Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3283.1

Experiment: Pectin from apple 2 g/L (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.3282.1 and Xcc-8004.3283.1 are separated by 66 nucleotidesXcc-8004.3283.1 and Xcc-8004.3284.1 are separated by 175 nucleotides Xcc-8004.3282.1: Xcc-8004.3282.1 - Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51), at 3,182,696 to 3,183,898 Xcc-8004.3282.1 Xcc-8004.3283.1: Xcc-8004.3283.1 - Phosphoserine aminotransferase (EC 2.6.1.52), at 3,183,965 to 3,185,050 Xcc-8004.3283.1 Xcc-8004.3284.1: Xcc-8004.3284.1 - Putative sulfite oxidase subunit YedY, at 3,185,226 to 3,186,194 Xcc-8004.3284.1 Position (kb) 3183 3184 3185 3186Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3183.054 kb on + strand, within Xcc-8004.3282.1at 3183.055 kb on - strand, within Xcc-8004.3282.1at 3183.055 kb on - strand, within Xcc-8004.3282.1at 3183.055 kb on - strand, within Xcc-8004.3282.1at 3183.055 kb on - strand, within Xcc-8004.3282.1at 3183.103 kb on + strand, within Xcc-8004.3282.1at 3183.104 kb on - strand, within Xcc-8004.3282.1at 3183.104 kb on - strand, within Xcc-8004.3282.1at 3183.213 kb on + strand, within Xcc-8004.3282.1at 3183.213 kb on + strand, within Xcc-8004.3282.1at 3183.214 kb on - strand, within Xcc-8004.3282.1at 3183.214 kb on - strand, within Xcc-8004.3282.1at 3183.259 kb on - strand, within Xcc-8004.3282.1at 3183.259 kb on - strand, within Xcc-8004.3282.1at 3183.259 kb on - strand, within Xcc-8004.3282.1at 3183.642 kb on + strand, within Xcc-8004.3282.1at 3183.642 kb on + strand, within Xcc-8004.3282.1at 3183.643 kb on - strand, within Xcc-8004.3282.1at 3183.643 kb on - strand, within Xcc-8004.3282.1at 3183.643 kb on - strand, within Xcc-8004.3282.1at 3183.643 kb on - strand, within Xcc-8004.3282.1at 3183.844 kb on + strandat 3183.917 kb on + strandat 3183.918 kb on - strandat 3183.918 kb on - strandat 3184.038 kb on + strandat 3184.038 kb on + strandat 3184.038 kb on + strandat 3184.039 kb on - strandat 3184.197 kb on + strand, within Xcc-8004.3283.1at 3184.227 kb on + strand, within Xcc-8004.3283.1at 3184.318 kb on - strand, within Xcc-8004.3283.1at 3184.318 kb on - strand, within Xcc-8004.3283.1at 3184.318 kb on - strand, within Xcc-8004.3283.1at 3184.330 kb on + strand, within Xcc-8004.3283.1at 3184.348 kb on + strand, within Xcc-8004.3283.1at 3184.348 kb on + strand, within Xcc-8004.3283.1at 3184.348 kb on + strand, within Xcc-8004.3283.1at 3184.349 kb on - strand, within Xcc-8004.3283.1at 3184.349 kb on - strand, within Xcc-8004.3283.1at 3184.375 kb on - strand, within Xcc-8004.3283.1at 3184.375 kb on - strand, within Xcc-8004.3283.1at 3184.375 kb on - strand, within Xcc-8004.3283.1at 3184.445 kb on - strand, within Xcc-8004.3283.1at 3184.479 kb on + strand, within Xcc-8004.3283.1at 3184.479 kb on + strand, within Xcc-8004.3283.1at 3184.479 kb on + strand, within Xcc-8004.3283.1at 3184.479 kb on + strand, within Xcc-8004.3283.1at 3184.479 kb on + strand, within Xcc-8004.3283.1at 3184.479 kb on + strand, within Xcc-8004.3283.1at 3184.480 kb on - strand, within Xcc-8004.3283.1at 3184.491 kb on + strand, within Xcc-8004.3283.1at 3184.671 kb on + strand, within Xcc-8004.3283.1at 3184.671 kb on + strand, within Xcc-8004.3283.1at 3184.671 kb on + strand, within Xcc-8004.3283.1at 3184.672 kb on - strand, within Xcc-8004.3283.1at 3184.713 kb on + strand, within Xcc-8004.3283.1at 3184.713 kb on + strand, within Xcc-8004.3283.1at 3184.713 kb on + strand, within Xcc-8004.3283.1at 3184.713 kb on + strand, within Xcc-8004.3283.1at 3184.713 kb on + strand, within Xcc-8004.3283.1at 3184.713 kb on + strand, within Xcc-8004.3283.1at 3184.714 kb on - strand, within Xcc-8004.3283.1at 3184.714 kb on - strand, within Xcc-8004.3283.1at 3184.714 kb on - strand, within Xcc-8004.3283.1at 3184.714 kb on - strand, within Xcc-8004.3283.1at 3184.764 kb on + strand, within Xcc-8004.3283.1at 3184.764 kb on + strand, within Xcc-8004.3283.1at 3184.765 kb on - strand, within Xcc-8004.3283.1at 3184.765 kb on - strand, within Xcc-8004.3283.1at 3184.765 kb on - strand, within Xcc-8004.3283.1at 3185.068 kb on + strandat 3185.068 kb on + strandat 3185.068 kb on + strandat 3185.068 kb on + strandat 3185.076 kb on + strandat 3185.076 kb on + strandat 3185.077 kb on - strandat 3185.077 kb on - strandat 3185.077 kb on - strandat 3185.077 kb on - strandat 3185.077 kb on - strandat 3185.077 kb on - strandat 3185.077 kb on - strandat 3185.077 kb on - strandat 3185.077 kb on - strandat 3185.077 kb on - strandat 3185.077 kb on - strandat 3185.077 kb on - strandat 3185.079 kb on + strandat 3185.079 kb on + strandat 3185.079 kb on + strandat 3185.079 kb on + strandat 3185.079 kb on + strandat 3185.080 kb on - strandat 3185.080 kb on - strandat 3185.151 kb on + strandat 3185.151 kb on + strandat 3185.152 kb on - strandat 3185.192 kb on - strandat 3185.457 kb on + strand, within Xcc-8004.3284.1at 3185.457 kb on + strand, within Xcc-8004.3284.1at 3185.457 kb on + strand, within Xcc-8004.3284.1at 3185.457 kb on + strand, within Xcc-8004.3284.1at 3185.457 kb on + strand, within Xcc-8004.3284.1at 3185.458 kb on - strand, within Xcc-8004.3284.1at 3185.458 kb on - strand, within Xcc-8004.3284.1at 3185.458 kb on - strand, within Xcc-8004.3284.1at 3185.458 kb on - strand, within Xcc-8004.3284.1at 3185.458 kb on - strand, within Xcc-8004.3284.1at 3185.486 kb on + strand, within Xcc-8004.3284.1at 3185.487 kb on - strand, within Xcc-8004.3284.1at 3185.623 kb on - strand, within Xcc-8004.3284.1at 3185.623 kb on - strand, within Xcc-8004.3284.1at 3185.724 kb on + strand, within Xcc-8004.3284.1at 3185.724 kb on + strand, within Xcc-8004.3284.1at 3185.724 kb on + strand, within Xcc-8004.3284.1at 3185.724 kb on + strand, within Xcc-8004.3284.1at 3185.724 kb on + strand, within Xcc-8004.3284.1at 3185.724 kb on + strand, within Xcc-8004.3284.1at 3185.724 kb on + strand, within Xcc-8004.3284.1at 3185.724 kb on + strand, within Xcc-8004.3284.1at 3185.724 kb on + strand, within Xcc-8004.3284.1at 3185.724 kb on + strand, within Xcc-8004.3284.1at 3185.724 kb on + strand, within Xcc-8004.3284.1at 3185.725 kb on - strand, within Xcc-8004.3284.1at 3185.725 kb on - strand, within Xcc-8004.3284.1at 3185.725 kb on - strand, within Xcc-8004.3284.1at 3185.725 kb on - strand, within Xcc-8004.3284.1at 3185.725 kb on - strand, within Xcc-8004.3284.1at 3185.725 kb on - strand, within Xcc-8004.3284.1at 3185.725 kb on - strand, within Xcc-8004.3284.1at 3185.725 kb on - strand, within Xcc-8004.3284.1at 3185.725 kb on - strand, within Xcc-8004.3284.1at 3185.725 kb on - strand, within Xcc-8004.3284.1at 3185.725 kb on - strand, within Xcc-8004.3284.1at 3185.735 kb on + strand, within Xcc-8004.3284.1at 3185.735 kb on + strand, within Xcc-8004.3284.1at 3185.735 kb on + strand, within Xcc-8004.3284.1at 3185.736 kb on - strand, within Xcc-8004.3284.1at 3185.736 kb on - strand, within Xcc-8004.3284.1at 3185.771 kb on - strand, within Xcc-8004.3284.1at 3185.771 kb on - strand, within Xcc-8004.3284.1at 3185.771 kb on - strand, within Xcc-8004.3284.1at 3185.919 kb on + strand, within Xcc-8004.3284.1at 3185.919 kb on + strand, within Xcc-8004.3284.1at 3185.920 kb on - strand, within Xcc-8004.3284.1at 3185.920 kb on - strand, within Xcc-8004.3284.1at 3185.920 kb on - strand, within Xcc-8004.3284.1at 3185.920 kb on - strand, within Xcc-8004.3284.1at 3186.010 kb on - strand, within Xcc-8004.3284.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
remove
3,183,054 + Xcc-8004.3282.1 0.30 +0.7
3,183,055 - Xcc-8004.3282.1 0.30 -2.1
3,183,055 - Xcc-8004.3282.1 0.30 +0.2
3,183,055 - Xcc-8004.3282.1 0.30 -2.2
3,183,055 - Xcc-8004.3282.1 0.30 +0.5
3,183,103 + Xcc-8004.3282.1 0.34 -1.6
3,183,104 - Xcc-8004.3282.1 0.34 -1.2
3,183,104 - Xcc-8004.3282.1 0.34 -1.6
3,183,213 + Xcc-8004.3282.1 0.43 -3.3
3,183,213 + Xcc-8004.3282.1 0.43 -3.6
3,183,214 - Xcc-8004.3282.1 0.43 -1.4
3,183,214 - Xcc-8004.3282.1 0.43 -3.0
3,183,259 - Xcc-8004.3282.1 0.47 -1.5
3,183,259 - Xcc-8004.3282.1 0.47 -0.6
3,183,259 - Xcc-8004.3282.1 0.47 -2.0
3,183,642 + Xcc-8004.3282.1 0.79 -1.3
3,183,642 + Xcc-8004.3282.1 0.79 -3.5
3,183,643 - Xcc-8004.3282.1 0.79 -2.0
3,183,643 - Xcc-8004.3282.1 0.79 -3.2
3,183,643 - Xcc-8004.3282.1 0.79 -1.7
3,183,643 - Xcc-8004.3282.1 0.79 -2.4
3,183,844 + -3.0
3,183,917 + -1.1
3,183,918 - -1.7
3,183,918 - -1.7
3,184,038 + -1.3
3,184,038 + -2.2
3,184,038 + -0.5
3,184,039 - -2.1
3,184,197 + Xcc-8004.3283.1 0.21 -1.1
3,184,227 + Xcc-8004.3283.1 0.24 -0.8
3,184,318 - Xcc-8004.3283.1 0.33 -2.5
3,184,318 - Xcc-8004.3283.1 0.33 +0.0
3,184,318 - Xcc-8004.3283.1 0.33 -0.6
3,184,330 + Xcc-8004.3283.1 0.34 -3.7
3,184,348 + Xcc-8004.3283.1 0.35 -1.3
3,184,348 + Xcc-8004.3283.1 0.35 +0.6
3,184,348 + Xcc-8004.3283.1 0.35 -1.3
3,184,349 - Xcc-8004.3283.1 0.35 -2.3
3,184,349 - Xcc-8004.3283.1 0.35 -4.3
3,184,375 - Xcc-8004.3283.1 0.38 -2.6
3,184,375 - Xcc-8004.3283.1 0.38 -1.0
3,184,375 - Xcc-8004.3283.1 0.38 -1.0
3,184,445 - Xcc-8004.3283.1 0.44 -1.1
3,184,479 + Xcc-8004.3283.1 0.47 -2.8
3,184,479 + Xcc-8004.3283.1 0.47 -1.8
3,184,479 + Xcc-8004.3283.1 0.47 -2.3
3,184,479 + Xcc-8004.3283.1 0.47 -3.0
3,184,479 + Xcc-8004.3283.1 0.47 -4.1
3,184,479 + Xcc-8004.3283.1 0.47 -2.5
3,184,480 - Xcc-8004.3283.1 0.47 -3.3
3,184,491 + Xcc-8004.3283.1 0.48 -2.0
3,184,671 + Xcc-8004.3283.1 0.65 -1.8
3,184,671 + Xcc-8004.3283.1 0.65 -3.0
3,184,671 + Xcc-8004.3283.1 0.65 -3.8
3,184,672 - Xcc-8004.3283.1 0.65 -2.0
3,184,713 + Xcc-8004.3283.1 0.69 -2.6
3,184,713 + Xcc-8004.3283.1 0.69 -2.6
3,184,713 + Xcc-8004.3283.1 0.69 -2.3
3,184,713 + Xcc-8004.3283.1 0.69 -2.6
3,184,713 + Xcc-8004.3283.1 0.69 -3.0
3,184,713 + Xcc-8004.3283.1 0.69 -3.3
3,184,714 - Xcc-8004.3283.1 0.69 -4.8
3,184,714 - Xcc-8004.3283.1 0.69 -2.8
3,184,714 - Xcc-8004.3283.1 0.69 -0.3
3,184,714 - Xcc-8004.3283.1 0.69 -1.4
3,184,764 + Xcc-8004.3283.1 0.74 -2.6
3,184,764 + Xcc-8004.3283.1 0.74 -3.2
3,184,765 - Xcc-8004.3283.1 0.74 -2.7
3,184,765 - Xcc-8004.3283.1 0.74 -3.0
3,184,765 - Xcc-8004.3283.1 0.74 -2.7
3,185,068 + -3.1
3,185,068 + -1.0
3,185,068 + -1.1
3,185,068 + -0.5
3,185,076 + -0.3
3,185,076 + -1.1
3,185,077 - +0.7
3,185,077 - -1.7
3,185,077 - +0.1
3,185,077 - +0.7
3,185,077 - +0.8
3,185,077 - +0.6
3,185,077 - -1.4
3,185,077 - +0.0
3,185,077 - -0.4
3,185,077 - +0.8
3,185,077 - -0.0
3,185,077 - -1.0
3,185,079 + -1.6
3,185,079 + -1.9
3,185,079 + -1.1
3,185,079 + -3.2
3,185,079 + -2.7
3,185,080 - +0.1
3,185,080 - -1.3
3,185,151 + +0.5
3,185,151 + -2.0
3,185,152 - -0.3
3,185,192 - -0.5
3,185,457 + Xcc-8004.3284.1 0.24 -0.5
3,185,457 + Xcc-8004.3284.1 0.24 -1.3
3,185,457 + Xcc-8004.3284.1 0.24 -0.3
3,185,457 + Xcc-8004.3284.1 0.24 +0.4
3,185,457 + Xcc-8004.3284.1 0.24 +1.4
3,185,458 - Xcc-8004.3284.1 0.24 +0.1
3,185,458 - Xcc-8004.3284.1 0.24 -0.3
3,185,458 - Xcc-8004.3284.1 0.24 +0.1
3,185,458 - Xcc-8004.3284.1 0.24 +2.1
3,185,458 - Xcc-8004.3284.1 0.24 -0.1
3,185,486 + Xcc-8004.3284.1 0.27 +1.2
3,185,487 - Xcc-8004.3284.1 0.27 +0.4
3,185,623 - Xcc-8004.3284.1 0.41 -0.6
3,185,623 - Xcc-8004.3284.1 0.41 +0.4
3,185,724 + Xcc-8004.3284.1 0.51 -0.1
3,185,724 + Xcc-8004.3284.1 0.51 +0.5
3,185,724 + Xcc-8004.3284.1 0.51 -0.4
3,185,724 + Xcc-8004.3284.1 0.51 -1.4
3,185,724 + Xcc-8004.3284.1 0.51 +0.4
3,185,724 + Xcc-8004.3284.1 0.51 +0.3
3,185,724 + Xcc-8004.3284.1 0.51 +0.4
3,185,724 + Xcc-8004.3284.1 0.51 +0.1
3,185,724 + Xcc-8004.3284.1 0.51 +0.0
3,185,724 + Xcc-8004.3284.1 0.51 -0.0
3,185,724 + Xcc-8004.3284.1 0.51 +1.0
3,185,725 - Xcc-8004.3284.1 0.51 -1.1
3,185,725 - Xcc-8004.3284.1 0.51 -0.2
3,185,725 - Xcc-8004.3284.1 0.51 +0.1
3,185,725 - Xcc-8004.3284.1 0.51 +0.7
3,185,725 - Xcc-8004.3284.1 0.51 -0.5
3,185,725 - Xcc-8004.3284.1 0.51 -1.8
3,185,725 - Xcc-8004.3284.1 0.51 -0.7
3,185,725 - Xcc-8004.3284.1 0.51 -1.5
3,185,725 - Xcc-8004.3284.1 0.51 +0.2
3,185,725 - Xcc-8004.3284.1 0.51 -0.8
3,185,725 - Xcc-8004.3284.1 0.51 -0.3
3,185,735 + Xcc-8004.3284.1 0.53 -1.2
3,185,735 + Xcc-8004.3284.1 0.53 -0.8
3,185,735 + Xcc-8004.3284.1 0.53 -0.9
3,185,736 - Xcc-8004.3284.1 0.53 -0.7
3,185,736 - Xcc-8004.3284.1 0.53 -0.5
3,185,771 - Xcc-8004.3284.1 0.56 -1.9
3,185,771 - Xcc-8004.3284.1 0.56 +0.3
3,185,771 - Xcc-8004.3284.1 0.56 -0.3
3,185,919 + Xcc-8004.3284.1 0.72 -0.5
3,185,919 + Xcc-8004.3284.1 0.72 +0.0
3,185,920 - Xcc-8004.3284.1 0.72 -1.3
3,185,920 - Xcc-8004.3284.1 0.72 -0.5
3,185,920 - Xcc-8004.3284.1 0.72 +0.4
3,185,920 - Xcc-8004.3284.1 0.72 +0.9
3,186,010 - Xcc-8004.3284.1 0.81 -0.2

Or see this region's nucleotide sequence