Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3054.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
2,986,051	-				-0.3
2,986,051	-				-0.5
2,986,051	-				+0.5
2,986,051	-				-0.4
2,986,051	-				-1.0
2,986,063	-				-0.9
2,986,075	-				-2.4
2,986,075	-				+0.5
2,986,075	-				-0.1
2,986,075	-				+1.7
2,986,075	-				+0.6
2,986,075	-				+0.2
2,986,078	+				+1.7
2,987,459	-		Xcc-8004.3054.1	0.65	-0.9
2,987,459	-		Xcc-8004.3054.1	0.65	-1.7
2,987,459	-		Xcc-8004.3054.1	0.65	-0.1
2,987,795	-		Xcc-8004.3054.1	0.90	-2.0
2,987,883	-				+0.1
2,987,883	-				-1.3
2,987,883	-				-0.2
2,987,883	-				-1.9
2,987,942	-				+1.9
2,987,949	+				+0.7
2,987,949	+				-1.3
2,987,949	+				+0.8
2,987,950	-				-0.1
2,987,950	-				+0.7
2,987,951	+				-0.4
2,987,951	+				-0.3
2,987,951	+				+0.7
2,987,951	+				-0.6
2,987,951	+				-1.1
2,987,951	+				-0.6
2,987,954	+				-0.2
2,988,001	-				-2.8
2,988,022	+				+0.3
2,988,284	+				-0.0
2,988,284	+				+0.3
2,988,284	+				+0.4
2,988,284	+				-1.4
2,988,284	+				-0.4
2,988,284	+				+0.3
2,988,284	+				-0.4
2,988,284	+				-0.0
2,988,284	+				-3.1
2,988,285	-				+0.7
2,988,285	-				+0.3
2,988,422	+				+0.4
2,988,423	-				-0.4
2,988,559	+		Xcc-8004.3057.1	0.13	-1.2
2,988,559	+		Xcc-8004.3057.1	0.13	+0.9
2,988,560	-		Xcc-8004.3057.1	0.13	+0.4
2,988,560	-		Xcc-8004.3057.1	0.13	-0.4
2,988,560	-		Xcc-8004.3057.1	0.13	-0.6
2,988,560	-		Xcc-8004.3057.1	0.13	-1.1
2,988,607	+		Xcc-8004.3057.1	0.18	+0.6
2,988,607	+		Xcc-8004.3057.1	0.18	+0.9
2,988,608	-		Xcc-8004.3057.1	0.18	-0.9
2,988,608	-		Xcc-8004.3057.1	0.18	+0.6
2,988,608	-		Xcc-8004.3057.1	0.18	-1.7
2,988,608	-		Xcc-8004.3057.1	0.18	-0.6
2,988,608	-		Xcc-8004.3057.1	0.18	+0.2
2,988,672	+		Xcc-8004.3057.1	0.25	-0.4
2,988,780	-		Xcc-8004.3057.1	0.36	-0.6
2,988,780	-		Xcc-8004.3057.1	0.36	-0.4
2,988,793	+		Xcc-8004.3057.1	0.38	-1.4
2,988,794	-		Xcc-8004.3057.1	0.38	+0.1
2,988,794	-		Xcc-8004.3057.1	0.38	+0.9
2,988,894	+		Xcc-8004.3057.1	0.48	+0.3
2,988,895	-		Xcc-8004.3057.1	0.49	-0.5
2,988,925	+		Xcc-8004.3057.1	0.52	-0.3
2,988,925	+		Xcc-8004.3057.1	0.52	+0.5
2,988,925	+		Xcc-8004.3057.1	0.52	-0.4
2,988,926	-		Xcc-8004.3057.1	0.52	+0.1
2,988,926	-		Xcc-8004.3057.1	0.52	+1.7
2,988,926	-		Xcc-8004.3057.1	0.52	+0.6