Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3079.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3077.1 and Xcc-8004.3078.1 are separated by 130 nucleotidesXcc-8004.3078.1 and Xcc-8004.3079.1 overlap by 20 nucleotidesXcc-8004.3079.1 and Xcc-8004.3080.1 overlap by 4 nucleotides Xcc-8004.3077.1: Xcc-8004.3077.1 - Galactose-binding protein regulator, at 3,015,932 to 3,016,969 Xcc-8004.3077.1 Xcc-8004.3078.1: Xcc-8004.3078.1 - hypothetical protein, at 3,017,100 to 3,017,309 Xcc-8004.3078.1 Xcc-8004.3079.1: Xcc-8004.3079.1 - 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21), at 3,017,290 to 3,017,961 Xcc-8004.3079.1 Xcc-8004.3080.1: Xcc-8004.3080.1 - Galactonate dehydratase (EC 4.2.1.6), at 3,017,958 to 3,019,106 Xcc-8004.3080.1 Position (kb) 3017 3018Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3016.482 kb on + strand, within Xcc-8004.3077.1at 3016.482 kb on + strand, within Xcc-8004.3077.1at 3016.482 kb on + strand, within Xcc-8004.3077.1at 3016.482 kb on + strand, within Xcc-8004.3077.1at 3016.483 kb on - strand, within Xcc-8004.3077.1at 3016.483 kb on - strand, within Xcc-8004.3077.1at 3016.483 kb on - strand, within Xcc-8004.3077.1at 3016.483 kb on - strand, within Xcc-8004.3077.1at 3016.483 kb on - strand, within Xcc-8004.3077.1at 3016.686 kb on + strand, within Xcc-8004.3077.1at 3016.686 kb on + strand, within Xcc-8004.3077.1at 3016.724 kb on + strand, within Xcc-8004.3077.1at 3016.724 kb on + strand, within Xcc-8004.3077.1at 3016.724 kb on + strand, within Xcc-8004.3077.1at 3016.725 kb on - strand, within Xcc-8004.3077.1at 3016.725 kb on - strand, within Xcc-8004.3077.1at 3016.725 kb on - strand, within Xcc-8004.3077.1at 3016.725 kb on - strand, within Xcc-8004.3077.1at 3016.725 kb on - strand, within Xcc-8004.3077.1at 3016.725 kb on - strand, within Xcc-8004.3077.1at 3016.725 kb on - strand, within Xcc-8004.3077.1at 3016.888 kb on + strandat 3016.924 kb on + strandat 3016.924 kb on + strandat 3016.939 kb on + strandat 3016.940 kb on - strandat 3016.945 kb on - strandat 3016.971 kb on + strandat 3016.971 kb on + strandat 3016.971 kb on + strandat 3016.971 kb on + strandat 3016.971 kb on + strandat 3016.972 kb on - strandat 3016.972 kb on - strandat 3016.972 kb on - strandat 3017.014 kb on + strandat 3017.014 kb on + strandat 3017.014 kb on + strandat 3017.015 kb on - strandat 3017.015 kb on - strandat 3017.015 kb on - strandat 3017.297 kb on + strandat 3017.298 kb on - strandat 3017.307 kb on + strandat 3017.307 kb on + strandat 3017.308 kb on - strandat 3017.308 kb on - strandat 3017.510 kb on - strand, within Xcc-8004.3079.1at 3017.607 kb on + strand, within Xcc-8004.3079.1at 3017.607 kb on + strand, within Xcc-8004.3079.1at 3017.607 kb on + strand, within Xcc-8004.3079.1at 3017.608 kb on - strand, within Xcc-8004.3079.1at 3017.740 kb on + strand, within Xcc-8004.3079.1at 3017.740 kb on + strand, within Xcc-8004.3079.1at 3017.740 kb on + strand, within Xcc-8004.3079.1at 3017.740 kb on + strand, within Xcc-8004.3079.1at 3017.741 kb on - strand, within Xcc-8004.3079.1at 3017.741 kb on - strand, within Xcc-8004.3079.1at 3017.741 kb on - strand, within Xcc-8004.3079.1at 3017.741 kb on - strand, within Xcc-8004.3079.1at 3017.741 kb on - strand, within Xcc-8004.3079.1at 3017.741 kb on - strand, within Xcc-8004.3079.1at 3017.741 kb on - strand, within Xcc-8004.3079.1at 3017.741 kb on - strand, within Xcc-8004.3079.1at 3017.741 kb on - strand, within Xcc-8004.3079.1at 3017.741 kb on - strand, within Xcc-8004.3079.1at 3017.741 kb on - strand, within Xcc-8004.3079.1at 3017.741 kb on - strand, within Xcc-8004.3079.1at 3017.741 kb on - strand, within Xcc-8004.3079.1at 3017.741 kb on - strand, within Xcc-8004.3079.1at 3017.797 kb on + strand, within Xcc-8004.3079.1at 3017.798 kb on - strand, within Xcc-8004.3079.1at 3017.798 kb on - strand, within Xcc-8004.3079.1at 3017.798 kb on - strand, within Xcc-8004.3079.1at 3017.798 kb on - strand, within Xcc-8004.3079.1at 3017.798 kb on - strand, within Xcc-8004.3079.1at 3017.798 kb on - strand, within Xcc-8004.3079.1at 3017.798 kb on - strand, within Xcc-8004.3079.1at 3017.881 kb on + strand, within Xcc-8004.3079.1at 3017.881 kb on + strand, within Xcc-8004.3079.1at 3017.881 kb on + strand, within Xcc-8004.3079.1at 3017.881 kb on + strand, within Xcc-8004.3079.1at 3017.881 kb on + strand, within Xcc-8004.3079.1at 3017.882 kb on - strand, within Xcc-8004.3079.1at 3017.882 kb on - strand, within Xcc-8004.3079.1at 3017.882 kb on - strand, within Xcc-8004.3079.1at 3017.882 kb on - strand, within Xcc-8004.3079.1at 3017.941 kb on + strandat 3017.941 kb on + strandat 3017.941 kb on + strandat 3017.942 kb on - strandat 3017.982 kb on + strandat 3017.982 kb on + strandat 3017.982 kb on + strandat 3017.983 kb on - strandat 3017.983 kb on - strandat 3017.983 kb on - strandat 3017.983 kb on - strandat 3017.983 kb on - strandat 3017.983 kb on - strandat 3017.983 kb on - strandat 3017.983 kb on - strandat 3017.983 kb on - strandat 3018.108 kb on + strand, within Xcc-8004.3080.1at 3018.109 kb on - strand, within Xcc-8004.3080.1at 3018.109 kb on - strand, within Xcc-8004.3080.1at 3018.109 kb on - strand, within Xcc-8004.3080.1at 3018.159 kb on + strand, within Xcc-8004.3080.1at 3018.159 kb on + strand, within Xcc-8004.3080.1at 3018.159 kb on + strand, within Xcc-8004.3080.1at 3018.159 kb on + strand, within Xcc-8004.3080.1at 3018.159 kb on + strand, within Xcc-8004.3080.1at 3018.159 kb on + strand, within Xcc-8004.3080.1at 3018.160 kb on - strand, within Xcc-8004.3080.1at 3018.160 kb on - strand, within Xcc-8004.3080.1at 3018.160 kb on - strand, within Xcc-8004.3080.1at 3018.174 kb on + strand, within Xcc-8004.3080.1at 3018.175 kb on - strand, within Xcc-8004.3080.1at 3018.175 kb on - strand, within Xcc-8004.3080.1at 3018.188 kb on + strand, within Xcc-8004.3080.1at 3018.264 kb on + strand, within Xcc-8004.3080.1at 3018.264 kb on + strand, within Xcc-8004.3080.1at 3018.265 kb on - strand, within Xcc-8004.3080.1at 3018.265 kb on - strand, within Xcc-8004.3080.1at 3018.265 kb on - strand, within Xcc-8004.3080.1at 3018.265 kb on - strand, within Xcc-8004.3080.1at 3018.306 kb on + strand, within Xcc-8004.3080.1at 3018.306 kb on + strand, within Xcc-8004.3080.1at 3018.306 kb on + strand, within Xcc-8004.3080.1at 3018.306 kb on + strand, within Xcc-8004.3080.1at 3018.306 kb on + strand, within Xcc-8004.3080.1at 3018.307 kb on - strand, within Xcc-8004.3080.1at 3018.307 kb on - strand, within Xcc-8004.3080.1at 3018.307 kb on - strand, within Xcc-8004.3080.1at 3018.307 kb on - strand, within Xcc-8004.3080.1at 3018.307 kb on - strand, within Xcc-8004.3080.1at 3018.360 kb on + strand, within Xcc-8004.3080.1at 3018.485 kb on + strand, within Xcc-8004.3080.1at 3018.485 kb on + strand, within Xcc-8004.3080.1at 3018.485 kb on + strand, within Xcc-8004.3080.1at 3018.485 kb on + strand, within Xcc-8004.3080.1at 3018.485 kb on + strand, within Xcc-8004.3080.1at 3018.486 kb on - strand, within Xcc-8004.3080.1at 3018.486 kb on - strand, within Xcc-8004.3080.1at 3018.486 kb on - strand, within Xcc-8004.3080.1at 3018.486 kb on - strand, within Xcc-8004.3080.1at 3018.486 kb on - strand, within Xcc-8004.3080.1at 3018.612 kb on + strand, within Xcc-8004.3080.1at 3018.612 kb on + strand, within Xcc-8004.3080.1at 3018.612 kb on + strand, within Xcc-8004.3080.1at 3018.612 kb on + strand, within Xcc-8004.3080.1at 3018.612 kb on + strand, within Xcc-8004.3080.1at 3018.615 kb on + strand, within Xcc-8004.3080.1at 3018.615 kb on + strand, within Xcc-8004.3080.1at 3018.616 kb on - strand, within Xcc-8004.3080.1at 3018.616 kb on - strand, within Xcc-8004.3080.1at 3018.789 kb on + strand, within Xcc-8004.3080.1at 3018.789 kb on + strand, within Xcc-8004.3080.1at 3018.789 kb on + strand, within Xcc-8004.3080.1at 3018.789 kb on + strand, within Xcc-8004.3080.1at 3018.789 kb on + strand, within Xcc-8004.3080.1at 3018.789 kb on + strand, within Xcc-8004.3080.1at 3018.790 kb on - strand, within Xcc-8004.3080.1at 3018.790 kb on - strand, within Xcc-8004.3080.1at 3018.906 kb on + strand, within Xcc-8004.3080.1at 3018.907 kb on - strand, within Xcc-8004.3080.1at 3018.933 kb on + strand, within Xcc-8004.3080.1at 3018.933 kb on + strand, within Xcc-8004.3080.1at 3018.933 kb on + strand, within Xcc-8004.3080.1at 3018.934 kb on - strand, within Xcc-8004.3080.1at 3018.934 kb on - strand, within Xcc-8004.3080.1at 3018.934 kb on - strand, within Xcc-8004.3080.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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3,016,482 + Xcc-8004.3077.1 0.53 -0.4
3,016,482 + Xcc-8004.3077.1 0.53 +0.3
3,016,482 + Xcc-8004.3077.1 0.53 -0.9
3,016,482 + Xcc-8004.3077.1 0.53 -2.1
3,016,483 - Xcc-8004.3077.1 0.53 +0.3
3,016,483 - Xcc-8004.3077.1 0.53 -0.7
3,016,483 - Xcc-8004.3077.1 0.53 -0.3
3,016,483 - Xcc-8004.3077.1 0.53 +1.0
3,016,483 - Xcc-8004.3077.1 0.53 +0.3
3,016,686 + Xcc-8004.3077.1 0.73 +0.2
3,016,686 + Xcc-8004.3077.1 0.73 -0.1
3,016,724 + Xcc-8004.3077.1 0.76 -1.3
3,016,724 + Xcc-8004.3077.1 0.76 -1.3
3,016,724 + Xcc-8004.3077.1 0.76 -0.9
3,016,725 - Xcc-8004.3077.1 0.76 +0.7
3,016,725 - Xcc-8004.3077.1 0.76 +0.8
3,016,725 - Xcc-8004.3077.1 0.76 -0.4
3,016,725 - Xcc-8004.3077.1 0.76 -0.9
3,016,725 - Xcc-8004.3077.1 0.76 +0.0
3,016,725 - Xcc-8004.3077.1 0.76 +0.8
3,016,725 - Xcc-8004.3077.1 0.76 -0.6
3,016,888 + -1.0
3,016,924 + +0.3
3,016,924 + -0.2
3,016,939 + -0.3
3,016,940 - -0.0
3,016,945 - -1.7
3,016,971 + +0.7
3,016,971 + -1.4
3,016,971 + -0.8
3,016,971 + -1.7
3,016,971 + +0.1
3,016,972 - -1.7
3,016,972 - -2.1
3,016,972 - -2.8
3,017,014 + +0.5
3,017,014 + -1.6
3,017,014 + -0.9
3,017,015 - -1.9
3,017,015 - -0.2
3,017,015 - -2.4
3,017,297 + -0.5
3,017,298 - -0.7
3,017,307 + -1.0
3,017,307 + -0.6
3,017,308 - -0.5
3,017,308 - -1.1
3,017,510 - Xcc-8004.3079.1 0.33 -1.4
3,017,607 + Xcc-8004.3079.1 0.47 -0.6
3,017,607 + Xcc-8004.3079.1 0.47 +0.1
3,017,607 + Xcc-8004.3079.1 0.47 -1.3
3,017,608 - Xcc-8004.3079.1 0.47 -2.5
3,017,740 + Xcc-8004.3079.1 0.67 -3.4
3,017,740 + Xcc-8004.3079.1 0.67 -0.1
3,017,740 + Xcc-8004.3079.1 0.67 -1.5
3,017,740 + Xcc-8004.3079.1 0.67 -0.4
3,017,741 - Xcc-8004.3079.1 0.67 -0.9
3,017,741 - Xcc-8004.3079.1 0.67 -0.9
3,017,741 - Xcc-8004.3079.1 0.67 -1.2
3,017,741 - Xcc-8004.3079.1 0.67 -2.2
3,017,741 - Xcc-8004.3079.1 0.67 -1.4
3,017,741 - Xcc-8004.3079.1 0.67 -1.6
3,017,741 - Xcc-8004.3079.1 0.67 -0.3
3,017,741 - Xcc-8004.3079.1 0.67 -2.4
3,017,741 - Xcc-8004.3079.1 0.67 -0.6
3,017,741 - Xcc-8004.3079.1 0.67 +0.0
3,017,741 - Xcc-8004.3079.1 0.67 -0.6
3,017,741 - Xcc-8004.3079.1 0.67 -3.2
3,017,741 - Xcc-8004.3079.1 0.67 -1.2
3,017,741 - Xcc-8004.3079.1 0.67 -1.2
3,017,797 + Xcc-8004.3079.1 0.75 -1.4
3,017,798 - Xcc-8004.3079.1 0.76 -1.4
3,017,798 - Xcc-8004.3079.1 0.76 +0.2
3,017,798 - Xcc-8004.3079.1 0.76 -0.2
3,017,798 - Xcc-8004.3079.1 0.76 -0.3
3,017,798 - Xcc-8004.3079.1 0.76 -1.4
3,017,798 - Xcc-8004.3079.1 0.76 -0.9
3,017,798 - Xcc-8004.3079.1 0.76 -0.1
3,017,881 + Xcc-8004.3079.1 0.88 -1.3
3,017,881 + Xcc-8004.3079.1 0.88 -0.8
3,017,881 + Xcc-8004.3079.1 0.88 -1.3
3,017,881 + Xcc-8004.3079.1 0.88 -0.1
3,017,881 + Xcc-8004.3079.1 0.88 -0.3
3,017,882 - Xcc-8004.3079.1 0.88 -1.7
3,017,882 - Xcc-8004.3079.1 0.88 -1.7
3,017,882 - Xcc-8004.3079.1 0.88 -1.4
3,017,882 - Xcc-8004.3079.1 0.88 -1.1
3,017,941 + -2.5
3,017,941 + -0.3
3,017,941 + -0.6
3,017,942 - -1.0
3,017,982 + -1.3
3,017,982 + -2.0
3,017,982 + -2.3
3,017,983 - -0.2
3,017,983 - -1.3
3,017,983 - -0.4
3,017,983 - -2.0
3,017,983 - -0.2
3,017,983 - -1.8
3,017,983 - -2.0
3,017,983 - -3.3
3,017,983 - -2.7
3,018,108 + Xcc-8004.3080.1 0.13 -0.6
3,018,109 - Xcc-8004.3080.1 0.13 -1.0
3,018,109 - Xcc-8004.3080.1 0.13 -2.0
3,018,109 - Xcc-8004.3080.1 0.13 -1.3
3,018,159 + Xcc-8004.3080.1 0.17 -2.2
3,018,159 + Xcc-8004.3080.1 0.17 -0.4
3,018,159 + Xcc-8004.3080.1 0.17 -0.2
3,018,159 + Xcc-8004.3080.1 0.17 -0.1
3,018,159 + Xcc-8004.3080.1 0.17 -1.4
3,018,159 + Xcc-8004.3080.1 0.17 -2.4
3,018,160 - Xcc-8004.3080.1 0.18 -1.2
3,018,160 - Xcc-8004.3080.1 0.18 -2.4
3,018,160 - Xcc-8004.3080.1 0.18 -3.1
3,018,174 + Xcc-8004.3080.1 0.19 -0.6
3,018,175 - Xcc-8004.3080.1 0.19 -0.5
3,018,175 - Xcc-8004.3080.1 0.19 +0.7
3,018,188 + Xcc-8004.3080.1 0.20 -0.4
3,018,264 + Xcc-8004.3080.1 0.27 -2.3
3,018,264 + Xcc-8004.3080.1 0.27 -1.7
3,018,265 - Xcc-8004.3080.1 0.27 +2.3
3,018,265 - Xcc-8004.3080.1 0.27 -1.6
3,018,265 - Xcc-8004.3080.1 0.27 -0.6
3,018,265 - Xcc-8004.3080.1 0.27 -0.1
3,018,306 + Xcc-8004.3080.1 0.30 -1.1
3,018,306 + Xcc-8004.3080.1 0.30 -1.0
3,018,306 + Xcc-8004.3080.1 0.30 +0.2
3,018,306 + Xcc-8004.3080.1 0.30 -2.4
3,018,306 + Xcc-8004.3080.1 0.30 -1.8
3,018,307 - Xcc-8004.3080.1 0.30 -0.9
3,018,307 - Xcc-8004.3080.1 0.30 -0.6
3,018,307 - Xcc-8004.3080.1 0.30 -1.6
3,018,307 - Xcc-8004.3080.1 0.30 -2.4
3,018,307 - Xcc-8004.3080.1 0.30 -1.4
3,018,360 + Xcc-8004.3080.1 0.35 -2.5
3,018,485 + Xcc-8004.3080.1 0.46 -2.0
3,018,485 + Xcc-8004.3080.1 0.46 -1.9
3,018,485 + Xcc-8004.3080.1 0.46 -0.7
3,018,485 + Xcc-8004.3080.1 0.46 -2.1
3,018,485 + Xcc-8004.3080.1 0.46 -1.4
3,018,486 - Xcc-8004.3080.1 0.46 -3.7
3,018,486 - Xcc-8004.3080.1 0.46 -0.4
3,018,486 - Xcc-8004.3080.1 0.46 -2.0
3,018,486 - Xcc-8004.3080.1 0.46 -1.3
3,018,486 - Xcc-8004.3080.1 0.46 -3.2
3,018,612 + Xcc-8004.3080.1 0.57 -0.7
3,018,612 + Xcc-8004.3080.1 0.57 -0.3
3,018,612 + Xcc-8004.3080.1 0.57 -1.7
3,018,612 + Xcc-8004.3080.1 0.57 -2.9
3,018,612 + Xcc-8004.3080.1 0.57 +0.4
3,018,615 + Xcc-8004.3080.1 0.57 -0.9
3,018,615 + Xcc-8004.3080.1 0.57 -1.4
3,018,616 - Xcc-8004.3080.1 0.57 -2.4
3,018,616 - Xcc-8004.3080.1 0.57 +0.7
3,018,789 + Xcc-8004.3080.1 0.72 -0.2
3,018,789 + Xcc-8004.3080.1 0.72 -1.3
3,018,789 + Xcc-8004.3080.1 0.72 -2.2
3,018,789 + Xcc-8004.3080.1 0.72 -1.6
3,018,789 + Xcc-8004.3080.1 0.72 -1.2
3,018,789 + Xcc-8004.3080.1 0.72 -0.3
3,018,790 - Xcc-8004.3080.1 0.72 -2.8
3,018,790 - Xcc-8004.3080.1 0.72 -1.2
3,018,906 + Xcc-8004.3080.1 0.83 -0.9
3,018,907 - Xcc-8004.3080.1 0.83 -1.2
3,018,933 + Xcc-8004.3080.1 0.85 -0.8
3,018,933 + Xcc-8004.3080.1 0.85 -1.9
3,018,933 + Xcc-8004.3080.1 0.85 -1.9
3,018,934 - Xcc-8004.3080.1 0.85 -2.1
3,018,934 - Xcc-8004.3080.1 0.85 -1.5
3,018,934 - Xcc-8004.3080.1 0.85 -2.8

Or see this region's nucleotide sequence