Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3220.1

Experiment: Pectin from apple 2 g/L (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.3216.1 and Xcc-8004.3217.1 overlap by 31 nucleotidesXcc-8004.3217.1 and Xcc-8004.3218.1 overlap by 53 nucleotidesXcc-8004.3218.1 and Xcc-8004.3219.1 are separated by 48 nucleotidesXcc-8004.3219.1 and Xcc-8004.3220.1 overlap by 187 nucleotidesXcc-8004.3220.1 and Xcc-8004.3221.1 are separated by 29 nucleotidesXcc-8004.3221.1 and Xcc-8004.3222.1 are separated by 14 nucleotidesXcc-8004.3222.1 and Xcc-8004.3223.1 are separated by 26 nucleotidesXcc-8004.3223.1 and Xcc-8004.3224.1 are separated by 50 nucleotides Xcc-8004.3216.1: Xcc-8004.3216.1 - protein of unknown function DUF88, at 3,130,655 to 3,130,939 Xcc-8004.3216.1 Xcc-8004.3217.1: Xcc-8004.3217.1 - Mobile element protein, at 3,130,909 to 3,131,289 Xcc-8004.3217.1 Xcc-8004.3218.1: Xcc-8004.3218.1 - Mobile element protein, at 3,131,237 to 3,131,389 Xcc-8004.3218.1 Xcc-8004.3219.1: Xcc-8004.3219.1 - Mobile element protein, at 3,131,438 to 3,131,701 Xcc-8004.3219.1 Xcc-8004.3220.1: Xcc-8004.3220.1 - Mobile element protein, at 3,131,515 to 3,132,516 Xcc-8004.3220.1 Xcc-8004.3221.1: Xcc-8004.3221.1 - Mobile element protein, at 3,132,546 to 3,132,713 Xcc-8004.3221.1 Xcc-8004.3222.1: Xcc-8004.3222.1 - Mobile element protein, at 3,132,728 to 3,132,913 Xcc-8004.3222.1 Xcc-8004.3223.1: Xcc-8004.3223.1 - phage-related integrase, at 3,132,940 to 3,133,152 Xcc-8004.3223.1 Xcc-8004.3224.1: Xcc-8004.3224.1 - Superfamily I DNA helicase, at 3,133,203 to 3,136,274 Xcc-8004.3224.1 Position (kb) 3131 3132 3133Strain fitness (log2 ratio) -1 0 1at 3130.865 kb on - strand, within Xcc-8004.3216.1at 3131.018 kb on - strand, within Xcc-8004.3217.1at 3132.894 kb on + strand, within Xcc-8004.3222.1at 3132.894 kb on + strand, within Xcc-8004.3222.1at 3132.894 kb on + strand, within Xcc-8004.3222.1at 3132.894 kb on + strand, within Xcc-8004.3222.1at 3132.922 kb on + strandat 3132.923 kb on - strandat 3133.041 kb on + strand, within Xcc-8004.3223.1at 3133.041 kb on + strand, within Xcc-8004.3223.1at 3133.041 kb on + strand, within Xcc-8004.3223.1at 3133.041 kb on + strand, within Xcc-8004.3223.1at 3133.041 kb on + strand, within Xcc-8004.3223.1at 3133.041 kb on + strand, within Xcc-8004.3223.1at 3133.042 kb on - strand, within Xcc-8004.3223.1at 3133.042 kb on - strand, within Xcc-8004.3223.1at 3133.042 kb on - strand, within Xcc-8004.3223.1at 3133.042 kb on - strand, within Xcc-8004.3223.1at 3133.042 kb on - strand, within Xcc-8004.3223.1at 3133.109 kb on + strand, within Xcc-8004.3223.1at 3133.109 kb on + strand, within Xcc-8004.3223.1at 3133.109 kb on + strand, within Xcc-8004.3223.1at 3133.109 kb on + strand, within Xcc-8004.3223.1at 3133.110 kb on - strand, within Xcc-8004.3223.1at 3133.110 kb on - strand, within Xcc-8004.3223.1at 3133.139 kb on + strandat 3133.139 kb on + strandat 3133.139 kb on + strandat 3133.139 kb on + strandat 3133.140 kb on - strandat 3133.140 kb on - strandat 3133.140 kb on - strandat 3133.140 kb on - strandat 3133.140 kb on - strandat 3133.286 kb on + strandat 3133.287 kb on - strandat 3133.287 kb on - strandat 3133.413 kb on + strandat 3133.413 kb on + strandat 3133.413 kb on + strandat 3133.413 kb on + strandat 3133.413 kb on + strandat 3133.413 kb on + strandat 3133.413 kb on + strandat 3133.413 kb on + strandat 3133.413 kb on + strandat 3133.414 kb on - strandat 3133.414 kb on - strandat 3133.414 kb on - strandat 3133.414 kb on - strandat 3133.414 kb on - strandat 3133.414 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
remove
3,130,865 - Xcc-8004.3216.1 0.74 -0.1
3,131,018 - Xcc-8004.3217.1 0.29 +1.0
3,132,894 + Xcc-8004.3222.1 0.89 -0.5
3,132,894 + Xcc-8004.3222.1 0.89 +0.3
3,132,894 + Xcc-8004.3222.1 0.89 -1.4
3,132,894 + Xcc-8004.3222.1 0.89 -0.1
3,132,922 + -1.4
3,132,923 - -0.1
3,133,041 + Xcc-8004.3223.1 0.47 -0.7
3,133,041 + Xcc-8004.3223.1 0.47 -1.5
3,133,041 + Xcc-8004.3223.1 0.47 +1.2
3,133,041 + Xcc-8004.3223.1 0.47 -1.0
3,133,041 + Xcc-8004.3223.1 0.47 -0.6
3,133,041 + Xcc-8004.3223.1 0.47 +0.5
3,133,042 - Xcc-8004.3223.1 0.48 -0.5
3,133,042 - Xcc-8004.3223.1 0.48 -0.5
3,133,042 - Xcc-8004.3223.1 0.48 +0.6
3,133,042 - Xcc-8004.3223.1 0.48 -1.0
3,133,042 - Xcc-8004.3223.1 0.48 +0.3
3,133,109 + Xcc-8004.3223.1 0.79 -1.3
3,133,109 + Xcc-8004.3223.1 0.79 -0.5
3,133,109 + Xcc-8004.3223.1 0.79 -0.4
3,133,109 + Xcc-8004.3223.1 0.79 -0.6
3,133,110 - Xcc-8004.3223.1 0.80 +0.0
3,133,110 - Xcc-8004.3223.1 0.80 -0.1
3,133,139 + +0.5
3,133,139 + -1.2
3,133,139 + +0.1
3,133,139 + -0.6
3,133,140 - -0.4
3,133,140 - -0.1
3,133,140 - +0.3
3,133,140 - -0.2
3,133,140 - +0.7
3,133,286 + +0.6
3,133,287 - +1.0
3,133,287 - -1.1
3,133,413 + -0.8
3,133,413 + -0.3
3,133,413 + +0.0
3,133,413 + +0.3
3,133,413 + -0.6
3,133,413 + -0.6
3,133,413 + -1.5
3,133,413 + +0.7
3,133,413 + -0.2
3,133,414 - +0.9
3,133,414 - -0.1
3,133,414 - -0.2
3,133,414 - -0.3
3,133,414 - -0.2
3,133,414 - +0.4

Or see this region's nucleotide sequence