Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3324.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
3,221,596	-		Xcc-8004.3322.1	0.46	+0.0
3,221,596	-		Xcc-8004.3322.1	0.46	-0.4
3,221,782	+				+0.7
3,221,782	+				+0.7
3,221,782	+				-0.1
3,221,782	+				+0.4
3,221,782	+				-1.0
3,221,782	+				+0.1
3,221,783	-				-0.4
3,221,783	-				+1.2
3,221,783	-				+0.2
3,221,783	-				-1.6
3,221,783	-				-0.4
3,221,783	-				-0.7
3,221,783	-				-1.4
3,221,783	-				-0.1
3,221,783	-				-0.7
3,221,783	-				-0.7
3,221,783	-				-1.0
3,221,783	-				-0.4
3,221,783	-				-0.1
3,221,912	-		Xcc-8004.3323.1	0.21	+0.3
3,222,019	+		Xcc-8004.3323.1	0.38	-0.1
3,222,019	+		Xcc-8004.3323.1	0.38	+1.2
3,222,019	+		Xcc-8004.3323.1	0.38	-0.8
3,222,019	+		Xcc-8004.3323.1	0.38	+0.0
3,222,019	+		Xcc-8004.3323.1	0.38	-0.4
3,222,019	+		Xcc-8004.3323.1	0.38	+0.3
3,222,019	+		Xcc-8004.3323.1	0.38	+0.9
3,222,019	+		Xcc-8004.3323.1	0.38	-0.3
3,222,019	+		Xcc-8004.3323.1	0.38	-1.1
3,222,019	+		Xcc-8004.3323.1	0.38	-0.1
3,222,019	+		Xcc-8004.3323.1	0.38	+0.1
3,222,019	+		Xcc-8004.3323.1	0.38	-0.0
3,222,019	+		Xcc-8004.3323.1	0.38	-1.1
3,222,019	+		Xcc-8004.3323.1	0.38	-0.3
3,222,019	+		Xcc-8004.3323.1	0.38	+0.3
3,222,020	-		Xcc-8004.3323.1	0.38	+0.3
3,222,020	-		Xcc-8004.3323.1	0.38	-0.1
3,222,020	-		Xcc-8004.3323.1	0.38	-2.8
3,222,020	-		Xcc-8004.3323.1	0.38	-0.3
3,222,020	-		Xcc-8004.3323.1	0.38	-0.5
3,222,020	-		Xcc-8004.3323.1	0.38	+0.1
3,222,020	-		Xcc-8004.3323.1	0.38	-1.3
3,222,020	-		Xcc-8004.3323.1	0.38	-0.8
3,222,020	-		Xcc-8004.3323.1	0.38	+0.4
3,222,020	-		Xcc-8004.3323.1	0.38	+0.4
3,222,020	-		Xcc-8004.3323.1	0.38	-0.6
3,222,020	-		Xcc-8004.3323.1	0.38	-0.5
3,222,020	-		Xcc-8004.3323.1	0.38	+0.6
3,222,020	-		Xcc-8004.3323.1	0.38	+0.7
3,222,020	-		Xcc-8004.3323.1	0.38	+0.1
3,222,020	-		Xcc-8004.3323.1	0.38	-0.5
3,222,020	-		Xcc-8004.3323.1	0.38	+0.2
3,222,079	+		Xcc-8004.3323.1	0.47	-0.4
3,222,079	+		Xcc-8004.3323.1	0.47	+1.2
3,222,080	-		Xcc-8004.3323.1	0.47	+0.2
3,222,080	-		Xcc-8004.3323.1	0.47	-2.7
3,222,080	-		Xcc-8004.3323.1	0.47	-1.8
3,222,405	+				-0.8
3,222,405	+				+1.0
3,222,406	-				+0.4
3,222,455	+				-0.2
3,222,455	+				-0.2
3,222,475	+				-0.4
3,222,475	+				-0.3
3,222,475	+				-0.5
3,222,475	+				+0.1
3,222,476	-				-1.7
3,222,476	-				+1.0
3,222,476	-				-0.0
3,222,476	-				+0.5
3,222,476	-				-0.1
3,222,476	-				+0.5
3,222,476	-				-1.4
3,222,476	-				+0.4
3,222,476	-				-0.6
3,222,476	-				-0.6
3,222,476	-				-1.7
3,222,476	-				-0.1
3,222,501	+				-0.4
3,222,501	+				-1.3
3,222,502	-				+0.2
3,222,502	-				-0.5
3,222,619	+		Xcc-8004.3324.1	0.16	-1.6
3,222,620	-		Xcc-8004.3324.1	0.16	-1.6
3,222,620	-		Xcc-8004.3324.1	0.16	-0.8
3,222,726	+		Xcc-8004.3324.1	0.32	+0.2
3,222,727	-		Xcc-8004.3324.1	0.33	-1.8
3,222,727	-		Xcc-8004.3324.1	0.33	-2.0
3,222,805	+		Xcc-8004.3324.1	0.44	-0.6
3,222,977	+		Xcc-8004.3324.1	0.70	-3.0
3,222,977	+		Xcc-8004.3324.1	0.70	+0.7
3,222,977	+		Xcc-8004.3324.1	0.70	-2.3
3,222,977	+		Xcc-8004.3324.1	0.70	-0.3
3,222,978	-		Xcc-8004.3324.1	0.70	-1.1
3,222,978	-		Xcc-8004.3324.1	0.70	-1.4
3,223,055	-		Xcc-8004.3324.1	0.82	-2.3
3,223,126	+				+0.2
3,223,126	+				-2.3
3,223,126	+				+1.3
3,223,161	+				+0.4
3,223,162	-				-1.2
3,223,162	-				+1.7
3,223,216	+				+0.2
3,223,216	+				+0.4
3,223,216	+				+0.4
3,223,217	-				+0.5
3,223,217	-				-0.8
3,223,217	-				-1.2
3,223,387	+		Xcc-8004.3325.1	0.26	-1.1
3,223,387	+		Xcc-8004.3325.1	0.26	-0.8
3,223,388	-		Xcc-8004.3325.1	0.26	-0.4
3,223,388	-		Xcc-8004.3325.1	0.26	-0.8
3,223,393	+		Xcc-8004.3325.1	0.27	-0.5
3,223,394	-		Xcc-8004.3325.1	0.27	-1.1
3,223,394	-		Xcc-8004.3325.1	0.27	-0.6
3,223,394	-		Xcc-8004.3325.1	0.27	-0.0
3,223,502	+		Xcc-8004.3325.1	0.48	-0.7
3,223,606	+		Xcc-8004.3325.1	0.67	-0.5
3,223,606	+		Xcc-8004.3325.1	0.67	-1.8
3,223,633	+		Xcc-8004.3325.1	0.72	+0.7
3,223,633	+		Xcc-8004.3325.1	0.72	-0.8
3,223,633	+		Xcc-8004.3325.1	0.72	-1.1
3,223,634	-		Xcc-8004.3325.1	0.73	+0.3
3,223,759	+				-0.5
3,223,760	-				-0.4
3,223,760	-				+0.4
3,223,760	-				-0.8
3,224,099	+		Xcc-8004.3326.1	0.17	-0.7
3,224,100	-		Xcc-8004.3326.1	0.17	+1.7