Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3379.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3378.1 and Xcc-8004.3379.1 are separated by 123 nucleotidesXcc-8004.3379.1 and Xcc-8004.3380.1 overlap by 4 nucleotides Xcc-8004.3378.1: Xcc-8004.3378.1 - hypothetical protein, at 3,270,901 to 3,272,049 Xcc-8004.3378.1 Xcc-8004.3379.1: Xcc-8004.3379.1 - Transcriptional regulator, ArsR family / Methyltransferase fusion, at 3,272,173 to 3,273,168 Xcc-8004.3379.1 Xcc-8004.3380.1: Xcc-8004.3380.1 - 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), at 3,273,165 to 3,274,304 Xcc-8004.3380.1 Position (kb) 3272 3273 3274Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3271.257 kb on - strand, within Xcc-8004.3378.1at 3271.257 kb on - strand, within Xcc-8004.3378.1at 3271.274 kb on + strand, within Xcc-8004.3378.1at 3271.274 kb on + strand, within Xcc-8004.3378.1at 3271.274 kb on + strand, within Xcc-8004.3378.1at 3271.275 kb on - strand, within Xcc-8004.3378.1at 3271.393 kb on + strand, within Xcc-8004.3378.1at 3271.397 kb on + strand, within Xcc-8004.3378.1at 3271.397 kb on + strand, within Xcc-8004.3378.1at 3271.485 kb on + strand, within Xcc-8004.3378.1at 3271.486 kb on - strand, within Xcc-8004.3378.1at 3271.503 kb on + strand, within Xcc-8004.3378.1at 3271.553 kb on + strand, within Xcc-8004.3378.1at 3271.553 kb on + strand, within Xcc-8004.3378.1at 3271.553 kb on + strand, within Xcc-8004.3378.1at 3271.553 kb on + strand, within Xcc-8004.3378.1at 3271.553 kb on + strand, within Xcc-8004.3378.1at 3271.553 kb on + strand, within Xcc-8004.3378.1at 3271.553 kb on + strand, within Xcc-8004.3378.1at 3271.553 kb on + strand, within Xcc-8004.3378.1at 3271.553 kb on + strand, within Xcc-8004.3378.1at 3271.554 kb on - strand, within Xcc-8004.3378.1at 3271.554 kb on - strand, within Xcc-8004.3378.1at 3271.554 kb on - strand, within Xcc-8004.3378.1at 3271.554 kb on - strand, within Xcc-8004.3378.1at 3271.721 kb on + strand, within Xcc-8004.3378.1at 3271.721 kb on + strand, within Xcc-8004.3378.1at 3271.721 kb on + strand, within Xcc-8004.3378.1at 3271.721 kb on + strand, within Xcc-8004.3378.1at 3271.721 kb on + strand, within Xcc-8004.3378.1at 3271.721 kb on + strand, within Xcc-8004.3378.1at 3271.721 kb on + strand, within Xcc-8004.3378.1at 3271.722 kb on - strand, within Xcc-8004.3378.1at 3271.722 kb on - strand, within Xcc-8004.3378.1at 3271.722 kb on - strand, within Xcc-8004.3378.1at 3271.722 kb on - strand, within Xcc-8004.3378.1at 3271.844 kb on + strand, within Xcc-8004.3378.1at 3271.844 kb on + strand, within Xcc-8004.3378.1at 3271.845 kb on - strand, within Xcc-8004.3378.1at 3271.845 kb on - strand, within Xcc-8004.3378.1at 3271.845 kb on - strand, within Xcc-8004.3378.1at 3272.087 kb on + strandat 3272.087 kb on + strandat 3272.087 kb on + strandat 3272.088 kb on - strandat 3272.088 kb on - strandat 3272.109 kb on + strandat 3272.109 kb on + strandat 3272.110 kb on - strandat 3272.110 kb on - strandat 3272.113 kb on + strandat 3272.113 kb on + strandat 3272.114 kb on - strandat 3272.114 kb on - strandat 3272.162 kb on + strandat 3272.163 kb on - strandat 3272.168 kb on + strandat 3272.168 kb on + strandat 3272.168 kb on + strandat 3272.169 kb on - strandat 3272.378 kb on - strand, within Xcc-8004.3379.1at 3272.378 kb on - strand, within Xcc-8004.3379.1at 3272.378 kb on - strand, within Xcc-8004.3379.1at 3272.557 kb on + strand, within Xcc-8004.3379.1at 3272.557 kb on + strand, within Xcc-8004.3379.1at 3272.557 kb on + strand, within Xcc-8004.3379.1at 3272.557 kb on + strand, within Xcc-8004.3379.1at 3272.558 kb on - strand, within Xcc-8004.3379.1at 3272.558 kb on - strand, within Xcc-8004.3379.1at 3272.651 kb on + strand, within Xcc-8004.3379.1at 3272.686 kb on + strand, within Xcc-8004.3379.1at 3272.687 kb on - strand, within Xcc-8004.3379.1at 3272.687 kb on - strand, within Xcc-8004.3379.1at 3272.687 kb on - strand, within Xcc-8004.3379.1at 3272.839 kb on + strand, within Xcc-8004.3379.1at 3272.840 kb on - strand, within Xcc-8004.3379.1at 3272.840 kb on - strand, within Xcc-8004.3379.1at 3272.840 kb on - strand, within Xcc-8004.3379.1at 3272.883 kb on - strand, within Xcc-8004.3379.1at 3272.953 kb on + strand, within Xcc-8004.3379.1at 3272.953 kb on + strand, within Xcc-8004.3379.1at 3273.175 kb on + strandat 3273.175 kb on + strandat 3273.176 kb on - strandat 3273.176 kb on - strandat 3273.176 kb on - strandat 3273.176 kb on - strandat 3273.176 kb on - strandat 3273.176 kb on - strandat 3273.489 kb on + strand, within Xcc-8004.3380.1at 3273.524 kb on + strand, within Xcc-8004.3380.1at 3273.525 kb on - strand, within Xcc-8004.3380.1at 3273.525 kb on - strand, within Xcc-8004.3380.1at 3273.525 kb on - strand, within Xcc-8004.3380.1at 3273.558 kb on + strand, within Xcc-8004.3380.1at 3273.558 kb on + strand, within Xcc-8004.3380.1at 3273.559 kb on - strand, within Xcc-8004.3380.1at 3273.579 kb on + strand, within Xcc-8004.3380.1at 3273.766 kb on - strand, within Xcc-8004.3380.1at 3273.858 kb on + strand, within Xcc-8004.3380.1at 3273.858 kb on + strand, within Xcc-8004.3380.1at 3273.859 kb on - strand, within Xcc-8004.3380.1at 3273.859 kb on - strand, within Xcc-8004.3380.1at 3273.972 kb on + strand, within Xcc-8004.3380.1at 3274.080 kb on + strand, within Xcc-8004.3380.1at 3274.080 kb on + strand, within Xcc-8004.3380.1at 3274.080 kb on + strand, within Xcc-8004.3380.1at 3274.080 kb on + strand, within Xcc-8004.3380.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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3,271,257 - Xcc-8004.3378.1 0.31 -0.2
3,271,257 - Xcc-8004.3378.1 0.31 -0.1
3,271,274 + Xcc-8004.3378.1 0.32 -0.3
3,271,274 + Xcc-8004.3378.1 0.32 -0.8
3,271,274 + Xcc-8004.3378.1 0.32 -0.7
3,271,275 - Xcc-8004.3378.1 0.33 -0.1
3,271,393 + Xcc-8004.3378.1 0.43 +2.3
3,271,397 + Xcc-8004.3378.1 0.43 -0.0
3,271,397 + Xcc-8004.3378.1 0.43 -0.1
3,271,485 + Xcc-8004.3378.1 0.51 +0.0
3,271,486 - Xcc-8004.3378.1 0.51 +0.5
3,271,503 + Xcc-8004.3378.1 0.52 -0.6
3,271,553 + Xcc-8004.3378.1 0.57 -0.9
3,271,553 + Xcc-8004.3378.1 0.57 +0.6
3,271,553 + Xcc-8004.3378.1 0.57 -0.5
3,271,553 + Xcc-8004.3378.1 0.57 +0.7
3,271,553 + Xcc-8004.3378.1 0.57 +0.1
3,271,553 + Xcc-8004.3378.1 0.57 -0.8
3,271,553 + Xcc-8004.3378.1 0.57 -0.6
3,271,553 + Xcc-8004.3378.1 0.57 -0.1
3,271,553 + Xcc-8004.3378.1 0.57 -1.6
3,271,554 - Xcc-8004.3378.1 0.57 -1.3
3,271,554 - Xcc-8004.3378.1 0.57 -0.3
3,271,554 - Xcc-8004.3378.1 0.57 +1.1
3,271,554 - Xcc-8004.3378.1 0.57 -1.4
3,271,721 + Xcc-8004.3378.1 0.71 -0.2
3,271,721 + Xcc-8004.3378.1 0.71 +1.3
3,271,721 + Xcc-8004.3378.1 0.71 -1.8
3,271,721 + Xcc-8004.3378.1 0.71 +0.4
3,271,721 + Xcc-8004.3378.1 0.71 +0.4
3,271,721 + Xcc-8004.3378.1 0.71 -0.7
3,271,721 + Xcc-8004.3378.1 0.71 -1.2
3,271,722 - Xcc-8004.3378.1 0.71 +0.3
3,271,722 - Xcc-8004.3378.1 0.71 +0.6
3,271,722 - Xcc-8004.3378.1 0.71 -0.8
3,271,722 - Xcc-8004.3378.1 0.71 -0.3
3,271,844 + Xcc-8004.3378.1 0.82 -0.4
3,271,844 + Xcc-8004.3378.1 0.82 +0.8
3,271,845 - Xcc-8004.3378.1 0.82 +0.4
3,271,845 - Xcc-8004.3378.1 0.82 +1.3
3,271,845 - Xcc-8004.3378.1 0.82 +0.6
3,272,087 + +0.8
3,272,087 + +1.1
3,272,087 + -0.9
3,272,088 - +0.4
3,272,088 - +1.0
3,272,109 + +0.2
3,272,109 + +0.4
3,272,110 - -0.7
3,272,110 - -0.4
3,272,113 + -0.9
3,272,113 + -0.8
3,272,114 - -0.5
3,272,114 - -0.2
3,272,162 + -0.6
3,272,163 - -1.6
3,272,168 + -0.6
3,272,168 + -1.0
3,272,168 + +0.7
3,272,169 - -1.2
3,272,378 - Xcc-8004.3379.1 0.21 -2.1
3,272,378 - Xcc-8004.3379.1 0.21 -1.3
3,272,378 - Xcc-8004.3379.1 0.21 +0.5
3,272,557 + Xcc-8004.3379.1 0.39 -2.1
3,272,557 + Xcc-8004.3379.1 0.39 +0.0
3,272,557 + Xcc-8004.3379.1 0.39 +0.7
3,272,557 + Xcc-8004.3379.1 0.39 -1.3
3,272,558 - Xcc-8004.3379.1 0.39 -3.5
3,272,558 - Xcc-8004.3379.1 0.39 -0.0
3,272,651 + Xcc-8004.3379.1 0.48 -0.9
3,272,686 + Xcc-8004.3379.1 0.52 +0.7
3,272,687 - Xcc-8004.3379.1 0.52 -0.5
3,272,687 - Xcc-8004.3379.1 0.52 -1.7
3,272,687 - Xcc-8004.3379.1 0.52 -0.4
3,272,839 + Xcc-8004.3379.1 0.67 -1.4
3,272,840 - Xcc-8004.3379.1 0.67 -1.7
3,272,840 - Xcc-8004.3379.1 0.67 -0.8
3,272,840 - Xcc-8004.3379.1 0.67 -0.6
3,272,883 - Xcc-8004.3379.1 0.71 -1.7
3,272,953 + Xcc-8004.3379.1 0.78 -1.5
3,272,953 + Xcc-8004.3379.1 0.78 -1.0
3,273,175 + -1.2
3,273,175 + +0.6
3,273,176 - -0.3
3,273,176 - -0.4
3,273,176 - +0.8
3,273,176 - -0.5
3,273,176 - +0.1
3,273,176 - -1.1
3,273,489 + Xcc-8004.3380.1 0.28 +0.2
3,273,524 + Xcc-8004.3380.1 0.31 -0.6
3,273,525 - Xcc-8004.3380.1 0.32 +1.1
3,273,525 - Xcc-8004.3380.1 0.32 -0.1
3,273,525 - Xcc-8004.3380.1 0.32 +0.9
3,273,558 + Xcc-8004.3380.1 0.34 -1.5
3,273,558 + Xcc-8004.3380.1 0.34 +1.2
3,273,559 - Xcc-8004.3380.1 0.35 +0.6
3,273,579 + Xcc-8004.3380.1 0.36 +0.7
3,273,766 - Xcc-8004.3380.1 0.53 +1.2
3,273,858 + Xcc-8004.3380.1 0.61 +0.0
3,273,858 + Xcc-8004.3380.1 0.61 -0.1
3,273,859 - Xcc-8004.3380.1 0.61 -0.2
3,273,859 - Xcc-8004.3380.1 0.61 -0.9
3,273,972 + Xcc-8004.3380.1 0.71 +0.2
3,274,080 + Xcc-8004.3380.1 0.80 -0.1
3,274,080 + Xcc-8004.3380.1 0.80 -0.6
3,274,080 + Xcc-8004.3380.1 0.80 +0.7
3,274,080 + Xcc-8004.3380.1 0.80 -0.4

Or see this region's nucleotide sequence