Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2922.1

Experiment: Pectin from apple 2 g/L (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.2920.1 and Xcc-8004.2921.1 overlap by 4 nucleotidesXcc-8004.2921.1 and Xcc-8004.2922.1 are separated by 74 nucleotidesXcc-8004.2922.1 and Xcc-8004.2923.1 are separated by 76 nucleotides Xcc-8004.2920.1: Xcc-8004.2920.1 - Ferrous iron transport protein B, at 2,844,633 to 2,846,492 Xcc-8004.2920.1 Xcc-8004.2921.1: Xcc-8004.2921.1 - ferrous iron transport protein, at 2,846,489 to 2,846,779 Xcc-8004.2921.1 Xcc-8004.2922.1: Xcc-8004.2922.1 - Methylglutaconyl-CoA hydratase (EC 4.2.1.18), at 2,846,854 to 2,847,651 Xcc-8004.2922.1 Xcc-8004.2923.1: Xcc-8004.2923.1 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 2,847,728 to 2,848,624 Xcc-8004.2923.1 Position (kb) 2846 2847 2848Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2845.927 kb on + strand, within Xcc-8004.2920.1at 2845.927 kb on + strand, within Xcc-8004.2920.1at 2845.928 kb on - strand, within Xcc-8004.2920.1at 2845.928 kb on - strand, within Xcc-8004.2920.1at 2845.928 kb on - strand, within Xcc-8004.2920.1at 2845.928 kb on - strand, within Xcc-8004.2920.1at 2845.928 kb on - strand, within Xcc-8004.2920.1at 2845.928 kb on - strand, within Xcc-8004.2920.1at 2845.928 kb on - strand, within Xcc-8004.2920.1at 2845.928 kb on - strand, within Xcc-8004.2920.1at 2845.928 kb on - strand, within Xcc-8004.2920.1at 2845.928 kb on - strand, within Xcc-8004.2920.1at 2845.928 kb on - strand, within Xcc-8004.2920.1at 2845.928 kb on - strand, within Xcc-8004.2920.1at 2846.203 kb on + strand, within Xcc-8004.2920.1at 2846.203 kb on + strand, within Xcc-8004.2920.1at 2846.203 kb on + strand, within Xcc-8004.2920.1at 2846.203 kb on + strand, within Xcc-8004.2920.1at 2846.204 kb on - strand, within Xcc-8004.2920.1at 2846.204 kb on - strand, within Xcc-8004.2920.1at 2846.204 kb on - strand, within Xcc-8004.2920.1at 2846.204 kb on - strand, within Xcc-8004.2920.1at 2846.204 kb on - strand, within Xcc-8004.2920.1at 2846.204 kb on - strand, within Xcc-8004.2920.1at 2846.204 kb on - strand, within Xcc-8004.2920.1at 2846.296 kb on + strand, within Xcc-8004.2920.1at 2846.296 kb on + strand, within Xcc-8004.2920.1at 2846.384 kb on - strandat 2846.384 kb on - strandat 2846.384 kb on - strandat 2846.384 kb on - strandat 2846.557 kb on + strand, within Xcc-8004.2921.1at 2846.557 kb on + strand, within Xcc-8004.2921.1at 2846.558 kb on - strand, within Xcc-8004.2921.1at 2846.559 kb on + strand, within Xcc-8004.2921.1at 2846.559 kb on + strand, within Xcc-8004.2921.1at 2846.559 kb on + strand, within Xcc-8004.2921.1at 2846.615 kb on + strand, within Xcc-8004.2921.1at 2846.615 kb on + strand, within Xcc-8004.2921.1at 2846.639 kb on + strand, within Xcc-8004.2921.1at 2846.640 kb on - strand, within Xcc-8004.2921.1at 2846.774 kb on + strandat 2846.775 kb on - strandat 2846.817 kb on + strandat 2846.817 kb on + strandat 2846.818 kb on - strandat 2846.818 kb on - strandat 2846.818 kb on - strandat 2846.898 kb on + strandat 2846.899 kb on - strandat 2847.142 kb on + strand, within Xcc-8004.2922.1at 2847.234 kb on + strand, within Xcc-8004.2922.1at 2847.298 kb on + strand, within Xcc-8004.2922.1at 2847.298 kb on + strand, within Xcc-8004.2922.1at 2847.298 kb on + strand, within Xcc-8004.2922.1at 2847.299 kb on - strand, within Xcc-8004.2922.1at 2847.299 kb on - strand, within Xcc-8004.2922.1at 2847.663 kb on + strandat 2847.663 kb on + strandat 2847.663 kb on + strandat 2847.663 kb on + strandat 2847.663 kb on + strandat 2847.663 kb on + strandat 2847.663 kb on + strandat 2847.664 kb on - strandat 2847.664 kb on - strandat 2847.664 kb on - strandat 2847.664 kb on - strandat 2847.664 kb on - strandat 2847.664 kb on - strandat 2847.667 kb on + strandat 2847.667 kb on + strandat 2847.667 kb on + strandat 2847.667 kb on + strandat 2847.667 kb on + strandat 2847.668 kb on - strandat 2847.668 kb on - strandat 2847.668 kb on - strandat 2847.741 kb on + strandat 2847.741 kb on + strandat 2847.742 kb on - strandat 2847.980 kb on + strand, within Xcc-8004.2923.1at 2847.980 kb on + strand, within Xcc-8004.2923.1at 2847.980 kb on + strand, within Xcc-8004.2923.1at 2847.980 kb on + strand, within Xcc-8004.2923.1at 2847.980 kb on + strand, within Xcc-8004.2923.1at 2847.980 kb on + strand, within Xcc-8004.2923.1at 2847.980 kb on + strand, within Xcc-8004.2923.1at 2847.980 kb on + strand, within Xcc-8004.2923.1at 2847.981 kb on - strand, within Xcc-8004.2923.1at 2847.981 kb on - strand, within Xcc-8004.2923.1at 2847.981 kb on - strand, within Xcc-8004.2923.1at 2847.981 kb on - strand, within Xcc-8004.2923.1at 2848.057 kb on + strand, within Xcc-8004.2923.1at 2848.057 kb on + strand, within Xcc-8004.2923.1at 2848.057 kb on + strand, within Xcc-8004.2923.1at 2848.058 kb on - strand, within Xcc-8004.2923.1at 2848.058 kb on - strand, within Xcc-8004.2923.1at 2848.058 kb on - strand, within Xcc-8004.2923.1at 2848.058 kb on - strand, within Xcc-8004.2923.1at 2848.058 kb on - strand, within Xcc-8004.2923.1at 2848.058 kb on - strand, within Xcc-8004.2923.1at 2848.058 kb on - strand, within Xcc-8004.2923.1at 2848.058 kb on - strand, within Xcc-8004.2923.1at 2848.143 kb on - strand, within Xcc-8004.2923.1at 2848.143 kb on - strand, within Xcc-8004.2923.1at 2848.220 kb on + strand, within Xcc-8004.2923.1at 2848.220 kb on + strand, within Xcc-8004.2923.1at 2848.235 kb on + strand, within Xcc-8004.2923.1at 2848.235 kb on + strand, within Xcc-8004.2923.1at 2848.235 kb on + strand, within Xcc-8004.2923.1at 2848.236 kb on - strand, within Xcc-8004.2923.1at 2848.355 kb on + strand, within Xcc-8004.2923.1at 2848.355 kb on + strand, within Xcc-8004.2923.1at 2848.355 kb on + strand, within Xcc-8004.2923.1at 2848.355 kb on + strand, within Xcc-8004.2923.1at 2848.355 kb on + strand, within Xcc-8004.2923.1at 2848.356 kb on - strand, within Xcc-8004.2923.1at 2848.356 kb on - strand, within Xcc-8004.2923.1at 2848.356 kb on - strand, within Xcc-8004.2923.1at 2848.356 kb on - strand, within Xcc-8004.2923.1at 2848.356 kb on - strand, within Xcc-8004.2923.1at 2848.490 kb on + strand, within Xcc-8004.2923.1at 2848.490 kb on + strand, within Xcc-8004.2923.1at 2848.490 kb on + strand, within Xcc-8004.2923.1at 2848.490 kb on + strand, within Xcc-8004.2923.1at 2848.490 kb on + strand, within Xcc-8004.2923.1at 2848.490 kb on + strand, within Xcc-8004.2923.1at 2848.490 kb on + strand, within Xcc-8004.2923.1at 2848.490 kb on + strand, within Xcc-8004.2923.1at 2848.491 kb on - strand, within Xcc-8004.2923.1at 2848.491 kb on - strand, within Xcc-8004.2923.1at 2848.491 kb on - strand, within Xcc-8004.2923.1at 2848.491 kb on - strand, within Xcc-8004.2923.1at 2848.491 kb on - strand, within Xcc-8004.2923.1at 2848.491 kb on - strand, within Xcc-8004.2923.1at 2848.491 kb on - strand, within Xcc-8004.2923.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
remove
2,845,927 + Xcc-8004.2920.1 0.70 +1.7
2,845,927 + Xcc-8004.2920.1 0.70 +0.5
2,845,928 - Xcc-8004.2920.1 0.70 -0.3
2,845,928 - Xcc-8004.2920.1 0.70 -0.0
2,845,928 - Xcc-8004.2920.1 0.70 -0.9
2,845,928 - Xcc-8004.2920.1 0.70 -2.0
2,845,928 - Xcc-8004.2920.1 0.70 +1.3
2,845,928 - Xcc-8004.2920.1 0.70 -1.8
2,845,928 - Xcc-8004.2920.1 0.70 -1.1
2,845,928 - Xcc-8004.2920.1 0.70 -1.1
2,845,928 - Xcc-8004.2920.1 0.70 +0.4
2,845,928 - Xcc-8004.2920.1 0.70 -0.5
2,845,928 - Xcc-8004.2920.1 0.70 -1.1
2,845,928 - Xcc-8004.2920.1 0.70 -0.9
2,846,203 + Xcc-8004.2920.1 0.84 -1.3
2,846,203 + Xcc-8004.2920.1 0.84 -1.1
2,846,203 + Xcc-8004.2920.1 0.84 +0.1
2,846,203 + Xcc-8004.2920.1 0.84 -2.0
2,846,204 - Xcc-8004.2920.1 0.84 -1.7
2,846,204 - Xcc-8004.2920.1 0.84 +3.3
2,846,204 - Xcc-8004.2920.1 0.84 +0.1
2,846,204 - Xcc-8004.2920.1 0.84 +0.9
2,846,204 - Xcc-8004.2920.1 0.84 -0.5
2,846,204 - Xcc-8004.2920.1 0.84 +1.4
2,846,204 - Xcc-8004.2920.1 0.84 +0.4
2,846,296 + Xcc-8004.2920.1 0.89 -1.1
2,846,296 + Xcc-8004.2920.1 0.89 +1.7
2,846,384 - -1.6
2,846,384 - -0.3
2,846,384 - +0.0
2,846,384 - +0.5
2,846,557 + Xcc-8004.2921.1 0.23 -1.4
2,846,557 + Xcc-8004.2921.1 0.23 -0.3
2,846,558 - Xcc-8004.2921.1 0.24 +0.4
2,846,559 + Xcc-8004.2921.1 0.24 +0.7
2,846,559 + Xcc-8004.2921.1 0.24 -2.1
2,846,559 + Xcc-8004.2921.1 0.24 -1.5
2,846,615 + Xcc-8004.2921.1 0.43 +0.1
2,846,615 + Xcc-8004.2921.1 0.43 +0.7
2,846,639 + Xcc-8004.2921.1 0.52 -1.0
2,846,640 - Xcc-8004.2921.1 0.52 -1.5
2,846,774 + +0.5
2,846,775 - -0.6
2,846,817 + -0.1
2,846,817 + -0.5
2,846,818 - -0.7
2,846,818 - +0.1
2,846,818 - -0.0
2,846,898 + -1.3
2,846,899 - +0.3
2,847,142 + Xcc-8004.2922.1 0.36 -1.2
2,847,234 + Xcc-8004.2922.1 0.48 +0.7
2,847,298 + Xcc-8004.2922.1 0.56 -1.7
2,847,298 + Xcc-8004.2922.1 0.56 -0.3
2,847,298 + Xcc-8004.2922.1 0.56 -0.2
2,847,299 - Xcc-8004.2922.1 0.56 -0.6
2,847,299 - Xcc-8004.2922.1 0.56 +0.7
2,847,663 + -0.1
2,847,663 + +0.1
2,847,663 + -1.1
2,847,663 + +0.0
2,847,663 + +0.4
2,847,663 + -1.0
2,847,663 + +0.5
2,847,664 - -2.2
2,847,664 - -0.1
2,847,664 - +0.1
2,847,664 - -0.4
2,847,664 - -0.4
2,847,664 - +1.0
2,847,667 + +0.6
2,847,667 + +0.7
2,847,667 + -0.7
2,847,667 + -0.3
2,847,667 + -0.6
2,847,668 - -0.9
2,847,668 - -0.1
2,847,668 - -2.3
2,847,741 + +0.7
2,847,741 + -1.2
2,847,742 - -0.1
2,847,980 + Xcc-8004.2923.1 0.28 +0.5
2,847,980 + Xcc-8004.2923.1 0.28 +0.3
2,847,980 + Xcc-8004.2923.1 0.28 -0.2
2,847,980 + Xcc-8004.2923.1 0.28 -0.1
2,847,980 + Xcc-8004.2923.1 0.28 +0.6
2,847,980 + Xcc-8004.2923.1 0.28 +0.4
2,847,980 + Xcc-8004.2923.1 0.28 +0.1
2,847,980 + Xcc-8004.2923.1 0.28 -0.0
2,847,981 - Xcc-8004.2923.1 0.28 -0.3
2,847,981 - Xcc-8004.2923.1 0.28 -0.4
2,847,981 - Xcc-8004.2923.1 0.28 -0.5
2,847,981 - Xcc-8004.2923.1 0.28 -0.4
2,848,057 + Xcc-8004.2923.1 0.37 +1.0
2,848,057 + Xcc-8004.2923.1 0.37 +0.6
2,848,057 + Xcc-8004.2923.1 0.37 +1.1
2,848,058 - Xcc-8004.2923.1 0.37 +1.0
2,848,058 - Xcc-8004.2923.1 0.37 -1.1
2,848,058 - Xcc-8004.2923.1 0.37 +0.6
2,848,058 - Xcc-8004.2923.1 0.37 +0.6
2,848,058 - Xcc-8004.2923.1 0.37 +0.5
2,848,058 - Xcc-8004.2923.1 0.37 -0.3
2,848,058 - Xcc-8004.2923.1 0.37 -2.0
2,848,058 - Xcc-8004.2923.1 0.37 +0.1
2,848,143 - Xcc-8004.2923.1 0.46 +0.9
2,848,143 - Xcc-8004.2923.1 0.46 +1.4
2,848,220 + Xcc-8004.2923.1 0.55 -0.7
2,848,220 + Xcc-8004.2923.1 0.55 -0.9
2,848,235 + Xcc-8004.2923.1 0.57 -1.6
2,848,235 + Xcc-8004.2923.1 0.57 +0.6
2,848,235 + Xcc-8004.2923.1 0.57 -0.4
2,848,236 - Xcc-8004.2923.1 0.57 +0.3
2,848,355 + Xcc-8004.2923.1 0.70 -1.1
2,848,355 + Xcc-8004.2923.1 0.70 +0.3
2,848,355 + Xcc-8004.2923.1 0.70 -0.7
2,848,355 + Xcc-8004.2923.1 0.70 +0.3
2,848,355 + Xcc-8004.2923.1 0.70 +0.6
2,848,356 - Xcc-8004.2923.1 0.70 +0.9
2,848,356 - Xcc-8004.2923.1 0.70 -0.3
2,848,356 - Xcc-8004.2923.1 0.70 +0.7
2,848,356 - Xcc-8004.2923.1 0.70 +0.5
2,848,356 - Xcc-8004.2923.1 0.70 -0.9
2,848,490 + Xcc-8004.2923.1 0.85 -0.6
2,848,490 + Xcc-8004.2923.1 0.85 +0.1
2,848,490 + Xcc-8004.2923.1 0.85 +0.8
2,848,490 + Xcc-8004.2923.1 0.85 -0.1
2,848,490 + Xcc-8004.2923.1 0.85 -1.2
2,848,490 + Xcc-8004.2923.1 0.85 -0.8
2,848,490 + Xcc-8004.2923.1 0.85 -1.3
2,848,490 + Xcc-8004.2923.1 0.85 +0.5
2,848,491 - Xcc-8004.2923.1 0.85 -0.2
2,848,491 - Xcc-8004.2923.1 0.85 -1.1
2,848,491 - Xcc-8004.2923.1 0.85 -1.1
2,848,491 - Xcc-8004.2923.1 0.85 +0.1
2,848,491 - Xcc-8004.2923.1 0.85 -1.3
2,848,491 - Xcc-8004.2923.1 0.85 -0.4
2,848,491 - Xcc-8004.2923.1 0.85 +2.0

Or see this region's nucleotide sequence