Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3281.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3278.1 and Xcc-8004.3280.1 are separated by 113 nucleotidesXcc-8004.3280.1 and Xcc-8004.3281.1 overlap by 17 nucleotidesXcc-8004.3281.1 and Xcc-8004.3282.1 are separated by 115 nucleotides Xcc-8004.3278.1: Xcc-8004.3278.1 - Ferric siderophore transport system, periplasmic binding protein TonB, at 3,179,854 to 3,180,603 Xcc-8004.3278.1 Xcc-8004.3280.1: Xcc-8004.3280.1 - Ferric siderophore transport system, periplasmic binding protein TonB, at 3,180,717 to 3,181,280 Xcc-8004.3280.1 Xcc-8004.3281.1: Xcc-8004.3281.1 - 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19), at 3,181,264 to 3,182,580 Xcc-8004.3281.1 Xcc-8004.3282.1: Xcc-8004.3282.1 - Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51), at 3,182,696 to 3,183,898 Xcc-8004.3282.1 Position (kb) 3181 3182 3183Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3180.601 kb on + strandat 3180.649 kb on + strandat 3180.649 kb on + strandat 3180.649 kb on + strandat 3180.649 kb on + strandat 3180.649 kb on + strandat 3180.650 kb on - strandat 3180.650 kb on - strandat 3180.650 kb on - strandat 3180.878 kb on + strand, within Xcc-8004.3280.1at 3180.879 kb on - strand, within Xcc-8004.3280.1at 3181.037 kb on + strand, within Xcc-8004.3280.1at 3181.037 kb on + strand, within Xcc-8004.3280.1at 3181.037 kb on + strand, within Xcc-8004.3280.1at 3181.037 kb on + strand, within Xcc-8004.3280.1at 3181.037 kb on + strand, within Xcc-8004.3280.1at 3181.037 kb on + strand, within Xcc-8004.3280.1at 3181.037 kb on + strand, within Xcc-8004.3280.1at 3181.037 kb on + strand, within Xcc-8004.3280.1at 3181.037 kb on + strand, within Xcc-8004.3280.1at 3181.037 kb on + strand, within Xcc-8004.3280.1at 3181.037 kb on + strand, within Xcc-8004.3280.1at 3181.038 kb on - strand, within Xcc-8004.3280.1at 3181.038 kb on - strand, within Xcc-8004.3280.1at 3181.038 kb on - strand, within Xcc-8004.3280.1at 3181.038 kb on - strand, within Xcc-8004.3280.1at 3181.038 kb on - strand, within Xcc-8004.3280.1at 3181.038 kb on - strand, within Xcc-8004.3280.1at 3181.038 kb on - strand, within Xcc-8004.3280.1at 3181.038 kb on - strand, within Xcc-8004.3280.1at 3181.038 kb on - strand, within Xcc-8004.3280.1at 3181.038 kb on - strand, within Xcc-8004.3280.1at 3181.038 kb on - strand, within Xcc-8004.3280.1at 3181.038 kb on - strand, within Xcc-8004.3280.1at 3181.041 kb on + strand, within Xcc-8004.3280.1at 3181.042 kb on - strand, within Xcc-8004.3280.1at 3181.042 kb on - strand, within Xcc-8004.3280.1at 3181.042 kb on - strand, within Xcc-8004.3280.1at 3181.105 kb on + strand, within Xcc-8004.3280.1at 3181.105 kb on + strand, within Xcc-8004.3280.1at 3181.105 kb on + strand, within Xcc-8004.3280.1at 3181.105 kb on + strand, within Xcc-8004.3280.1at 3181.105 kb on + strand, within Xcc-8004.3280.1at 3181.105 kb on + strand, within Xcc-8004.3280.1at 3181.105 kb on + strand, within Xcc-8004.3280.1at 3181.105 kb on + strand, within Xcc-8004.3280.1at 3181.105 kb on + strand, within Xcc-8004.3280.1at 3181.106 kb on - strand, within Xcc-8004.3280.1at 3181.106 kb on - strand, within Xcc-8004.3280.1at 3181.106 kb on - strand, within Xcc-8004.3280.1at 3181.106 kb on - strand, within Xcc-8004.3280.1at 3181.106 kb on - strand, within Xcc-8004.3280.1at 3181.106 kb on - strand, within Xcc-8004.3280.1at 3181.106 kb on - strand, within Xcc-8004.3280.1at 3181.106 kb on - strand, within Xcc-8004.3280.1at 3181.106 kb on - strand, within Xcc-8004.3280.1at 3181.106 kb on - strand, within Xcc-8004.3280.1at 3181.681 kb on + strand, within Xcc-8004.3281.1at 3181.682 kb on - strand, within Xcc-8004.3281.1at 3181.682 kb on - strand, within Xcc-8004.3281.1at 3181.795 kb on + strand, within Xcc-8004.3281.1at 3181.840 kb on + strand, within Xcc-8004.3281.1at 3182.027 kb on + strand, within Xcc-8004.3281.1at 3182.027 kb on + strand, within Xcc-8004.3281.1at 3182.027 kb on + strand, within Xcc-8004.3281.1at 3182.028 kb on - strand, within Xcc-8004.3281.1at 3182.028 kb on - strand, within Xcc-8004.3281.1at 3182.028 kb on - strand, within Xcc-8004.3281.1at 3182.028 kb on - strand, within Xcc-8004.3281.1at 3182.029 kb on + strand, within Xcc-8004.3281.1at 3182.088 kb on + strand, within Xcc-8004.3281.1at 3182.088 kb on + strand, within Xcc-8004.3281.1at 3182.088 kb on + strand, within Xcc-8004.3281.1at 3182.089 kb on - strand, within Xcc-8004.3281.1at 3182.089 kb on - strand, within Xcc-8004.3281.1at 3182.089 kb on - strand, within Xcc-8004.3281.1at 3182.154 kb on + strand, within Xcc-8004.3281.1at 3182.155 kb on - strand, within Xcc-8004.3281.1at 3182.644 kb on + strandat 3182.809 kb on + strandat 3182.820 kb on + strand, within Xcc-8004.3282.1at 3182.821 kb on - strand, within Xcc-8004.3282.1at 3182.897 kb on + strand, within Xcc-8004.3282.1at 3182.897 kb on + strand, within Xcc-8004.3282.1at 3182.897 kb on + strand, within Xcc-8004.3282.1at 3182.898 kb on - strand, within Xcc-8004.3282.1at 3182.898 kb on - strand, within Xcc-8004.3282.1at 3182.898 kb on - strand, within Xcc-8004.3282.1at 3182.898 kb on - strand, within Xcc-8004.3282.1at 3183.054 kb on + strand, within Xcc-8004.3282.1at 3183.055 kb on - strand, within Xcc-8004.3282.1at 3183.055 kb on - strand, within Xcc-8004.3282.1at 3183.055 kb on - strand, within Xcc-8004.3282.1at 3183.055 kb on - strand, within Xcc-8004.3282.1at 3183.103 kb on + strand, within Xcc-8004.3282.1at 3183.104 kb on - strand, within Xcc-8004.3282.1at 3183.104 kb on - strand, within Xcc-8004.3282.1at 3183.213 kb on + strand, within Xcc-8004.3282.1at 3183.213 kb on + strand, within Xcc-8004.3282.1at 3183.214 kb on - strand, within Xcc-8004.3282.1at 3183.214 kb on - strand, within Xcc-8004.3282.1at 3183.259 kb on - strand, within Xcc-8004.3282.1at 3183.259 kb on - strand, within Xcc-8004.3282.1at 3183.259 kb on - strand, within Xcc-8004.3282.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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3,180,601 + +0.0
3,180,649 + +1.0
3,180,649 + -0.5
3,180,649 + -1.2
3,180,649 + +0.3
3,180,649 + +0.2
3,180,650 - -1.3
3,180,650 - +0.2
3,180,650 - -0.9
3,180,878 + Xcc-8004.3280.1 0.29 +0.5
3,180,879 - Xcc-8004.3280.1 0.29 -1.1
3,181,037 + Xcc-8004.3280.1 0.57 -0.4
3,181,037 + Xcc-8004.3280.1 0.57 -0.7
3,181,037 + Xcc-8004.3280.1 0.57 -0.1
3,181,037 + Xcc-8004.3280.1 0.57 -0.5
3,181,037 + Xcc-8004.3280.1 0.57 -0.7
3,181,037 + Xcc-8004.3280.1 0.57 +0.2
3,181,037 + Xcc-8004.3280.1 0.57 -0.1
3,181,037 + Xcc-8004.3280.1 0.57 -0.3
3,181,037 + Xcc-8004.3280.1 0.57 +0.1
3,181,037 + Xcc-8004.3280.1 0.57 -0.3
3,181,037 + Xcc-8004.3280.1 0.57 -0.2
3,181,038 - Xcc-8004.3280.1 0.57 -0.0
3,181,038 - Xcc-8004.3280.1 0.57 -0.5
3,181,038 - Xcc-8004.3280.1 0.57 -0.9
3,181,038 - Xcc-8004.3280.1 0.57 +1.1
3,181,038 - Xcc-8004.3280.1 0.57 +0.4
3,181,038 - Xcc-8004.3280.1 0.57 -0.2
3,181,038 - Xcc-8004.3280.1 0.57 +0.9
3,181,038 - Xcc-8004.3280.1 0.57 -1.0
3,181,038 - Xcc-8004.3280.1 0.57 -0.8
3,181,038 - Xcc-8004.3280.1 0.57 -0.1
3,181,038 - Xcc-8004.3280.1 0.57 -0.7
3,181,038 - Xcc-8004.3280.1 0.57 -0.5
3,181,041 + Xcc-8004.3280.1 0.57 -0.7
3,181,042 - Xcc-8004.3280.1 0.58 -1.0
3,181,042 - Xcc-8004.3280.1 0.58 -0.6
3,181,042 - Xcc-8004.3280.1 0.58 +0.1
3,181,105 + Xcc-8004.3280.1 0.69 +0.3
3,181,105 + Xcc-8004.3280.1 0.69 +0.5
3,181,105 + Xcc-8004.3280.1 0.69 -0.5
3,181,105 + Xcc-8004.3280.1 0.69 -0.4
3,181,105 + Xcc-8004.3280.1 0.69 -0.9
3,181,105 + Xcc-8004.3280.1 0.69 +2.0
3,181,105 + Xcc-8004.3280.1 0.69 -1.1
3,181,105 + Xcc-8004.3280.1 0.69 -0.7
3,181,105 + Xcc-8004.3280.1 0.69 +0.4
3,181,106 - Xcc-8004.3280.1 0.69 +0.0
3,181,106 - Xcc-8004.3280.1 0.69 +0.2
3,181,106 - Xcc-8004.3280.1 0.69 -0.0
3,181,106 - Xcc-8004.3280.1 0.69 -0.0
3,181,106 - Xcc-8004.3280.1 0.69 -0.8
3,181,106 - Xcc-8004.3280.1 0.69 +0.1
3,181,106 - Xcc-8004.3280.1 0.69 -1.4
3,181,106 - Xcc-8004.3280.1 0.69 -0.1
3,181,106 - Xcc-8004.3280.1 0.69 +0.2
3,181,106 - Xcc-8004.3280.1 0.69 -0.7
3,181,681 + Xcc-8004.3281.1 0.32 -1.7
3,181,682 - Xcc-8004.3281.1 0.32 +0.7
3,181,682 - Xcc-8004.3281.1 0.32 -0.3
3,181,795 + Xcc-8004.3281.1 0.40 +0.7
3,181,840 + Xcc-8004.3281.1 0.44 -2.0
3,182,027 + Xcc-8004.3281.1 0.58 -2.8
3,182,027 + Xcc-8004.3281.1 0.58 -0.7
3,182,027 + Xcc-8004.3281.1 0.58 -0.6
3,182,028 - Xcc-8004.3281.1 0.58 -2.8
3,182,028 - Xcc-8004.3281.1 0.58 -2.0
3,182,028 - Xcc-8004.3281.1 0.58 -2.1
3,182,028 - Xcc-8004.3281.1 0.58 -2.5
3,182,029 + Xcc-8004.3281.1 0.58 -1.8
3,182,088 + Xcc-8004.3281.1 0.63 -1.4
3,182,088 + Xcc-8004.3281.1 0.63 -2.3
3,182,088 + Xcc-8004.3281.1 0.63 -2.5
3,182,089 - Xcc-8004.3281.1 0.63 -0.8
3,182,089 - Xcc-8004.3281.1 0.63 -1.1
3,182,089 - Xcc-8004.3281.1 0.63 -2.6
3,182,154 + Xcc-8004.3281.1 0.68 -1.7
3,182,155 - Xcc-8004.3281.1 0.68 -2.8
3,182,644 + -0.4
3,182,809 + -2.7
3,182,820 + Xcc-8004.3282.1 0.10 -1.3
3,182,821 - Xcc-8004.3282.1 0.10 -1.5
3,182,897 + Xcc-8004.3282.1 0.17 -0.6
3,182,897 + Xcc-8004.3282.1 0.17 -1.1
3,182,897 + Xcc-8004.3282.1 0.17 +0.3
3,182,898 - Xcc-8004.3282.1 0.17 -0.6
3,182,898 - Xcc-8004.3282.1 0.17 -0.8
3,182,898 - Xcc-8004.3282.1 0.17 -3.8
3,182,898 - Xcc-8004.3282.1 0.17 -1.3
3,183,054 + Xcc-8004.3282.1 0.30 +0.7
3,183,055 - Xcc-8004.3282.1 0.30 -2.1
3,183,055 - Xcc-8004.3282.1 0.30 +0.2
3,183,055 - Xcc-8004.3282.1 0.30 -2.2
3,183,055 - Xcc-8004.3282.1 0.30 +0.5
3,183,103 + Xcc-8004.3282.1 0.34 -1.6
3,183,104 - Xcc-8004.3282.1 0.34 -1.2
3,183,104 - Xcc-8004.3282.1 0.34 -1.6
3,183,213 + Xcc-8004.3282.1 0.43 -3.3
3,183,213 + Xcc-8004.3282.1 0.43 -3.6
3,183,214 - Xcc-8004.3282.1 0.43 -1.4
3,183,214 - Xcc-8004.3282.1 0.43 -3.0
3,183,259 - Xcc-8004.3282.1 0.47 -1.5
3,183,259 - Xcc-8004.3282.1 0.47 -0.6
3,183,259 - Xcc-8004.3282.1 0.47 -2.0

Or see this region's nucleotide sequence