004.3536.1 0.73 +0.7
3,427,345 - Xcc-8004.3536.1 0.88 +0.3
3,427,349 - Xcc-8004.3536.1 0.88 +0.5
3,427,465 + -1.9
3,427,551 - +1.4
3,427,552 + +0.3
3,427,556 + +0.6
3,427,557 - +0.5
3,427,586 + +0.4
3,427,586 + -0.3
3,427,604 + -0.3
3,427,604 + -0.1
3,427,672 + -0.1
3,427,672 + +0.1
3,427,672 + +0.1
3,427,673 - +0.7
3,427,673 - -1.2
3,427,867 + Xcc-8004.3537.1 0.11 -2.2
3,427,874 - Xcc-8004.3537.1 0.11 -1.8
3,428,224 + Xcc-8004.3537.1 0.32 +1.3
3,428,224 + Xcc-8004.3537.1 0.32 -3.0
3,428,224 + Xcc-8004.3537.1 0.32 -2.3
3,428,225 - Xcc-8004.3537.1 0.32 -2.1
3,428,225 - Xcc-8004.3537.1 0.32 -0.4
3,428,296 + Xcc-8004.3537.1 0.36 -2.3
3,428,296 + Xcc-8004.3537.1 0.36 -2.1
3,428,302 + Xcc-8004.3537.1 0.36 -1.0
3,428,626 + Xcc-8004.3537.1 0.55 -2.3
3,428,800 + Xcc-8004.3537.1 0.66 -2.4
3,428,801 - Xcc-8004.3537.1 0.66 -0.5
3,428,801 - Xcc-8004.3537.1 0.66 -2.2
3,428,935 + Xcc-8004.3537.1 0.74 +0.5
3,428,936 - Xcc-8004.3537.1 0.74 -1.8
3,429,034 + Xcc-8004.3537.1 0.79 -4.6
3,429,058 + Xcc-8004.3537.1 0.81 -0.6
3,429,140 + Xcc-8004.3537.1 0.86 -1.6
3,429,142 + Xcc-8004.3537.1 0.86 -3.8
3,429,142 + Xcc-8004.3537.1 0.86 -2.1
3,429,142 + Xcc-8004.3537.1 0.86 -0.9
3,429,143 - Xcc-8004.3537.1 0.86 -0.1
3,429,262 + -0.6
3,429,263 - -1.5
3,429,263 - -2.1
3,429,366 - -1.4
3,429,450 - -1.7
3,429,507 - -0.3
3,429,885 - Xcc-8004.3538.1 0.39 +0.7
3,429,954 + Xcc-8004.3538.1 0.45 -0.4
3,430,044 - Xcc-8004.3538.1 0.52 -0.2
3,430,062 + Xcc-8004.3538.1 0.54 -0.5
3,430,062 + Xcc-8004.3538.1 0.54 +0.1
3,430,062 + Xcc-8004.3538.1 0.54 +0.0
3,430,062 + Xcc-8004.3538.1 0.54 -1.5
3,430,063 - Xcc-8004.3538.1 0.54 -0.4
3,430,063 - Xcc-8004.3538.1 0.54 +0.4
3,430,116 + Xcc-8004.3538.1 0.58 +0.1
3,430,147 - Xcc-8004.3538.1 0.61 -1.5
3,430,147 - Xcc-8004.3538.1 0.61 +0.8
3,430,147 - Xcc-8004.3538.1 0.61 -0.3
3,430,230 + Xcc-8004.3538.1 0.67 -0.4
3,430,230 + Xcc-8004.3538.1 0.67 +0.1
3,430,372 - Xcc-8004.3538.1 0.79 -0.1

Or see this region's nucleotide sequence