Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3222.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
3,132,894	+		Xcc-8004.3222.1	0.89	-0.5
3,132,894	+		Xcc-8004.3222.1	0.89	+0.3
3,132,894	+		Xcc-8004.3222.1	0.89	-1.4
3,132,894	+		Xcc-8004.3222.1	0.89	-0.1
3,132,922	+				-1.4
3,132,923	-				-0.1
3,133,041	+		Xcc-8004.3223.1	0.47	-0.7
3,133,041	+		Xcc-8004.3223.1	0.47	-1.5
3,133,041	+		Xcc-8004.3223.1	0.47	+1.2
3,133,041	+		Xcc-8004.3223.1	0.47	-1.0
3,133,041	+		Xcc-8004.3223.1	0.47	-0.6
3,133,041	+		Xcc-8004.3223.1	0.47	+0.5
3,133,042	-		Xcc-8004.3223.1	0.48	-0.5
3,133,042	-		Xcc-8004.3223.1	0.48	-0.5
3,133,042	-		Xcc-8004.3223.1	0.48	+0.6
3,133,042	-		Xcc-8004.3223.1	0.48	-1.0
3,133,042	-		Xcc-8004.3223.1	0.48	+0.3
3,133,109	+		Xcc-8004.3223.1	0.79	-1.3
3,133,109	+		Xcc-8004.3223.1	0.79	-0.5
3,133,109	+		Xcc-8004.3223.1	0.79	-0.4
3,133,109	+		Xcc-8004.3223.1	0.79	-0.6
3,133,110	-		Xcc-8004.3223.1	0.80	+0.0
3,133,110	-		Xcc-8004.3223.1	0.80	-0.1
3,133,139	+				+0.5
3,133,139	+				-1.2
3,133,139	+				+0.1
3,133,139	+				-0.6
3,133,140	-				-0.4
3,133,140	-				-0.1
3,133,140	-				+0.3
3,133,140	-				-0.2
3,133,140	-				+0.7
3,133,286	+				+0.6
3,133,287	-				+1.0
3,133,287	-				-1.1
3,133,413	+				-0.8
3,133,413	+				-0.3
3,133,413	+				+0.0
3,133,413	+				+0.3
3,133,413	+				-0.6
3,133,413	+				-0.6
3,133,413	+				-1.5
3,133,413	+				+0.7
3,133,413	+				-0.2
3,133,414	-				+0.9
3,133,414	-				-0.1
3,133,414	-				-0.2
3,133,414	-				-0.3
3,133,414	-				-0.2
3,133,414	-				+0.4
3,133,619	+		Xcc-8004.3224.1	0.14	-0.2
3,133,849	+		Xcc-8004.3224.1	0.21	-0.1
3,133,849	+		Xcc-8004.3224.1	0.21	-0.1
3,133,850	-		Xcc-8004.3224.1	0.21	+0.7
3,133,850	-		Xcc-8004.3224.1	0.21	+0.2
3,133,850	-		Xcc-8004.3224.1	0.21	-0.2
3,133,850	-		Xcc-8004.3224.1	0.21	+0.2
3,133,850	-		Xcc-8004.3224.1	0.21	-0.3
3,133,874	-		Xcc-8004.3224.1	0.22	+0.2
3,133,903	+		Xcc-8004.3224.1	0.23	+0.5
3,133,903	+		Xcc-8004.3224.1	0.23	-2.0
3,133,904	-		Xcc-8004.3224.1	0.23	+0.0