Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.337.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.335.1 and Xcc-8004.336.1 are separated by 66 nucleotidesXcc-8004.336.1 and Xcc-8004.337.1 are separated by 79 nucleotidesXcc-8004.337.1 and Xcc-8004.338.1 overlap by 4 nucleotidesXcc-8004.338.1 and Xcc-8004.339.1 are separated by 284 nucleotides Xcc-8004.335.1: Xcc-8004.335.1 - putative membrane protein, at 324,279 to 325,154 Xcc-8004.335.1 Xcc-8004.336.1: Xcc-8004.336.1 - Alpha/beta hydrolase, at 325,221 to 325,883 Xcc-8004.336.1 Xcc-8004.337.1: Xcc-8004.337.1 - ATPase, AFG1 family, at 325,963 to 327,057 Xcc-8004.337.1 Xcc-8004.338.1: Xcc-8004.338.1 - FIG01213664: hypothetical protein, at 327,054 to 327,734 Xcc-8004.338.1 Xcc-8004.339.1: Xcc-8004.339.1 - Organic hydroperoxide resistance transcriptional regulator, at 328,019 to 328,480 Xcc-8004.339.1 Position (kb) 325 326 327 328Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 325.048 kb on + strand, within Xcc-8004.335.1at 325.048 kb on + strand, within Xcc-8004.335.1at 325.048 kb on + strand, within Xcc-8004.335.1at 325.048 kb on + strand, within Xcc-8004.335.1at 325.048 kb on + strand, within Xcc-8004.335.1at 325.048 kb on + strand, within Xcc-8004.335.1at 325.049 kb on - strand, within Xcc-8004.335.1at 325.049 kb on - strand, within Xcc-8004.335.1at 325.049 kb on - strand, within Xcc-8004.335.1at 325.212 kb on + strandat 325.212 kb on + strandat 325.212 kb on + strandat 325.212 kb on + strandat 325.212 kb on + strandat 325.213 kb on - strandat 325.213 kb on - strandat 325.213 kb on - strandat 325.220 kb on + strandat 325.220 kb on + strandat 325.220 kb on + strandat 325.220 kb on + strandat 325.220 kb on + strandat 325.220 kb on + strandat 325.220 kb on + strandat 325.221 kb on - strandat 325.221 kb on - strandat 325.221 kb on - strandat 325.221 kb on - strandat 325.221 kb on - strandat 325.221 kb on - strandat 325.234 kb on + strandat 325.234 kb on + strandat 325.435 kb on + strand, within Xcc-8004.336.1at 325.435 kb on + strand, within Xcc-8004.336.1at 325.436 kb on - strand, within Xcc-8004.336.1at 325.436 kb on - strand, within Xcc-8004.336.1at 325.587 kb on + strand, within Xcc-8004.336.1at 325.587 kb on + strand, within Xcc-8004.336.1at 325.587 kb on + strand, within Xcc-8004.336.1at 325.587 kb on + strand, within Xcc-8004.336.1at 325.587 kb on + strand, within Xcc-8004.336.1at 325.587 kb on + strand, within Xcc-8004.336.1at 325.587 kb on + strand, within Xcc-8004.336.1at 325.587 kb on + strand, within Xcc-8004.336.1at 325.587 kb on + strand, within Xcc-8004.336.1at 325.588 kb on - strand, within Xcc-8004.336.1at 325.588 kb on - strand, within Xcc-8004.336.1at 325.588 kb on - strand, within Xcc-8004.336.1at 325.588 kb on - strand, within Xcc-8004.336.1at 325.588 kb on - strand, within Xcc-8004.336.1at 325.743 kb on + strand, within Xcc-8004.336.1at 325.743 kb on + strand, within Xcc-8004.336.1at 325.743 kb on + strand, within Xcc-8004.336.1at 325.744 kb on - strand, within Xcc-8004.336.1at 325.744 kb on - strand, within Xcc-8004.336.1at 325.744 kb on - strand, within Xcc-8004.336.1at 325.744 kb on - strand, within Xcc-8004.336.1at 325.744 kb on - strand, within Xcc-8004.336.1at 325.991 kb on - strandat 325.991 kb on - strandat 326.003 kb on + strandat 326.004 kb on - strandat 326.004 kb on - strandat 326.004 kb on - strandat 326.207 kb on - strand, within Xcc-8004.337.1at 326.207 kb on - strand, within Xcc-8004.337.1at 326.234 kb on - strand, within Xcc-8004.337.1at 326.477 kb on - strand, within Xcc-8004.337.1at 326.477 kb on - strand, within Xcc-8004.337.1at 326.570 kb on - strand, within Xcc-8004.337.1at 326.795 kb on - strand, within Xcc-8004.337.1at 326.795 kb on - strand, within Xcc-8004.337.1at 326.795 kb on - strand, within Xcc-8004.337.1at 326.906 kb on - strand, within Xcc-8004.337.1at 326.959 kb on + strandat 326.959 kb on + strandat 327.031 kb on + strandat 327.300 kb on + strand, within Xcc-8004.338.1at 327.300 kb on + strand, within Xcc-8004.338.1at 327.300 kb on + strand, within Xcc-8004.338.1at 327.300 kb on + strand, within Xcc-8004.338.1at 327.300 kb on + strand, within Xcc-8004.338.1at 327.301 kb on - strand, within Xcc-8004.338.1at 327.301 kb on - strand, within Xcc-8004.338.1at 327.301 kb on - strand, within Xcc-8004.338.1at 327.537 kb on + strand, within Xcc-8004.338.1at 327.538 kb on - strand, within Xcc-8004.338.1at 327.576 kb on + strand, within Xcc-8004.338.1at 327.576 kb on + strand, within Xcc-8004.338.1at 327.576 kb on + strand, within Xcc-8004.338.1at 327.576 kb on + strand, within Xcc-8004.338.1at 327.576 kb on + strand, within Xcc-8004.338.1at 327.577 kb on - strand, within Xcc-8004.338.1at 327.577 kb on - strand, within Xcc-8004.338.1at 327.577 kb on - strand, within Xcc-8004.338.1at 327.577 kb on - strand, within Xcc-8004.338.1at 327.627 kb on + strand, within Xcc-8004.338.1at 327.627 kb on + strand, within Xcc-8004.338.1at 327.627 kb on + strand, within Xcc-8004.338.1at 327.628 kb on - strand, within Xcc-8004.338.1at 327.657 kb on + strand, within Xcc-8004.338.1at 327.658 kb on - strand, within Xcc-8004.338.1at 327.658 kb on - strand, within Xcc-8004.338.1at 327.658 kb on - strand, within Xcc-8004.338.1at 327.658 kb on - strand, within Xcc-8004.338.1at 327.658 kb on - strand, within Xcc-8004.338.1at 327.685 kb on + strandat 327.685 kb on + strandat 327.686 kb on - strandat 327.701 kb on + strandat 327.711 kb on + strandat 327.711 kb on + strandat 327.712 kb on - strandat 327.874 kb on + strandat 327.874 kb on + strandat 327.875 kb on - strandat 327.875 kb on - strandat 327.875 kb on - strandat 327.944 kb on + strandat 327.974 kb on - strandat 328.003 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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325,048 + Xcc-8004.335.1 0.88 +1.0
325,048 + Xcc-8004.335.1 0.88 -1.0
325,048 + Xcc-8004.335.1 0.88 -0.3
325,048 + Xcc-8004.335.1 0.88 +0.0
325,048 + Xcc-8004.335.1 0.88 +0.1
325,048 + Xcc-8004.335.1 0.88 +1.0
325,049 - Xcc-8004.335.1 0.88 -1.1
325,049 - Xcc-8004.335.1 0.88 -1.1
325,049 - Xcc-8004.335.1 0.88 -0.9
325,212 + -0.8
325,212 + -1.2
325,212 + +0.4
325,212 + -0.3
325,212 + -2.4
325,213 - +0.3
325,213 - -0.9
325,213 - +0.7
325,220 + +1.1
325,220 + -0.3
325,220 + +1.9
325,220 + +1.4
325,220 + +0.1
325,220 + +0.8
325,220 + +1.4
325,221 - -1.5
325,221 - -1.1
325,221 - -0.8
325,221 - -1.3
325,221 - +0.9
325,221 - -0.4
325,234 + -0.3
325,234 + -0.3
325,435 + Xcc-8004.336.1 0.32 -2.4
325,435 + Xcc-8004.336.1 0.32 -3.8
325,436 - Xcc-8004.336.1 0.32 -2.4
325,436 - Xcc-8004.336.1 0.32 -1.5
325,587 + Xcc-8004.336.1 0.55 +0.4
325,587 + Xcc-8004.336.1 0.55 -2.2
325,587 + Xcc-8004.336.1 0.55 -1.5
325,587 + Xcc-8004.336.1 0.55 -3.0
325,587 + Xcc-8004.336.1 0.55 -2.2
325,587 + Xcc-8004.336.1 0.55 -0.1
325,587 + Xcc-8004.336.1 0.55 -1.6
325,587 + Xcc-8004.336.1 0.55 -1.9
325,587 + Xcc-8004.336.1 0.55 -1.9
325,588 - Xcc-8004.336.1 0.55 -0.8
325,588 - Xcc-8004.336.1 0.55 -2.7
325,588 - Xcc-8004.336.1 0.55 +1.7
325,588 - Xcc-8004.336.1 0.55 -1.1
325,588 - Xcc-8004.336.1 0.55 -0.6
325,743 + Xcc-8004.336.1 0.79 -0.5
325,743 + Xcc-8004.336.1 0.79 +0.4
325,743 + Xcc-8004.336.1 0.79 -0.9
325,744 - Xcc-8004.336.1 0.79 -2.7
325,744 - Xcc-8004.336.1 0.79 -2.1
325,744 - Xcc-8004.336.1 0.79 -1.5
325,744 - Xcc-8004.336.1 0.79 -0.9
325,744 - Xcc-8004.336.1 0.79 -0.9
325,991 - -2.0
325,991 - -0.5
326,003 + -0.3
326,004 - -0.1
326,004 - +0.3
326,004 - +0.5
326,207 - Xcc-8004.337.1 0.22 -2.0
326,207 - Xcc-8004.337.1 0.22 +0.1
326,234 - Xcc-8004.337.1 0.25 -1.5
326,477 - Xcc-8004.337.1 0.47 -0.9
326,477 - Xcc-8004.337.1 0.47 +0.2
326,570 - Xcc-8004.337.1 0.55 -0.1
326,795 - Xcc-8004.337.1 0.76 +0.7
326,795 - Xcc-8004.337.1 0.76 -0.9
326,795 - Xcc-8004.337.1 0.76 -0.9
326,906 - Xcc-8004.337.1 0.86 -0.8
326,959 + +0.5
326,959 + +1.4
327,031 + +0.6
327,300 + Xcc-8004.338.1 0.36 -1.8
327,300 + Xcc-8004.338.1 0.36 +0.2
327,300 + Xcc-8004.338.1 0.36 +0.9
327,300 + Xcc-8004.338.1 0.36 +0.0
327,300 + Xcc-8004.338.1 0.36 -0.0
327,301 - Xcc-8004.338.1 0.36 -0.4
327,301 - Xcc-8004.338.1 0.36 -0.4
327,301 - Xcc-8004.338.1 0.36 +0.1
327,537 + Xcc-8004.338.1 0.71 +2.7
327,538 - Xcc-8004.338.1 0.71 +0.1
327,576 + Xcc-8004.338.1 0.77 +0.3
327,576 + Xcc-8004.338.1 0.77 +0.4
327,576 + Xcc-8004.338.1 0.77 -0.3
327,576 + Xcc-8004.338.1 0.77 +1.0
327,576 + Xcc-8004.338.1 0.77 +1.5
327,577 - Xcc-8004.338.1 0.77 +0.6
327,577 - Xcc-8004.338.1 0.77 -2.0
327,577 - Xcc-8004.338.1 0.77 -0.0
327,577 - Xcc-8004.338.1 0.77 +0.8
327,627 + Xcc-8004.338.1 0.84 +0.1
327,627 + Xcc-8004.338.1 0.84 -0.5
327,627 + Xcc-8004.338.1 0.84 -0.8
327,628 - Xcc-8004.338.1 0.84 -0.3
327,657 + Xcc-8004.338.1 0.89 +0.5
327,658 - Xcc-8004.338.1 0.89 +0.4
327,658 - Xcc-8004.338.1 0.89 +0.5
327,658 - Xcc-8004.338.1 0.89 -1.3
327,658 - Xcc-8004.338.1 0.89 +0.4
327,658 - Xcc-8004.338.1 0.89 -0.1
327,685 + -0.1
327,685 + +0.4
327,686 - +0.4
327,701 + -0.6
327,711 + -0.0
327,711 + +0.3
327,712 - -1.1
327,874 + -0.3
327,874 + -0.1
327,875 - -0.0
327,875 - +0.3
327,875 - +0.5
327,944 + +0.1
327,974 - -0.0
328,003 - -0.2

Or see this region's nucleotide sequence