Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3282.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3281.1 and Xcc-8004.3282.1 are separated by 115 nucleotidesXcc-8004.3282.1 and Xcc-8004.3283.1 are separated by 66 nucleotides Xcc-8004.3281.1: Xcc-8004.3281.1 - 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19), at 3,181,264 to 3,182,580 Xcc-8004.3281.1 Xcc-8004.3282.1: Xcc-8004.3282.1 - Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51), at 3,182,696 to 3,183,898 Xcc-8004.3282.1 Xcc-8004.3283.1: Xcc-8004.3283.1 - Phosphoserine aminotransferase (EC 2.6.1.52), at 3,183,965 to 3,185,050 Xcc-8004.3283.1 Position (kb) 3182 3183 3184Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3181.795 kb on + strand, within Xcc-8004.3281.1at 3181.840 kb on + strand, within Xcc-8004.3281.1at 3182.027 kb on + strand, within Xcc-8004.3281.1at 3182.027 kb on + strand, within Xcc-8004.3281.1at 3182.027 kb on + strand, within Xcc-8004.3281.1at 3182.028 kb on - strand, within Xcc-8004.3281.1at 3182.028 kb on - strand, within Xcc-8004.3281.1at 3182.028 kb on - strand, within Xcc-8004.3281.1at 3182.028 kb on - strand, within Xcc-8004.3281.1at 3182.029 kb on + strand, within Xcc-8004.3281.1at 3182.088 kb on + strand, within Xcc-8004.3281.1at 3182.088 kb on + strand, within Xcc-8004.3281.1at 3182.088 kb on + strand, within Xcc-8004.3281.1at 3182.089 kb on - strand, within Xcc-8004.3281.1at 3182.089 kb on - strand, within Xcc-8004.3281.1at 3182.089 kb on - strand, within Xcc-8004.3281.1at 3182.154 kb on + strand, within Xcc-8004.3281.1at 3182.155 kb on - strand, within Xcc-8004.3281.1at 3182.644 kb on + strandat 3182.809 kb on + strandat 3182.820 kb on + strand, within Xcc-8004.3282.1at 3182.821 kb on - strand, within Xcc-8004.3282.1at 3182.897 kb on + strand, within Xcc-8004.3282.1at 3182.897 kb on + strand, within Xcc-8004.3282.1at 3182.897 kb on + strand, within Xcc-8004.3282.1at 3182.898 kb on - strand, within Xcc-8004.3282.1at 3182.898 kb on - strand, within Xcc-8004.3282.1at 3182.898 kb on - strand, within Xcc-8004.3282.1at 3182.898 kb on - strand, within Xcc-8004.3282.1at 3183.054 kb on + strand, within Xcc-8004.3282.1at 3183.055 kb on - strand, within Xcc-8004.3282.1at 3183.055 kb on - strand, within Xcc-8004.3282.1at 3183.055 kb on - strand, within Xcc-8004.3282.1at 3183.055 kb on - strand, within Xcc-8004.3282.1at 3183.103 kb on + strand, within Xcc-8004.3282.1at 3183.104 kb on - strand, within Xcc-8004.3282.1at 3183.104 kb on - strand, within Xcc-8004.3282.1at 3183.213 kb on + strand, within Xcc-8004.3282.1at 3183.213 kb on + strand, within Xcc-8004.3282.1at 3183.214 kb on - strand, within Xcc-8004.3282.1at 3183.214 kb on - strand, within Xcc-8004.3282.1at 3183.259 kb on - strand, within Xcc-8004.3282.1at 3183.259 kb on - strand, within Xcc-8004.3282.1at 3183.259 kb on - strand, within Xcc-8004.3282.1at 3183.642 kb on + strand, within Xcc-8004.3282.1at 3183.642 kb on + strand, within Xcc-8004.3282.1at 3183.643 kb on - strand, within Xcc-8004.3282.1at 3183.643 kb on - strand, within Xcc-8004.3282.1at 3183.643 kb on - strand, within Xcc-8004.3282.1at 3183.643 kb on - strand, within Xcc-8004.3282.1at 3183.844 kb on + strandat 3183.917 kb on + strandat 3183.918 kb on - strandat 3183.918 kb on - strandat 3184.038 kb on + strandat 3184.038 kb on + strandat 3184.038 kb on + strandat 3184.039 kb on - strandat 3184.197 kb on + strand, within Xcc-8004.3283.1at 3184.227 kb on + strand, within Xcc-8004.3283.1at 3184.318 kb on - strand, within Xcc-8004.3283.1at 3184.318 kb on - strand, within Xcc-8004.3283.1at 3184.318 kb on - strand, within Xcc-8004.3283.1at 3184.330 kb on + strand, within Xcc-8004.3283.1at 3184.348 kb on + strand, within Xcc-8004.3283.1at 3184.348 kb on + strand, within Xcc-8004.3283.1at 3184.348 kb on + strand, within Xcc-8004.3283.1at 3184.349 kb on - strand, within Xcc-8004.3283.1at 3184.349 kb on - strand, within Xcc-8004.3283.1at 3184.375 kb on - strand, within Xcc-8004.3283.1at 3184.375 kb on - strand, within Xcc-8004.3283.1at 3184.375 kb on - strand, within Xcc-8004.3283.1at 3184.445 kb on - strand, within Xcc-8004.3283.1at 3184.479 kb on + strand, within Xcc-8004.3283.1at 3184.479 kb on + strand, within Xcc-8004.3283.1at 3184.479 kb on + strand, within Xcc-8004.3283.1at 3184.479 kb on + strand, within Xcc-8004.3283.1at 3184.479 kb on + strand, within Xcc-8004.3283.1at 3184.479 kb on + strand, within Xcc-8004.3283.1at 3184.480 kb on - strand, within Xcc-8004.3283.1at 3184.491 kb on + strand, within Xcc-8004.3283.1at 3184.671 kb on + strand, within Xcc-8004.3283.1at 3184.671 kb on + strand, within Xcc-8004.3283.1at 3184.671 kb on + strand, within Xcc-8004.3283.1at 3184.672 kb on - strand, within Xcc-8004.3283.1at 3184.713 kb on + strand, within Xcc-8004.3283.1at 3184.713 kb on + strand, within Xcc-8004.3283.1at 3184.713 kb on + strand, within Xcc-8004.3283.1at 3184.713 kb on + strand, within Xcc-8004.3283.1at 3184.713 kb on + strand, within Xcc-8004.3283.1at 3184.713 kb on + strand, within Xcc-8004.3283.1at 3184.714 kb on - strand, within Xcc-8004.3283.1at 3184.714 kb on - strand, within Xcc-8004.3283.1at 3184.714 kb on - strand, within Xcc-8004.3283.1at 3184.714 kb on - strand, within Xcc-8004.3283.1at 3184.764 kb on + strand, within Xcc-8004.3283.1at 3184.764 kb on + strand, within Xcc-8004.3283.1at 3184.765 kb on - strand, within Xcc-8004.3283.1at 3184.765 kb on - strand, within Xcc-8004.3283.1at 3184.765 kb on - strand, within Xcc-8004.3283.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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3,181,795 + Xcc-8004.3281.1 0.40 +0.7
3,181,840 + Xcc-8004.3281.1 0.44 -2.0
3,182,027 + Xcc-8004.3281.1 0.58 -2.8
3,182,027 + Xcc-8004.3281.1 0.58 -0.7
3,182,027 + Xcc-8004.3281.1 0.58 -0.6
3,182,028 - Xcc-8004.3281.1 0.58 -2.8
3,182,028 - Xcc-8004.3281.1 0.58 -2.0
3,182,028 - Xcc-8004.3281.1 0.58 -2.1
3,182,028 - Xcc-8004.3281.1 0.58 -2.5
3,182,029 + Xcc-8004.3281.1 0.58 -1.8
3,182,088 + Xcc-8004.3281.1 0.63 -1.4
3,182,088 + Xcc-8004.3281.1 0.63 -2.3
3,182,088 + Xcc-8004.3281.1 0.63 -2.5
3,182,089 - Xcc-8004.3281.1 0.63 -0.8
3,182,089 - Xcc-8004.3281.1 0.63 -1.1
3,182,089 - Xcc-8004.3281.1 0.63 -2.6
3,182,154 + Xcc-8004.3281.1 0.68 -1.7
3,182,155 - Xcc-8004.3281.1 0.68 -2.8
3,182,644 + -0.4
3,182,809 + -2.7
3,182,820 + Xcc-8004.3282.1 0.10 -1.3
3,182,821 - Xcc-8004.3282.1 0.10 -1.5
3,182,897 + Xcc-8004.3282.1 0.17 -0.6
3,182,897 + Xcc-8004.3282.1 0.17 -1.1
3,182,897 + Xcc-8004.3282.1 0.17 +0.3
3,182,898 - Xcc-8004.3282.1 0.17 -0.6
3,182,898 - Xcc-8004.3282.1 0.17 -0.8
3,182,898 - Xcc-8004.3282.1 0.17 -3.8
3,182,898 - Xcc-8004.3282.1 0.17 -1.3
3,183,054 + Xcc-8004.3282.1 0.30 +0.7
3,183,055 - Xcc-8004.3282.1 0.30 -2.1
3,183,055 - Xcc-8004.3282.1 0.30 +0.2
3,183,055 - Xcc-8004.3282.1 0.30 -2.2
3,183,055 - Xcc-8004.3282.1 0.30 +0.5
3,183,103 + Xcc-8004.3282.1 0.34 -1.6
3,183,104 - Xcc-8004.3282.1 0.34 -1.2
3,183,104 - Xcc-8004.3282.1 0.34 -1.6
3,183,213 + Xcc-8004.3282.1 0.43 -3.3
3,183,213 + Xcc-8004.3282.1 0.43 -3.6
3,183,214 - Xcc-8004.3282.1 0.43 -1.4
3,183,214 - Xcc-8004.3282.1 0.43 -3.0
3,183,259 - Xcc-8004.3282.1 0.47 -1.5
3,183,259 - Xcc-8004.3282.1 0.47 -0.6
3,183,259 - Xcc-8004.3282.1 0.47 -2.0
3,183,642 + Xcc-8004.3282.1 0.79 -1.3
3,183,642 + Xcc-8004.3282.1 0.79 -3.5
3,183,643 - Xcc-8004.3282.1 0.79 -2.0
3,183,643 - Xcc-8004.3282.1 0.79 -3.2
3,183,643 - Xcc-8004.3282.1 0.79 -1.7
3,183,643 - Xcc-8004.3282.1 0.79 -2.4
3,183,844 + -3.0
3,183,917 + -1.1
3,183,918 - -1.7
3,183,918 - -1.7
3,184,038 + -1.3
3,184,038 + -2.2
3,184,038 + -0.5
3,184,039 - -2.1
3,184,197 + Xcc-8004.3283.1 0.21 -1.1
3,184,227 + Xcc-8004.3283.1 0.24 -0.8
3,184,318 - Xcc-8004.3283.1 0.33 -2.5
3,184,318 - Xcc-8004.3283.1 0.33 +0.0
3,184,318 - Xcc-8004.3283.1 0.33 -0.6
3,184,330 + Xcc-8004.3283.1 0.34 -3.7
3,184,348 + Xcc-8004.3283.1 0.35 -1.3
3,184,348 + Xcc-8004.3283.1 0.35 +0.6
3,184,348 + Xcc-8004.3283.1 0.35 -1.3
3,184,349 - Xcc-8004.3283.1 0.35 -2.3
3,184,349 - Xcc-8004.3283.1 0.35 -4.3
3,184,375 - Xcc-8004.3283.1 0.38 -2.6
3,184,375 - Xcc-8004.3283.1 0.38 -1.0
3,184,375 - Xcc-8004.3283.1 0.38 -1.0
3,184,445 - Xcc-8004.3283.1 0.44 -1.1
3,184,479 + Xcc-8004.3283.1 0.47 -2.8
3,184,479 + Xcc-8004.3283.1 0.47 -1.8
3,184,479 + Xcc-8004.3283.1 0.47 -2.3
3,184,479 + Xcc-8004.3283.1 0.47 -3.0
3,184,479 + Xcc-8004.3283.1 0.47 -4.1
3,184,479 + Xcc-8004.3283.1 0.47 -2.5
3,184,480 - Xcc-8004.3283.1 0.47 -3.3
3,184,491 + Xcc-8004.3283.1 0.48 -2.0
3,184,671 + Xcc-8004.3283.1 0.65 -1.8
3,184,671 + Xcc-8004.3283.1 0.65 -3.0
3,184,671 + Xcc-8004.3283.1 0.65 -3.8
3,184,672 - Xcc-8004.3283.1 0.65 -2.0
3,184,713 + Xcc-8004.3283.1 0.69 -2.6
3,184,713 + Xcc-8004.3283.1 0.69 -2.6
3,184,713 + Xcc-8004.3283.1 0.69 -2.3
3,184,713 + Xcc-8004.3283.1 0.69 -2.6
3,184,713 + Xcc-8004.3283.1 0.69 -3.0
3,184,713 + Xcc-8004.3283.1 0.69 -3.3
3,184,714 - Xcc-8004.3283.1 0.69 -4.8
3,184,714 - Xcc-8004.3283.1 0.69 -2.8
3,184,714 - Xcc-8004.3283.1 0.69 -0.3
3,184,714 - Xcc-8004.3283.1 0.69 -1.4
3,184,764 + Xcc-8004.3283.1 0.74 -2.6
3,184,764 + Xcc-8004.3283.1 0.74 -3.2
3,184,765 - Xcc-8004.3283.1 0.74 -2.7
3,184,765 - Xcc-8004.3283.1 0.74 -3.0
3,184,765 - Xcc-8004.3283.1 0.74 -2.7

Or see this region's nucleotide sequence