Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3346.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
3,244,361	+		Xcc-8004.3345.1	0.10	-0.2
3,244,361	+		Xcc-8004.3345.1	0.10	+0.0
3,244,361	+		Xcc-8004.3345.1	0.10	+0.3
3,244,362	-		Xcc-8004.3345.1	0.10	-0.3
3,244,362	-		Xcc-8004.3345.1	0.10	-0.1
3,244,392	-		Xcc-8004.3345.1	0.14	-0.1
3,244,434	-		Xcc-8004.3345.1	0.19	+0.2
3,244,434	-		Xcc-8004.3345.1	0.19	+2.0
3,244,511	-		Xcc-8004.3345.1	0.29	-0.1
3,244,511	-		Xcc-8004.3345.1	0.29	-0.9
3,244,560	-		Xcc-8004.3345.1	0.35	+0.7
3,244,560	-		Xcc-8004.3345.1	0.35	-0.8
3,244,850	+		Xcc-8004.3345.1	0.72	-0.4
3,244,925	+		Xcc-8004.3345.1	0.81	+0.6
3,244,925	+		Xcc-8004.3345.1	0.81	-0.5
3,244,925	+		Xcc-8004.3345.1	0.81	+0.9
3,244,925	+		Xcc-8004.3345.1	0.81	-0.1
3,244,925	+		Xcc-8004.3345.1	0.81	+0.0
3,244,926	-		Xcc-8004.3345.1	0.81	+0.1
3,244,926	-		Xcc-8004.3345.1	0.81	+0.1
3,245,023	+				+0.3
3,245,023	+				-1.6
3,245,023	+				+0.2
3,245,023	+				+1.4
3,245,023	+				-0.5
3,245,023	+				+0.4
3,245,023	+				-0.6
3,245,023	+				-0.8
3,245,023	+				+0.2
3,245,023	+				-0.3
3,245,024	-				-1.0
3,245,024	-				-0.8
3,245,024	-				+0.4
3,245,024	-				+0.2
3,245,024	-				-0.7
3,245,024	-				+0.3
3,245,024	-				-0.2
3,245,024	-				-0.1
3,245,024	-				-1.1
3,245,024	-				-1.1
3,245,108	+				-1.0
3,245,168	+				-2.7
3,245,168	+				-0.5
3,245,168	+				+0.1
3,245,168	+				-1.1
3,245,168	+				+0.9
3,245,168	+				+0.4
3,245,169	-				+0.2
3,245,243	+		Xcc-8004.3346.1	0.11	-1.1
3,245,304	+		Xcc-8004.3346.1	0.20	+0.4
3,245,469	-		Xcc-8004.3346.1	0.43	-1.4
3,245,578	-		Xcc-8004.3346.1	0.59	-2.4
3,245,669	+		Xcc-8004.3346.1	0.72	+0.2
3,245,751	-		Xcc-8004.3346.1	0.84	-1.3
3,245,765	+		Xcc-8004.3346.1	0.86	+0.2
3,245,765	+		Xcc-8004.3346.1	0.86	-0.3
3,245,766	-		Xcc-8004.3346.1	0.86	-0.3
3,245,768	+		Xcc-8004.3346.1	0.86	-2.1
3,245,768	+		Xcc-8004.3346.1	0.86	-2.4
3,245,768	+		Xcc-8004.3346.1	0.86	-2.2
3,245,768	+		Xcc-8004.3346.1	0.86	-1.8
3,245,768	+		Xcc-8004.3346.1	0.86	-1.8
3,245,768	+		Xcc-8004.3346.1	0.86	-2.4
3,245,769	-		Xcc-8004.3346.1	0.86	-1.8
3,245,923	-				-1.2
3,245,951	-				+0.6
3,245,951	-				-0.6
3,245,951	-				-0.1
3,245,966	+				-0.1
3,245,967	-				+0.2
3,245,967	-				-0.8
3,245,967	-				-0.1
3,245,999	+				-0.3
3,246,010	+				-0.1
3,246,016	-				+0.9
3,246,080	+				-1.3
3,246,080	+				-1.5
3,246,080	+				+0.5
3,246,080	+				-0.1
3,246,081	-				+0.9