Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2948.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
2,870,642	+		Xcc-8004.2947.1	0.18	-3.8
2,870,642	+		Xcc-8004.2947.1	0.18	+0.1
2,870,642	+		Xcc-8004.2947.1	0.18	-1.5
2,870,912	+		Xcc-8004.2947.1	0.43	-1.4
2,870,960	+		Xcc-8004.2947.1	0.47	-3.0
2,870,960	+		Xcc-8004.2947.1	0.47	-3.0
2,870,960	+		Xcc-8004.2947.1	0.47	-2.2
2,871,197	+		Xcc-8004.2947.1	0.69	-1.2
2,871,197	+		Xcc-8004.2947.1	0.69	-2.7
2,871,197	+		Xcc-8004.2947.1	0.69	-1.9
2,871,197	+		Xcc-8004.2947.1	0.69	-1.9
2,871,197	+		Xcc-8004.2947.1	0.69	-1.4
2,871,197	+		Xcc-8004.2947.1	0.69	-2.3
2,871,198	-		Xcc-8004.2947.1	0.69	-2.1
2,871,198	-		Xcc-8004.2947.1	0.69	-2.9
2,871,198	-		Xcc-8004.2947.1	0.69	-1.1
2,871,198	-		Xcc-8004.2947.1	0.69	-1.9
2,871,198	-		Xcc-8004.2947.1	0.69	-3.7
2,871,323	+		Xcc-8004.2947.1	0.81	-2.0
2,871,323	+		Xcc-8004.2947.1	0.81	-1.4
2,871,371	+		Xcc-8004.2947.1	0.85	-2.4
2,871,371	+		Xcc-8004.2947.1	0.85	-2.0
2,871,742	+		Xcc-8004.2948.1	0.17	-0.0
2,871,742	+		Xcc-8004.2948.1	0.17	-1.4
2,871,766	+		Xcc-8004.2948.1	0.18	-0.6
2,871,766	+		Xcc-8004.2948.1	0.18	-1.7
2,871,767	-		Xcc-8004.2948.1	0.18	-3.5
2,871,857	-		Xcc-8004.2948.1	0.25	-2.4
2,872,187	+		Xcc-8004.2948.1	0.51	-1.9
2,872,188	-		Xcc-8004.2948.1	0.51	-2.1
2,872,237	+		Xcc-8004.2948.1	0.55	-2.3
2,872,444	+		Xcc-8004.2948.1	0.71	-2.0
2,872,444	+		Xcc-8004.2948.1	0.71	-0.3
2,872,444	+		Xcc-8004.2948.1	0.71	-0.1
2,872,444	+		Xcc-8004.2948.1	0.71	-2.7
2,872,444	+		Xcc-8004.2948.1	0.71	-0.6
2,872,444	+		Xcc-8004.2948.1	0.71	-2.9
2,872,444	+		Xcc-8004.2948.1	0.71	-1.8
2,872,444	+		Xcc-8004.2948.1	0.71	-1.8
2,872,445	-		Xcc-8004.2948.1	0.71	-3.0
2,872,650	+		Xcc-8004.2948.1	0.87	-1.2
2,872,650	+		Xcc-8004.2948.1	0.87	-0.9
2,873,325	+		Xcc-8004.2949.1	0.55	-0.6
2,873,325	+		Xcc-8004.2949.1	0.55	-1.7
2,873,325	+		Xcc-8004.2949.1	0.55	-2.5
2,873,439	+		Xcc-8004.2949.1	0.68	-0.7
2,873,440	-		Xcc-8004.2949.1	0.68	-1.6
2,873,793	+		Xcc-8004.2950.1	0.12	-1.0