Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2957.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
2,879,540	-		Xcc-8004.2956.1	0.16	-1.8
2,879,540	-		Xcc-8004.2956.1	0.16	-2.2
2,879,934	+		Xcc-8004.2956.1	0.57	-3.6
2,880,458	+				+0.1
2,880,578	+				+0.7
2,880,578	+				+0.4
2,880,578	+				-2.1
2,880,579	-				-1.9
2,880,579	-				-0.9
2,880,579	-				+0.7
2,880,579	-				-2.0
2,880,815	+		Xcc-8004.2957.1	0.19	-2.3
2,880,816	-		Xcc-8004.2957.1	0.19	-1.8
2,880,816	-		Xcc-8004.2957.1	0.19	-2.4
2,880,869	+		Xcc-8004.2957.1	0.21	-1.1
2,880,869	+		Xcc-8004.2957.1	0.21	-1.7
2,880,870	-		Xcc-8004.2957.1	0.21	-1.9
2,880,873	+		Xcc-8004.2957.1	0.21	-2.3
2,880,873	+		Xcc-8004.2957.1	0.21	-1.3
2,880,874	-		Xcc-8004.2957.1	0.21	-0.7
2,880,874	-		Xcc-8004.2957.1	0.21	-4.1
2,881,043	+		Xcc-8004.2957.1	0.28	-3.0
2,881,164	+		Xcc-8004.2957.1	0.33	-2.8
2,881,164	+		Xcc-8004.2957.1	0.33	-2.8
2,881,164	+		Xcc-8004.2957.1	0.33	-2.7
2,881,165	-		Xcc-8004.2957.1	0.33	-0.9
2,881,165	-		Xcc-8004.2957.1	0.33	-3.1
2,881,531	-		Xcc-8004.2957.1	0.47	-2.6
2,881,531	-		Xcc-8004.2957.1	0.47	-1.7
2,881,953	+		Xcc-8004.2957.1	0.64	-2.5
2,881,953	+		Xcc-8004.2957.1	0.64	-0.7
2,881,953	+		Xcc-8004.2957.1	0.64	-3.0
2,881,954	-		Xcc-8004.2957.1	0.64	+0.4
2,881,954	-		Xcc-8004.2957.1	0.64	-1.1
2,881,998	+		Xcc-8004.2957.1	0.66	-3.8
2,881,998	+		Xcc-8004.2957.1	0.66	-0.9
2,881,998	+		Xcc-8004.2957.1	0.66	-2.9
2,881,998	+		Xcc-8004.2957.1	0.66	-1.8
2,881,998	+		Xcc-8004.2957.1	0.66	-1.1
2,881,999	-		Xcc-8004.2957.1	0.66	-1.7
2,881,999	-		Xcc-8004.2957.1	0.66	-2.4
2,881,999	-		Xcc-8004.2957.1	0.66	-0.7
2,881,999	-		Xcc-8004.2957.1	0.66	-1.4
2,882,030	+		Xcc-8004.2957.1	0.67	-1.7
2,882,030	+		Xcc-8004.2957.1	0.67	-1.8
2,882,054	+		Xcc-8004.2957.1	0.68	-2.3
2,882,423	+		Xcc-8004.2957.1	0.83	-4.0
2,882,784	+				-0.0
2,882,784	+				-0.9
2,882,784	+				-0.4
2,882,785	-				-2.0
2,882,891	-				-1.3
2,882,891	-				+0.6
2,882,991	-				+0.2
2,882,991	-				-0.3
2,883,002	+				-1.2
2,883,002	+				-2.1
2,883,002	+				-4.0
2,883,003	-				+1.3
2,883,179	-				+0.4
2,883,179	-				+0.5
2,883,179	-				+0.5
2,883,310	-				+0.7
2,883,310	-				+1.1
2,883,310	-				+1.5
2,883,357	-				+0.3
2,883,516	+				+2.3
2,883,516	+				+0.1
2,883,516	+				+1.3
2,883,517	-				+0.1
2,883,566	-				-0.2
2,883,566	-				+0.5
2,883,609	+				-0.9
2,883,609	+				-0.2
2,883,609	+				-0.7
2,883,609	+				-0.8
2,883,609	+				-0.6
2,883,646	-		Xcc-8004.2958.1	0.18	-1.2