Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3507.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3506.1 and Xcc-8004.3507.1 are separated by 157 nucleotidesXcc-8004.3507.1 and Xcc-8004.3508.1 are separated by 223 nucleotides Xcc-8004.3506.1: Xcc-8004.3506.1 - Fumarate hydratase class I, aerobic (EC 4.2.1.2), at 3,391,656 to 3,393,200 Xcc-8004.3506.1 Xcc-8004.3507.1: Xcc-8004.3507.1 - Lipid A export ATP-binding/permease protein MsbA, at 3,393,358 to 3,395,283 Xcc-8004.3507.1 Xcc-8004.3508.1: Xcc-8004.3508.1 - Ferredoxin--NADP(+) reductase (EC 1.18.1.2), at 3,395,507 to 3,396,286 Xcc-8004.3508.1 Position (kb) 3393 3394 3395 3396Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3393.184 kb on - strandat 3393.212 kb on + strandat 3393.399 kb on + strandat 3393.399 kb on + strandat 3393.399 kb on + strandat 3393.399 kb on + strandat 3393.399 kb on + strandat 3393.399 kb on + strandat 3393.399 kb on + strandat 3393.399 kb on + strandat 3393.399 kb on + strandat 3393.399 kb on + strandat 3393.399 kb on + strandat 3393.399 kb on + strandat 3393.399 kb on + strandat 3393.399 kb on + strandat 3393.400 kb on - strandat 3393.400 kb on - strandat 3393.400 kb on - strandat 3393.400 kb on - strandat 3393.400 kb on - strandat 3393.400 kb on - strandat 3393.400 kb on - strandat 3393.400 kb on - strandat 3393.400 kb on - strandat 3393.510 kb on + strandat 3393.511 kb on - strandat 3393.592 kb on + strand, within Xcc-8004.3507.1at 3393.592 kb on + strand, within Xcc-8004.3507.1at 3393.592 kb on + strand, within Xcc-8004.3507.1at 3393.592 kb on + strand, within Xcc-8004.3507.1at 3393.592 kb on + strand, within Xcc-8004.3507.1at 3393.593 kb on - strand, within Xcc-8004.3507.1at 3393.593 kb on - strand, within Xcc-8004.3507.1at 3393.593 kb on - strand, within Xcc-8004.3507.1at 3393.593 kb on - strand, within Xcc-8004.3507.1at 3393.593 kb on - strand, within Xcc-8004.3507.1at 3393.593 kb on - strand, within Xcc-8004.3507.1at 3393.593 kb on - strand, within Xcc-8004.3507.1at 3393.593 kb on - strand, within Xcc-8004.3507.1at 3393.764 kb on - strand, within Xcc-8004.3507.1at 3393.988 kb on + strand, within Xcc-8004.3507.1at 3393.988 kb on + strand, within Xcc-8004.3507.1at 3393.988 kb on + strand, within Xcc-8004.3507.1at 3393.988 kb on + strand, within Xcc-8004.3507.1at 3393.988 kb on + strand, within Xcc-8004.3507.1at 3393.988 kb on + strand, within Xcc-8004.3507.1at 3393.988 kb on + strand, within Xcc-8004.3507.1at 3393.988 kb on + strand, within Xcc-8004.3507.1at 3393.988 kb on + strand, within Xcc-8004.3507.1at 3393.988 kb on + strand, within Xcc-8004.3507.1at 3393.989 kb on - strand, within Xcc-8004.3507.1at 3393.989 kb on - strand, within Xcc-8004.3507.1at 3393.989 kb on - strand, within Xcc-8004.3507.1at 3393.989 kb on - strand, within Xcc-8004.3507.1at 3393.989 kb on - strand, within Xcc-8004.3507.1at 3393.989 kb on - strand, within Xcc-8004.3507.1at 3394.069 kb on + strand, within Xcc-8004.3507.1at 3394.114 kb on + strand, within Xcc-8004.3507.1at 3394.114 kb on + strand, within Xcc-8004.3507.1at 3394.114 kb on + strand, within Xcc-8004.3507.1at 3394.295 kb on - strand, within Xcc-8004.3507.1at 3394.297 kb on + strand, within Xcc-8004.3507.1at 3394.298 kb on - strand, within Xcc-8004.3507.1at 3394.298 kb on - strand, within Xcc-8004.3507.1at 3394.312 kb on + strand, within Xcc-8004.3507.1at 3394.312 kb on + strand, within Xcc-8004.3507.1at 3394.312 kb on + strand, within Xcc-8004.3507.1at 3394.312 kb on + strand, within Xcc-8004.3507.1at 3394.312 kb on + strand, within Xcc-8004.3507.1at 3394.312 kb on + strand, within Xcc-8004.3507.1at 3394.312 kb on + strand, within Xcc-8004.3507.1at 3394.312 kb on + strand, within Xcc-8004.3507.1at 3394.312 kb on + strand, within Xcc-8004.3507.1at 3394.312 kb on + strand, within Xcc-8004.3507.1at 3394.312 kb on + strand, within Xcc-8004.3507.1at 3394.313 kb on - strand, within Xcc-8004.3507.1at 3394.313 kb on - strand, within Xcc-8004.3507.1at 3394.313 kb on - strand, within Xcc-8004.3507.1at 3394.397 kb on + strand, within Xcc-8004.3507.1at 3394.398 kb on - strand, within Xcc-8004.3507.1at 3394.398 kb on - strand, within Xcc-8004.3507.1at 3394.398 kb on - strand, within Xcc-8004.3507.1at 3394.447 kb on + strand, within Xcc-8004.3507.1at 3394.447 kb on + strand, within Xcc-8004.3507.1at 3394.447 kb on + strand, within Xcc-8004.3507.1at 3394.447 kb on + strand, within Xcc-8004.3507.1at 3394.448 kb on - strand, within Xcc-8004.3507.1at 3394.448 kb on - strand, within Xcc-8004.3507.1at 3394.448 kb on - strand, within Xcc-8004.3507.1at 3394.448 kb on - strand, within Xcc-8004.3507.1at 3394.463 kb on - strand, within Xcc-8004.3507.1at 3394.693 kb on + strand, within Xcc-8004.3507.1at 3394.693 kb on + strand, within Xcc-8004.3507.1at 3394.693 kb on + strand, within Xcc-8004.3507.1at 3394.693 kb on + strand, within Xcc-8004.3507.1at 3394.694 kb on - strand, within Xcc-8004.3507.1at 3394.694 kb on - strand, within Xcc-8004.3507.1at 3394.745 kb on - strand, within Xcc-8004.3507.1at 3394.801 kb on + strand, within Xcc-8004.3507.1at 3394.927 kb on + strand, within Xcc-8004.3507.1at 3394.928 kb on - strand, within Xcc-8004.3507.1at 3394.928 kb on - strand, within Xcc-8004.3507.1at 3395.011 kb on + strand, within Xcc-8004.3507.1at 3395.011 kb on + strand, within Xcc-8004.3507.1at 3395.011 kb on + strand, within Xcc-8004.3507.1at 3395.011 kb on + strand, within Xcc-8004.3507.1at 3395.011 kb on + strand, within Xcc-8004.3507.1at 3395.011 kb on + strand, within Xcc-8004.3507.1at 3395.011 kb on + strand, within Xcc-8004.3507.1at 3395.011 kb on + strand, within Xcc-8004.3507.1at 3395.011 kb on + strand, within Xcc-8004.3507.1at 3395.012 kb on - strand, within Xcc-8004.3507.1at 3395.012 kb on - strand, within Xcc-8004.3507.1at 3395.012 kb on - strand, within Xcc-8004.3507.1at 3395.177 kb on + strandat 3395.178 kb on - strandat 3395.178 kb on - strandat 3395.321 kb on - strandat 3395.321 kb on - strandat 3395.468 kb on + strandat 3395.469 kb on - strandat 3395.499 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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3,393,184 - -1.3
3,393,212 + -0.6
3,393,399 + -0.3
3,393,399 + -0.1
3,393,399 + +0.9
3,393,399 + +0.2
3,393,399 + +0.5
3,393,399 + -2.1
3,393,399 + -1.0
3,393,399 + +0.2
3,393,399 + +0.2
3,393,399 + -1.5
3,393,399 + +1.1
3,393,399 + -0.0
3,393,399 + +0.0
3,393,399 + +2.1
3,393,400 - -0.2
3,393,400 - -0.1
3,393,400 - +0.7
3,393,400 - -0.6
3,393,400 - +0.1
3,393,400 - -0.7
3,393,400 - +0.3
3,393,400 - -0.3
3,393,400 - -0.2
3,393,510 + -1.2
3,393,511 - -1.3
3,393,592 + Xcc-8004.3507.1 0.12 -0.1
3,393,592 + Xcc-8004.3507.1 0.12 -0.3
3,393,592 + Xcc-8004.3507.1 0.12 -0.0
3,393,592 + Xcc-8004.3507.1 0.12 -1.3
3,393,592 + Xcc-8004.3507.1 0.12 -0.4
3,393,593 - Xcc-8004.3507.1 0.12 -1.1
3,393,593 - Xcc-8004.3507.1 0.12 +0.7
3,393,593 - Xcc-8004.3507.1 0.12 -1.3
3,393,593 - Xcc-8004.3507.1 0.12 +0.2
3,393,593 - Xcc-8004.3507.1 0.12 +0.4
3,393,593 - Xcc-8004.3507.1 0.12 -1.6
3,393,593 - Xcc-8004.3507.1 0.12 -0.9
3,393,593 - Xcc-8004.3507.1 0.12 -0.6
3,393,764 - Xcc-8004.3507.1 0.21 -2.4
3,393,988 + Xcc-8004.3507.1 0.33 -1.5
3,393,988 + Xcc-8004.3507.1 0.33 -1.3
3,393,988 + Xcc-8004.3507.1 0.33 -0.5
3,393,988 + Xcc-8004.3507.1 0.33 -0.6
3,393,988 + Xcc-8004.3507.1 0.33 -2.0
3,393,988 + Xcc-8004.3507.1 0.33 -1.5
3,393,988 + Xcc-8004.3507.1 0.33 -1.9
3,393,988 + Xcc-8004.3507.1 0.33 -0.8
3,393,988 + Xcc-8004.3507.1 0.33 -2.0
3,393,988 + Xcc-8004.3507.1 0.33 +0.9
3,393,989 - Xcc-8004.3507.1 0.33 -0.5
3,393,989 - Xcc-8004.3507.1 0.33 -1.4
3,393,989 - Xcc-8004.3507.1 0.33 -1.1
3,393,989 - Xcc-8004.3507.1 0.33 -0.6
3,393,989 - Xcc-8004.3507.1 0.33 -1.1
3,393,989 - Xcc-8004.3507.1 0.33 -1.0
3,394,069 + Xcc-8004.3507.1 0.37 -2.8
3,394,114 + Xcc-8004.3507.1 0.39 -1.3
3,394,114 + Xcc-8004.3507.1 0.39 -1.0
3,394,114 + Xcc-8004.3507.1 0.39 -1.4
3,394,295 - Xcc-8004.3507.1 0.49 -1.6
3,394,297 + Xcc-8004.3507.1 0.49 -0.8
3,394,298 - Xcc-8004.3507.1 0.49 -2.4
3,394,298 - Xcc-8004.3507.1 0.49 -0.5
3,394,312 + Xcc-8004.3507.1 0.50 -0.3
3,394,312 + Xcc-8004.3507.1 0.50 -2.2
3,394,312 + Xcc-8004.3507.1 0.50 -2.2
3,394,312 + Xcc-8004.3507.1 0.50 -1.0
3,394,312 + Xcc-8004.3507.1 0.50 +1.2
3,394,312 + Xcc-8004.3507.1 0.50 -0.3
3,394,312 + Xcc-8004.3507.1 0.50 -1.4
3,394,312 + Xcc-8004.3507.1 0.50 +0.2
3,394,312 + Xcc-8004.3507.1 0.50 +0.6
3,394,312 + Xcc-8004.3507.1 0.50 -0.7
3,394,312 + Xcc-8004.3507.1 0.50 +1.7
3,394,313 - Xcc-8004.3507.1 0.50 -1.7
3,394,313 - Xcc-8004.3507.1 0.50 -1.1
3,394,313 - Xcc-8004.3507.1 0.50 -0.3
3,394,397 + Xcc-8004.3507.1 0.54 -1.4
3,394,398 - Xcc-8004.3507.1 0.54 -2.3
3,394,398 - Xcc-8004.3507.1 0.54 -0.3
3,394,398 - Xcc-8004.3507.1 0.54 -2.2
3,394,447 + Xcc-8004.3507.1 0.57 -0.7
3,394,447 + Xcc-8004.3507.1 0.57 -1.0
3,394,447 + Xcc-8004.3507.1 0.57 -1.1
3,394,447 + Xcc-8004.3507.1 0.57 +0.4
3,394,448 - Xcc-8004.3507.1 0.57 -1.0
3,394,448 - Xcc-8004.3507.1 0.57 +0.2
3,394,448 - Xcc-8004.3507.1 0.57 +0.4
3,394,448 - Xcc-8004.3507.1 0.57 -0.8
3,394,463 - Xcc-8004.3507.1 0.57 -1.8
3,394,693 + Xcc-8004.3507.1 0.69 -1.2
3,394,693 + Xcc-8004.3507.1 0.69 -0.8
3,394,693 + Xcc-8004.3507.1 0.69 +0.0
3,394,693 + Xcc-8004.3507.1 0.69 -1.9
3,394,694 - Xcc-8004.3507.1 0.69 -0.3
3,394,694 - Xcc-8004.3507.1 0.69 -0.8
3,394,745 - Xcc-8004.3507.1 0.72 -0.4
3,394,801 + Xcc-8004.3507.1 0.75 -1.0
3,394,927 + Xcc-8004.3507.1 0.81 -2.5
3,394,928 - Xcc-8004.3507.1 0.82 -0.8
3,394,928 - Xcc-8004.3507.1 0.82 -2.0
3,395,011 + Xcc-8004.3507.1 0.86 -0.2
3,395,011 + Xcc-8004.3507.1 0.86 -1.4
3,395,011 + Xcc-8004.3507.1 0.86 -0.4
3,395,011 + Xcc-8004.3507.1 0.86 -1.0
3,395,011 + Xcc-8004.3507.1 0.86 +0.5
3,395,011 + Xcc-8004.3507.1 0.86 -1.3
3,395,011 + Xcc-8004.3507.1 0.86 -1.1
3,395,011 + Xcc-8004.3507.1 0.86 -2.1
3,395,011 + Xcc-8004.3507.1 0.86 -0.7
3,395,012 - Xcc-8004.3507.1 0.86 -1.3
3,395,012 - Xcc-8004.3507.1 0.86 -2.1
3,395,012 - Xcc-8004.3507.1 0.86 -1.4
3,395,177 + -1.3
3,395,178 - -1.6
3,395,178 - -1.4
3,395,321 - +0.5
3,395,321 - -0.4
3,395,468 + -0.1
3,395,469 - +1.1
3,395,499 + -0.3

Or see this region's nucleotide sequence