Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2944.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2942.1 and Xcc-8004.2943.1 overlap by 11 nucleotidesXcc-8004.2943.1 and Xcc-8004.2944.1 overlap by 7 nucleotidesXcc-8004.2944.1 and Xcc-8004.2945.1 overlap by 4 nucleotidesXcc-8004.2945.1 and Xcc-8004.2946.1 overlap by 4 nucleotides Xcc-8004.2942.1: Xcc-8004.2942.1 - Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31), at 2,866,609 to 2,867,229 Xcc-8004.2942.1 Xcc-8004.2943.1: Xcc-8004.2943.1 - Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-), at 2,867,219 to 2,867,995 Xcc-8004.2943.1 Xcc-8004.2944.1: Xcc-8004.2944.1 - Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16), at 2,867,989 to 2,868,723 Xcc-8004.2944.1 Xcc-8004.2945.1: Xcc-8004.2945.1 - Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-), at 2,868,720 to 2,869,322 Xcc-8004.2945.1 Xcc-8004.2946.1: Xcc-8004.2946.1 - Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 2,869,319 to 2,870,446 Xcc-8004.2946.1 Position (kb) 2867 2868 2869Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2867.109 kb on - strand, within Xcc-8004.2942.1at 2867.234 kb on + strandat 2867.235 kb on - strandat 2867.235 kb on - strandat 2867.431 kb on + strand, within Xcc-8004.2943.1at 2867.436 kb on + strand, within Xcc-8004.2943.1at 2867.437 kb on - strand, within Xcc-8004.2943.1at 2867.738 kb on + strand, within Xcc-8004.2943.1at 2867.739 kb on - strand, within Xcc-8004.2943.1at 2867.739 kb on - strand, within Xcc-8004.2943.1at 2867.808 kb on + strand, within Xcc-8004.2943.1at 2867.808 kb on + strand, within Xcc-8004.2943.1at 2867.808 kb on + strand, within Xcc-8004.2943.1at 2867.809 kb on - strand, within Xcc-8004.2943.1at 2867.809 kb on - strand, within Xcc-8004.2943.1at 2867.809 kb on - strand, within Xcc-8004.2943.1at 2867.809 kb on - strand, within Xcc-8004.2943.1at 2867.809 kb on - strand, within Xcc-8004.2943.1at 2867.809 kb on - strand, within Xcc-8004.2943.1at 2867.809 kb on - strand, within Xcc-8004.2943.1at 2867.848 kb on - strand, within Xcc-8004.2943.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.155 kb on + strand, within Xcc-8004.2944.1at 2868.156 kb on - strand, within Xcc-8004.2944.1at 2868.156 kb on - strand, within Xcc-8004.2944.1at 2868.156 kb on - strand, within Xcc-8004.2944.1at 2868.156 kb on - strand, within Xcc-8004.2944.1at 2868.156 kb on - strand, within Xcc-8004.2944.1at 2868.156 kb on - strand, within Xcc-8004.2944.1at 2868.156 kb on - strand, within Xcc-8004.2944.1at 2868.156 kb on - strand, within Xcc-8004.2944.1at 2868.156 kb on - strand, within Xcc-8004.2944.1at 2868.156 kb on - strand, within Xcc-8004.2944.1at 2868.304 kb on + strand, within Xcc-8004.2944.1at 2868.304 kb on + strand, within Xcc-8004.2944.1at 2868.304 kb on + strand, within Xcc-8004.2944.1at 2868.305 kb on - strand, within Xcc-8004.2944.1at 2868.418 kb on + strand, within Xcc-8004.2944.1at 2868.419 kb on - strand, within Xcc-8004.2944.1at 2868.510 kb on + strand, within Xcc-8004.2944.1at 2868.539 kb on + strand, within Xcc-8004.2944.1at 2868.653 kb on + strandat 2868.707 kb on + strandat 2868.887 kb on - strand, within Xcc-8004.2945.1at 2868.901 kb on + strand, within Xcc-8004.2945.1at 2868.902 kb on - strand, within Xcc-8004.2945.1at 2869.322 kb on + strandat 2869.322 kb on + strandat 2869.554 kb on + strand, within Xcc-8004.2946.1at 2869.554 kb on + strand, within Xcc-8004.2946.1at 2869.554 kb on + strand, within Xcc-8004.2946.1at 2869.554 kb on + strand, within Xcc-8004.2946.1at 2869.613 kb on - strand, within Xcc-8004.2946.1at 2869.674 kb on + strand, within Xcc-8004.2946.1at 2869.674 kb on + strand, within Xcc-8004.2946.1at 2869.674 kb on + strand, within Xcc-8004.2946.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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2,867,109 - Xcc-8004.2942.1 0.81 -3.7
2,867,234 + -0.8
2,867,235 - -0.3
2,867,235 - +0.6
2,867,431 + Xcc-8004.2943.1 0.27 -2.3
2,867,436 + Xcc-8004.2943.1 0.28 -1.3
2,867,437 - Xcc-8004.2943.1 0.28 -2.4
2,867,738 + Xcc-8004.2943.1 0.67 -1.2
2,867,739 - Xcc-8004.2943.1 0.67 -2.4
2,867,739 - Xcc-8004.2943.1 0.67 -3.0
2,867,808 + Xcc-8004.2943.1 0.76 -2.1
2,867,808 + Xcc-8004.2943.1 0.76 -1.3
2,867,808 + Xcc-8004.2943.1 0.76 -2.4
2,867,809 - Xcc-8004.2943.1 0.76 -0.3
2,867,809 - Xcc-8004.2943.1 0.76 -3.3
2,867,809 - Xcc-8004.2943.1 0.76 -1.7
2,867,809 - Xcc-8004.2943.1 0.76 -3.9
2,867,809 - Xcc-8004.2943.1 0.76 -3.1
2,867,809 - Xcc-8004.2943.1 0.76 -3.0
2,867,809 - Xcc-8004.2943.1 0.76 -2.2
2,867,848 - Xcc-8004.2943.1 0.81 -2.4
2,868,155 + Xcc-8004.2944.1 0.23 -4.0
2,868,155 + Xcc-8004.2944.1 0.23 -2.1
2,868,155 + Xcc-8004.2944.1 0.23 -2.3
2,868,155 + Xcc-8004.2944.1 0.23 -3.0
2,868,155 + Xcc-8004.2944.1 0.23 -2.5
2,868,155 + Xcc-8004.2944.1 0.23 -2.9
2,868,155 + Xcc-8004.2944.1 0.23 -1.3
2,868,155 + Xcc-8004.2944.1 0.23 -3.0
2,868,155 + Xcc-8004.2944.1 0.23 -2.1
2,868,155 + Xcc-8004.2944.1 0.23 -1.6
2,868,155 + Xcc-8004.2944.1 0.23 -2.4
2,868,155 + Xcc-8004.2944.1 0.23 -4.0
2,868,156 - Xcc-8004.2944.1 0.23 -3.1
2,868,156 - Xcc-8004.2944.1 0.23 -1.6
2,868,156 - Xcc-8004.2944.1 0.23 -2.3
2,868,156 - Xcc-8004.2944.1 0.23 -3.7
2,868,156 - Xcc-8004.2944.1 0.23 -1.6
2,868,156 - Xcc-8004.2944.1 0.23 +1.7
2,868,156 - Xcc-8004.2944.1 0.23 -1.0
2,868,156 - Xcc-8004.2944.1 0.23 -2.1
2,868,156 - Xcc-8004.2944.1 0.23 -1.2
2,868,156 - Xcc-8004.2944.1 0.23 -3.7
2,868,304 + Xcc-8004.2944.1 0.43 -0.7
2,868,304 + Xcc-8004.2944.1 0.43 -3.9
2,868,304 + Xcc-8004.2944.1 0.43 -0.9
2,868,305 - Xcc-8004.2944.1 0.43 -2.7
2,868,418 + Xcc-8004.2944.1 0.58 -2.4
2,868,419 - Xcc-8004.2944.1 0.59 +0.7
2,868,510 + Xcc-8004.2944.1 0.71 -3.4
2,868,539 + Xcc-8004.2944.1 0.75 -2.2
2,868,653 + -1.3
2,868,707 + -1.7
2,868,887 - Xcc-8004.2945.1 0.28 -2.7
2,868,901 + Xcc-8004.2945.1 0.30 -2.2
2,868,902 - Xcc-8004.2945.1 0.30 -4.1
2,869,322 + -1.1
2,869,322 + -0.0
2,869,554 + Xcc-8004.2946.1 0.21 -1.3
2,869,554 + Xcc-8004.2946.1 0.21 -1.4
2,869,554 + Xcc-8004.2946.1 0.21 -3.3
2,869,554 + Xcc-8004.2946.1 0.21 -1.4
2,869,613 - Xcc-8004.2946.1 0.26 -3.0
2,869,674 + Xcc-8004.2946.1 0.31 +0.1
2,869,674 + Xcc-8004.2946.1 0.31 -2.7
2,869,674 + Xcc-8004.2946.1 0.31 -0.8

Or see this region's nucleotide sequence