Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3313.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
3,216,252	+		Xcc-8004.3312.1	0.47	-0.1
3,216,252	+		Xcc-8004.3312.1	0.47	-0.3
3,216,253	-		Xcc-8004.3312.1	0.47	+0.9
3,216,279	+		Xcc-8004.3312.1	0.49	+0.3
3,216,279	+		Xcc-8004.3312.1	0.49	-0.5
3,216,279	+		Xcc-8004.3312.1	0.49	+0.3
3,216,279	+		Xcc-8004.3312.1	0.49	-0.1
3,216,280	-		Xcc-8004.3312.1	0.49	+1.3
3,216,478	+		Xcc-8004.3312.1	0.66	-0.3
3,216,480	+		Xcc-8004.3312.1	0.66	+0.2
3,216,480	+		Xcc-8004.3312.1	0.66	+0.1
3,216,480	+		Xcc-8004.3312.1	0.66	-0.7
3,216,480	+		Xcc-8004.3312.1	0.66	-0.5
3,216,480	+		Xcc-8004.3312.1	0.66	+0.2
3,216,481	-		Xcc-8004.3312.1	0.66	+0.0
3,216,481	-		Xcc-8004.3312.1	0.66	+0.5
3,216,481	-		Xcc-8004.3312.1	0.66	-0.8
3,216,542	+		Xcc-8004.3312.1	0.71	-0.1
3,216,729	+		Xcc-8004.3312.1	0.87	+0.5
3,216,729	+		Xcc-8004.3312.1	0.87	+1.5
3,216,729	+		Xcc-8004.3312.1	0.87	-0.3
3,216,730	-		Xcc-8004.3312.1	0.87	-0.6
3,216,958	+				-0.1
3,216,958	+				+0.0
3,216,958	+				-0.1
3,216,958	+				-0.2
3,216,958	+				-1.0
3,216,958	+				-0.6
3,216,958	+				-0.0
3,216,959	-				-0.0
3,216,959	-				+0.3
3,216,959	-				-0.3
3,216,959	-				-2.0
3,216,959	-				+0.5
3,216,959	-				+0.8
3,216,959	-				-0.5
3,216,959	-				+0.2
3,216,959	-				+0.5
3,216,959	-				+0.2
3,216,959	-				+0.4
3,216,961	+				+0.4
3,216,961	+				+0.3
3,216,961	+				-0.7
3,216,961	+				-0.8
3,216,961	+				-0.4
3,216,962	-				-0.2
3,216,962	-				+0.2
3,216,962	-				+0.0
3,216,962	-				+1.2
3,216,962	-				+0.6
3,216,962	-				+0.2
3,216,962	-				-0.1
3,216,962	-				+0.7
3,217,108	+				+1.1
3,217,108	+				+0.4
3,217,108	+				+0.4
3,217,108	+				-2.0
3,217,108	+				+1.1
3,217,135	+				+0.5
3,217,136	-				+0.1
3,217,136	-				-0.3
3,217,192	-				-0.3
3,217,192	-				-0.9
3,217,192	-				-1.4
3,217,269	+		Xcc-8004.3313.1	0.16	+0.9
3,217,270	-		Xcc-8004.3313.1	0.16	-1.0
3,217,381	-		Xcc-8004.3313.1	0.40	-0.6
3,217,381	-		Xcc-8004.3313.1	0.40	-2.0
3,217,381	-		Xcc-8004.3313.1	0.40	-1.5
3,217,381	-		Xcc-8004.3313.1	0.40	-0.3
3,217,488	+		Xcc-8004.3313.1	0.64	-1.6
3,217,489	-		Xcc-8004.3313.1	0.64	-1.7
3,217,576	-		Xcc-8004.3313.1	0.84	+0.0
3,217,709	+				-1.3
3,217,710	-				-1.0
3,217,749	+				-2.5
3,217,749	+				-0.7
3,217,749	+				-0.9
3,217,749	+				-0.3
3,217,750	-				-0.4
3,217,750	-				+0.3
3,217,782	-				-0.4
3,217,791	+				-1.8
3,217,791	+				-0.5
3,217,791	+				-3.8
3,217,791	+				-1.7
3,217,792	-				+0.2
3,217,792	-				-1.1
3,217,792	-				+0.5
3,217,792	-				-1.5
3,217,929	-				-0.6
3,217,929	-				-0.3
3,217,939	-				+0.1
3,217,939	-				+0.2
3,217,939	-				-0.6
3,217,939	-				+0.7
3,217,943	-				+0.6
3,217,943	-				-1.4
3,217,943	-				-0.7
3,217,943	-				-1.3
3,217,964	-		Xcc-8004.3314.1	0.10	-0.1