Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3048.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
2,980,981	+		Xcc-8004.3046.1	0.64	+1.3
2,980,981	+		Xcc-8004.3046.1	0.64	+0.5
2,980,981	+		Xcc-8004.3046.1	0.64	-0.4
2,980,981	+		Xcc-8004.3046.1	0.64	-0.4
2,980,981	+		Xcc-8004.3046.1	0.64	+0.9
2,980,981	+		Xcc-8004.3046.1	0.64	+2.1
2,980,981	+		Xcc-8004.3046.1	0.64	+0.0
2,980,982	-		Xcc-8004.3046.1	0.64	-1.4
2,980,982	-		Xcc-8004.3046.1	0.64	-0.6
2,980,982	-		Xcc-8004.3046.1	0.64	-1.8
2,980,982	-		Xcc-8004.3046.1	0.64	-0.5
2,980,982	-		Xcc-8004.3046.1	0.64	-0.2
2,980,982	-		Xcc-8004.3046.1	0.64	-0.0
2,980,982	-		Xcc-8004.3046.1	0.64	-0.3
2,980,999	+		Xcc-8004.3046.1	0.65	+0.7
2,980,999	+		Xcc-8004.3046.1	0.65	+1.4
2,981,000	-		Xcc-8004.3046.1	0.65	-0.5
2,981,000	-		Xcc-8004.3046.1	0.65	+0.3
2,981,077	+		Xcc-8004.3046.1	0.69	+1.7
2,981,077	+		Xcc-8004.3046.1	0.69	-0.1
2,981,077	+		Xcc-8004.3046.1	0.69	-0.6
2,981,077	+		Xcc-8004.3046.1	0.69	-0.9
2,981,077	+		Xcc-8004.3046.1	0.69	-0.6
2,981,077	+		Xcc-8004.3046.1	0.69	+0.8
2,981,077	+		Xcc-8004.3046.1	0.69	+1.4
2,981,077	+		Xcc-8004.3046.1	0.69	+0.6
2,981,077	+		Xcc-8004.3046.1	0.69	+0.1
2,981,077	+		Xcc-8004.3046.1	0.69	-0.3
2,981,078	-		Xcc-8004.3046.1	0.69	+1.7
2,981,078	-		Xcc-8004.3046.1	0.69	-0.8
2,981,078	-		Xcc-8004.3046.1	0.69	-1.4
2,981,078	-		Xcc-8004.3046.1	0.69	-2.7
2,981,078	-		Xcc-8004.3046.1	0.69	+0.6
2,981,078	-		Xcc-8004.3046.1	0.69	-1.6
2,981,078	-		Xcc-8004.3046.1	0.69	+1.1
2,981,092	+		Xcc-8004.3046.1	0.70	-0.2
2,981,092	+		Xcc-8004.3046.1	0.70	+0.2
2,981,092	+		Xcc-8004.3046.1	0.70	-0.1
2,981,092	+		Xcc-8004.3046.1	0.70	+0.8
2,981,092	+		Xcc-8004.3046.1	0.70	-0.9
2,981,092	+		Xcc-8004.3046.1	0.70	-0.9
2,981,092	+		Xcc-8004.3046.1	0.70	+0.5
2,981,092	+		Xcc-8004.3046.1	0.70	+1.1
2,981,092	+		Xcc-8004.3046.1	0.70	+0.1
2,981,093	-		Xcc-8004.3046.1	0.70	+0.1
2,981,093	-		Xcc-8004.3046.1	0.70	+0.3
2,981,093	-		Xcc-8004.3046.1	0.70	+0.6
2,981,093	-		Xcc-8004.3046.1	0.70	+0.3
2,981,093	-		Xcc-8004.3046.1	0.70	-0.5
2,981,093	-		Xcc-8004.3046.1	0.70	-0.2
2,981,093	-		Xcc-8004.3046.1	0.70	+2.3
2,981,093	-		Xcc-8004.3046.1	0.70	-0.1
2,981,093	-		Xcc-8004.3046.1	0.70	+0.3
2,981,093	-		Xcc-8004.3046.1	0.70	-0.0
2,981,093	-		Xcc-8004.3046.1	0.70	+0.3
2,981,093	-		Xcc-8004.3046.1	0.70	+0.2
2,981,161	+		Xcc-8004.3046.1	0.74	-0.2
2,981,161	+		Xcc-8004.3046.1	0.74	-0.1
2,981,161	+		Xcc-8004.3046.1	0.74	-0.0
2,981,162	-		Xcc-8004.3046.1	0.74	+0.6
2,981,162	-		Xcc-8004.3046.1	0.74	-0.6
2,981,162	-		Xcc-8004.3046.1	0.74	-0.2
2,981,162	-		Xcc-8004.3046.1	0.74	-1.1
2,981,162	-		Xcc-8004.3046.1	0.74	-0.2
2,981,162	-		Xcc-8004.3046.1	0.74	-0.3
2,981,162	-		Xcc-8004.3046.1	0.74	+0.2
2,981,162	-		Xcc-8004.3046.1	0.74	+0.7
2,981,410	+		Xcc-8004.3046.1	0.86	-0.4
2,981,410	+		Xcc-8004.3046.1	0.86	+0.3
2,981,410	+		Xcc-8004.3046.1	0.86	-1.3
2,981,410	+		Xcc-8004.3046.1	0.86	-0.3
2,981,411	-		Xcc-8004.3046.1	0.86	-0.0
2,981,411	-		Xcc-8004.3046.1	0.86	-0.2
2,981,509	+				+0.4
2,981,509	+				-0.6
2,981,509	+				+0.1
2,981,509	+				+0.1
2,981,509	+				-0.7
2,981,509	+				+0.2
2,981,509	+				+1.2
2,981,509	+				+1.1
2,981,509	+				-1.6
2,981,509	+				-0.0
2,981,509	+				-0.7
2,981,509	+				+0.1
2,981,509	+				+0.6
2,981,509	+				-0.0
2,981,510	-				+0.1
2,981,510	-				-0.5
2,981,510	-				+0.5
2,981,510	-				+1.0
2,981,510	-				-0.4
2,981,510	-				+0.7
2,981,510	-				-1.9
2,981,510	-				-0.3
2,981,510	-				-2.4
2,981,510	-				+2.3
2,981,510	-				-0.7
2,981,510	-				+0.6
2,981,510	-				-1.4
2,981,510	-				+0.3
2,981,602	+				+1.1
2,981,602	+				-0.2
2,981,602	+				+0.9
2,981,602	+				+1.0
2,981,602	+				-0.6
2,981,602	+				-1.3
2,981,603	-				+0.1
2,981,603	-				-0.5
2,981,603	-				+0.7
2,981,603	-				-1.2
2,981,603	-				+0.4
2,981,603	-				+0.0
2,981,603	-				-1.9
2,981,603	-				-0.1
2,981,632	+				-0.8
2,981,633	-				-0.7
2,981,633	-				+0.1
2,981,675	-				-0.3
2,981,821	-		Xcc-8004.3047.1	0.30	+0.1
2,981,849	+		Xcc-8004.3047.1	0.39	+0.1
2,981,901	+		Xcc-8004.3047.1	0.56	+0.3
2,981,901	+		Xcc-8004.3047.1	0.56	-0.1
2,981,901	+		Xcc-8004.3047.1	0.56	+1.3
2,981,902	-		Xcc-8004.3047.1	0.57	+0.6
2,981,902	-		Xcc-8004.3047.1	0.57	-0.3
2,981,902	-		Xcc-8004.3047.1	0.57	+0.5
2,982,145	+		Xcc-8004.3048.1	0.52	-0.3
2,982,145	+		Xcc-8004.3048.1	0.52	-0.6
2,982,145	+		Xcc-8004.3048.1	0.52	+0.3
2,982,145	+		Xcc-8004.3048.1	0.52	-0.1
2,982,145	+		Xcc-8004.3048.1	0.52	-1.3
2,982,146	-		Xcc-8004.3048.1	0.52	+0.1
2,982,146	-		Xcc-8004.3048.1	0.52	-0.0
2,982,146	-		Xcc-8004.3048.1	0.52	+0.6
2,982,146	-		Xcc-8004.3048.1	0.52	+0.1
2,982,146	-		Xcc-8004.3048.1	0.52	+0.2
2,982,146	-		Xcc-8004.3048.1	0.52	-1.3
2,982,146	-		Xcc-8004.3048.1	0.52	-0.7
2,982,146	-		Xcc-8004.3048.1	0.52	-1.5
2,982,533	+		Xcc-8004.3049.1	0.10	-0.9
2,982,533	+		Xcc-8004.3049.1	0.10	-0.9
2,982,533	+		Xcc-8004.3049.1	0.10	-1.4
2,982,533	+		Xcc-8004.3049.1	0.10	-1.7
2,982,533	+		Xcc-8004.3049.1	0.10	-3.6
2,982,533	+		Xcc-8004.3049.1	0.10	-0.9
2,982,533	+		Xcc-8004.3049.1	0.10	+0.7
2,982,533	+		Xcc-8004.3049.1	0.10	-1.4
2,982,533	+		Xcc-8004.3049.1	0.10	-0.0
2,982,534	-		Xcc-8004.3049.1	0.10	-2.4
2,982,534	-		Xcc-8004.3049.1	0.10	-1.2
2,982,534	-		Xcc-8004.3049.1	0.10	-2.0
2,982,548	+		Xcc-8004.3049.1	0.11	-0.7
2,982,548	+		Xcc-8004.3049.1	0.11	-2.1
2,982,548	+		Xcc-8004.3049.1	0.11	-2.2
2,982,548	+		Xcc-8004.3049.1	0.11	-1.4
2,982,549	-		Xcc-8004.3049.1	0.11	-1.3
2,982,549	-		Xcc-8004.3049.1	0.11	-2.0
2,982,549	-		Xcc-8004.3049.1	0.11	-0.3
2,982,549	-		Xcc-8004.3049.1	0.11	-1.4
2,982,915	-		Xcc-8004.3049.1	0.36	-1.6
2,982,915	-		Xcc-8004.3049.1	0.36	-1.9
2,982,944	+		Xcc-8004.3049.1	0.37	-1.1
2,982,944	+		Xcc-8004.3049.1	0.37	+0.1
2,982,944	+		Xcc-8004.3049.1	0.37	-2.4
2,982,944	+		Xcc-8004.3049.1	0.37	-1.6
2,982,944	+		Xcc-8004.3049.1	0.37	-0.2
2,982,944	+		Xcc-8004.3049.1	0.37	+1.7
2,982,945	-		Xcc-8004.3049.1	0.38	-2.2
2,982,945	-		Xcc-8004.3049.1	0.38	+0.7
2,982,945	-		Xcc-8004.3049.1	0.38	-2.0
2,982,945	-		Xcc-8004.3049.1	0.38	-0.9
2,982,982	-		Xcc-8004.3049.1	0.40	-1.1
2,982,982	-		Xcc-8004.3049.1	0.40	-0.9
2,982,982	-		Xcc-8004.3049.1	0.40	+0.7
2,983,145	+		Xcc-8004.3049.1	0.51	+0.1
2,983,238	+		Xcc-8004.3049.1	0.57	-1.1
2,983,238	+		Xcc-8004.3049.1	0.57	-1.6