Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.2918.1 and Xcc-8004.2919.1 are separated by 24 nucleotides Xcc-8004.2919.1 and Xcc-8004.2920.1 are separated by 1 nucleotides Xcc-8004.2920.1 and Xcc-8004.2921.1 overlap by 4 nucleotides Xcc-8004.2921.1 and Xcc-8004.2922.1 are separated by 74 nucleotides
Xcc-8004.2918.1: Xcc-8004.2918.1 - FIG01209813: hypothetical protein, at 2,843,819 to 2,844,358
Xcc-8004.2918.1
Xcc-8004.2919.1: Xcc-8004.2919.1 - FIG01210258: hypothetical protein, at 2,844,383 to 2,844,631
Xcc-8004.2919.1
Xcc-8004.2920.1: Xcc-8004.2920.1 - Ferrous iron transport protein B, at 2,844,633 to 2,846,492
Xcc-8004.2920.1
Xcc-8004.2921.1: Xcc-8004.2921.1 - ferrous iron transport protein, at 2,846,489 to 2,846,779
Xcc-8004.2921.1
Xcc-8004.2922.1: Xcc-8004.2922.1 - Methylglutaconyl-CoA hydratase (EC 4.2.1.18), at 2,846,854 to 2,847,651
Xcc-8004.2922.1
Position (kb) 2844
2845
2846
2847 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 2843.683 kb on - strand at 2843.683 kb on - strand at 2843.683 kb on - strand at 2843.683 kb on - strand at 2843.683 kb on - strand at 2843.826 kb on + strand at 2843.826 kb on + strand at 2844.009 kb on + strand, within Xcc-8004.2918.1 at 2844.009 kb on + strand, within Xcc-8004.2918.1 at 2844.009 kb on + strand, within Xcc-8004.2918.1 at 2844.009 kb on + strand, within Xcc-8004.2918.1 at 2844.009 kb on + strand, within Xcc-8004.2918.1 at 2844.009 kb on + strand, within Xcc-8004.2918.1 at 2844.009 kb on + strand, within Xcc-8004.2918.1 at 2844.009 kb on + strand, within Xcc-8004.2918.1 at 2844.010 kb on - strand, within Xcc-8004.2918.1 at 2844.010 kb on - strand, within Xcc-8004.2918.1 at 2844.010 kb on - strand, within Xcc-8004.2918.1 at 2844.010 kb on - strand, within Xcc-8004.2918.1 at 2844.010 kb on - strand, within Xcc-8004.2918.1 at 2844.010 kb on - strand, within Xcc-8004.2918.1 at 2844.010 kb on - strand, within Xcc-8004.2918.1 at 2844.088 kb on - strand, within Xcc-8004.2918.1 at 2844.088 kb on - strand, within Xcc-8004.2918.1 at 2844.088 kb on - strand, within Xcc-8004.2918.1 at 2844.088 kb on - strand, within Xcc-8004.2918.1 at 2844.135 kb on + strand, within Xcc-8004.2918.1 at 2844.135 kb on + strand, within Xcc-8004.2918.1 at 2844.136 kb on - strand, within Xcc-8004.2918.1 at 2844.222 kb on + strand, within Xcc-8004.2918.1 at 2844.222 kb on + strand, within Xcc-8004.2918.1 at 2844.222 kb on + strand, within Xcc-8004.2918.1 at 2844.223 kb on - strand, within Xcc-8004.2918.1 at 2844.223 kb on - strand, within Xcc-8004.2918.1 at 2844.223 kb on - strand, within Xcc-8004.2918.1 at 2844.264 kb on + strand, within Xcc-8004.2918.1 at 2844.264 kb on + strand, within Xcc-8004.2918.1 at 2844.264 kb on + strand, within Xcc-8004.2918.1 at 2844.264 kb on + strand, within Xcc-8004.2918.1 at 2844.264 kb on + strand, within Xcc-8004.2918.1 at 2844.264 kb on + strand, within Xcc-8004.2918.1 at 2844.265 kb on - strand, within Xcc-8004.2918.1 at 2844.265 kb on - strand, within Xcc-8004.2918.1 at 2844.265 kb on - strand, within Xcc-8004.2918.1 at 2844.265 kb on - strand, within Xcc-8004.2918.1 at 2844.268 kb on + strand, within Xcc-8004.2918.1 at 2844.268 kb on + strand, within Xcc-8004.2918.1 at 2844.268 kb on + strand, within Xcc-8004.2918.1 at 2844.268 kb on + strand, within Xcc-8004.2918.1 at 2844.268 kb on + strand, within Xcc-8004.2918.1 at 2844.269 kb on - strand, within Xcc-8004.2918.1 at 2844.269 kb on - strand, within Xcc-8004.2918.1 at 2844.269 kb on - strand, within Xcc-8004.2918.1 at 2844.269 kb on - strand, within Xcc-8004.2918.1 at 2844.269 kb on - strand, within Xcc-8004.2918.1 at 2844.269 kb on - strand, within Xcc-8004.2918.1 at 2844.270 kb on + strand, within Xcc-8004.2918.1 at 2844.270 kb on + strand, within Xcc-8004.2918.1 at 2844.270 kb on + strand, within Xcc-8004.2918.1 at 2844.270 kb on + strand, within Xcc-8004.2918.1 at 2844.270 kb on + strand, within Xcc-8004.2918.1 at 2844.270 kb on + strand, within Xcc-8004.2918.1 at 2844.271 kb on - strand, within Xcc-8004.2918.1 at 2844.271 kb on - strand, within Xcc-8004.2918.1 at 2844.271 kb on - strand, within Xcc-8004.2918.1 at 2844.271 kb on - strand, within Xcc-8004.2918.1 at 2844.271 kb on - strand, within Xcc-8004.2918.1 at 2844.294 kb on - strand, within Xcc-8004.2918.1 at 2844.362 kb on + strand at 2844.362 kb on + strand at 2844.363 kb on - strand at 2844.363 kb on - strand at 2844.363 kb on - strand at 2844.612 kb on + strand at 2844.612 kb on + strand at 2844.612 kb on + strand at 2844.612 kb on + strand at 2844.613 kb on - strand at 2844.613 kb on - strand at 2844.613 kb on - strand at 2844.613 kb on - strand at 2844.613 kb on - strand at 2844.664 kb on + strand at 2844.665 kb on - strand at 2844.685 kb on + strand at 2844.686 kb on - strand at 2844.703 kb on + strand at 2844.703 kb on + strand at 2844.784 kb on + strand at 2844.784 kb on + strand at 2844.784 kb on + strand at 2844.784 kb on + strand at 2844.784 kb on + strand at 2844.784 kb on + strand at 2844.784 kb on + strand at 2844.784 kb on + strand at 2844.784 kb on + strand at 2844.784 kb on + strand at 2844.785 kb on - strand at 2844.785 kb on - strand at 2844.785 kb on - strand at 2844.785 kb on - strand at 2844.785 kb on - strand at 2844.790 kb on + strand at 2844.790 kb on + strand at 2844.790 kb on + strand at 2844.791 kb on - strand at 2844.791 kb on - strand at 2844.791 kb on - strand at 2844.791 kb on - strand at 2844.791 kb on - strand at 2844.892 kb on + strand, within Xcc-8004.2920.1 at 2844.893 kb on - strand, within Xcc-8004.2920.1 at 2844.893 kb on - strand, within Xcc-8004.2920.1 at 2845.189 kb on + strand, within Xcc-8004.2920.1 at 2845.189 kb on + strand, within Xcc-8004.2920.1 at 2845.190 kb on - strand, within Xcc-8004.2920.1 at 2845.190 kb on - strand, within Xcc-8004.2920.1 at 2845.365 kb on + strand, within Xcc-8004.2920.1 at 2845.372 kb on + strand, within Xcc-8004.2920.1 at 2845.372 kb on + strand, within Xcc-8004.2920.1 at 2845.372 kb on + strand, within Xcc-8004.2920.1 at 2845.373 kb on - strand, within Xcc-8004.2920.1 at 2845.373 kb on - strand, within Xcc-8004.2920.1 at 2845.373 kb on - strand, within Xcc-8004.2920.1 at 2845.774 kb on + strand, within Xcc-8004.2920.1 at 2845.774 kb on + strand, within Xcc-8004.2920.1 at 2845.774 kb on + strand, within Xcc-8004.2920.1 at 2845.774 kb on + strand, within Xcc-8004.2920.1 at 2845.774 kb on + strand, within Xcc-8004.2920.1 at 2845.775 kb on - strand, within Xcc-8004.2920.1 at 2845.775 kb on - strand, within Xcc-8004.2920.1 at 2845.775 kb on - strand, within Xcc-8004.2920.1 at 2845.775 kb on - strand, within Xcc-8004.2920.1 at 2845.927 kb on + strand, within Xcc-8004.2920.1 at 2845.927 kb on + strand, within Xcc-8004.2920.1 at 2845.928 kb on - strand, within Xcc-8004.2920.1 at 2845.928 kb on - strand, within Xcc-8004.2920.1 at 2845.928 kb on - strand, within Xcc-8004.2920.1 at 2845.928 kb on - strand, within Xcc-8004.2920.1 at 2845.928 kb on - strand, within Xcc-8004.2920.1 at 2845.928 kb on - strand, within Xcc-8004.2920.1 at 2845.928 kb on - strand, within Xcc-8004.2920.1 at 2845.928 kb on - strand, within Xcc-8004.2920.1 at 2845.928 kb on - strand, within Xcc-8004.2920.1 at 2845.928 kb on - strand, within Xcc-8004.2920.1 at 2845.928 kb on - strand, within Xcc-8004.2920.1 at 2845.928 kb on - strand, within Xcc-8004.2920.1 at 2846.203 kb on + strand, within Xcc-8004.2920.1 at 2846.203 kb on + strand, within Xcc-8004.2920.1 at 2846.203 kb on + strand, within Xcc-8004.2920.1 at 2846.203 kb on + strand, within Xcc-8004.2920.1 at 2846.204 kb on - strand, within Xcc-8004.2920.1 at 2846.204 kb on - strand, within Xcc-8004.2920.1 at 2846.204 kb on - strand, within Xcc-8004.2920.1 at 2846.204 kb on - strand, within Xcc-8004.2920.1 at 2846.204 kb on - strand, within Xcc-8004.2920.1 at 2846.204 kb on - strand, within Xcc-8004.2920.1 at 2846.204 kb on - strand, within Xcc-8004.2920.1 at 2846.296 kb on + strand, within Xcc-8004.2920.1 at 2846.296 kb on + strand, within Xcc-8004.2920.1 at 2846.384 kb on - strand at 2846.384 kb on - strand at 2846.384 kb on - strand at 2846.384 kb on - strand at 2846.557 kb on + strand, within Xcc-8004.2921.1 at 2846.557 kb on + strand, within Xcc-8004.2921.1 at 2846.558 kb on - strand, within Xcc-8004.2921.1 at 2846.559 kb on + strand, within Xcc-8004.2921.1 at 2846.559 kb on + strand, within Xcc-8004.2921.1 at 2846.559 kb on + strand, within Xcc-8004.2921.1 at 2846.615 kb on + strand, within Xcc-8004.2921.1 at 2846.615 kb on + strand, within Xcc-8004.2921.1 at 2846.639 kb on + strand, within Xcc-8004.2921.1 at 2846.640 kb on - strand, within Xcc-8004.2921.1 at 2846.774 kb on + strand at 2846.775 kb on - strand at 2846.817 kb on + strand at 2846.817 kb on + strand at 2846.818 kb on - strand at 2846.818 kb on - strand at 2846.818 kb on - strand at 2846.898 kb on + strand at 2846.899 kb on - strand at 2847.142 kb on + strand, within Xcc-8004.2922.1 at 2847.234 kb on + strand, within Xcc-8004.2922.1 at 2847.298 kb on + strand, within Xcc-8004.2922.1 at 2847.298 kb on + strand, within Xcc-8004.2922.1 at 2847.298 kb on + strand, within Xcc-8004.2922.1 at 2847.299 kb on - strand, within Xcc-8004.2922.1 at 2847.299 kb on - strand, within Xcc-8004.2922.1
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 2,843,683 - +0.5 2,843,683 - -0.3 2,843,683 - +0.1 2,843,683 - +1.0 2,843,683 - +0.8 2,843,826 + -0.4 2,843,826 + +0.1 2,844,009 + Xcc-8004.2918.1 0.35 -1.1 2,844,009 + Xcc-8004.2918.1 0.35 +0.4 2,844,009 + Xcc-8004.2918.1 0.35 +0.1 2,844,009 + Xcc-8004.2918.1 0.35 -0.7 2,844,009 + Xcc-8004.2918.1 0.35 +0.8 2,844,009 + Xcc-8004.2918.1 0.35 +0.4 2,844,009 + Xcc-8004.2918.1 0.35 +0.4 2,844,009 + Xcc-8004.2918.1 0.35 -0.0 2,844,010 - Xcc-8004.2918.1 0.35 -0.0 2,844,010 - Xcc-8004.2918.1 0.35 -0.4 2,844,010 - Xcc-8004.2918.1 0.35 -0.3 2,844,010 - Xcc-8004.2918.1 0.35 -1.2 2,844,010 - Xcc-8004.2918.1 0.35 +0.2 2,844,010 - Xcc-8004.2918.1 0.35 +1.0 2,844,010 - Xcc-8004.2918.1 0.35 -1.7 2,844,088 - Xcc-8004.2918.1 0.50 +0.5 2,844,088 - Xcc-8004.2918.1 0.50 +1.7 2,844,088 - Xcc-8004.2918.1 0.50 +1.2 2,844,088 - Xcc-8004.2918.1 0.50 +0.4 2,844,135 + Xcc-8004.2918.1 0.59 -0.0 2,844,135 + Xcc-8004.2918.1 0.59 -0.1 2,844,136 - Xcc-8004.2918.1 0.59 -0.1 2,844,222 + Xcc-8004.2918.1 0.75 -0.5 2,844,222 + Xcc-8004.2918.1 0.75 -0.6 2,844,222 + Xcc-8004.2918.1 0.75 +0.6 2,844,223 - Xcc-8004.2918.1 0.75 -0.5 2,844,223 - Xcc-8004.2918.1 0.75 -0.4 2,844,223 - Xcc-8004.2918.1 0.75 -1.7 2,844,264 + Xcc-8004.2918.1 0.82 +0.6 2,844,264 + Xcc-8004.2918.1 0.82 +0.0 2,844,264 + Xcc-8004.2918.1 0.82 -0.6 2,844,264 + Xcc-8004.2918.1 0.82 +0.0 2,844,264 + Xcc-8004.2918.1 0.82 -1.5 2,844,264 + Xcc-8004.2918.1 0.82 +0.2 2,844,265 - Xcc-8004.2918.1 0.83 +0.7 2,844,265 - Xcc-8004.2918.1 0.83 +0.9 2,844,265 - Xcc-8004.2918.1 0.83 -1.3 2,844,265 - Xcc-8004.2918.1 0.83 -0.2 2,844,268 + Xcc-8004.2918.1 0.83 +0.2 2,844,268 + Xcc-8004.2918.1 0.83 -0.6 2,844,268 + Xcc-8004.2918.1 0.83 +0.6 2,844,268 + Xcc-8004.2918.1 0.83 +0.3 2,844,268 + Xcc-8004.2918.1 0.83 +0.4 2,844,269 - Xcc-8004.2918.1 0.83 -1.1 2,844,269 - Xcc-8004.2918.1 0.83 +0.5 2,844,269 - Xcc-8004.2918.1 0.83 +1.1 2,844,269 - Xcc-8004.2918.1 0.83 +0.8 2,844,269 - Xcc-8004.2918.1 0.83 +0.7 2,844,269 - Xcc-8004.2918.1 0.83 -0.2 2,844,270 + Xcc-8004.2918.1 0.84 -0.1 2,844,270 + Xcc-8004.2918.1 0.84 +0.7 2,844,270 + Xcc-8004.2918.1 0.84 -1.7 2,844,270 + Xcc-8004.2918.1 0.84 -0.3 2,844,270 + Xcc-8004.2918.1 0.84 -0.1 2,844,270 + Xcc-8004.2918.1 0.84 -0.1 2,844,271 - Xcc-8004.2918.1 0.84 -0.2 2,844,271 - Xcc-8004.2918.1 0.84 +0.4 2,844,271 - Xcc-8004.2918.1 0.84 +0.5 2,844,271 - Xcc-8004.2918.1 0.84 -0.4 2,844,271 - Xcc-8004.2918.1 0.84 -0.1 2,844,294 - Xcc-8004.2918.1 0.88 -0.7 2,844,362 + +0.0 2,844,362 + -0.5 2,844,363 - -1.1 2,844,363 - +0.6 2,844,363 - -0.7 2,844,612 + -1.6 2,844,612 + +3.3 2,844,612 + -0.0 2,844,612 + -0.6 2,844,613 - -0.3 2,844,613 - -2.3 2,844,613 - +2.7 2,844,613 - -1.4 2,844,613 - -0.3 2,844,664 + -1.5 2,844,665 - -0.0 2,844,685 + -1.9 2,844,686 - -1.5 2,844,703 + +1.1 2,844,703 + -1.0 2,844,784 + +0.4 2,844,784 + -0.3 2,844,784 + +1.7 2,844,784 + +0.4 2,844,784 + -2.3 2,844,784 + -0.0 2,844,784 + -0.9 2,844,784 + +1.0 2,844,784 + +0.7 2,844,784 + -1.7 2,844,785 - +0.1 2,844,785 - -0.1 2,844,785 - -0.7 2,844,785 - -2.4 2,844,785 - -1.9 2,844,790 + +0.7 2,844,790 + -1.0 2,844,790 + -1.1 2,844,791 - -1.3 2,844,791 - -0.3 2,844,791 - -1.5 2,844,791 - -0.9 2,844,791 - +0.3 2,844,892 + Xcc-8004.2920.1 0.14 -0.3 2,844,893 - Xcc-8004.2920.1 0.14 +1.0 2,844,893 - Xcc-8004.2920.1 0.14 -1.6 2,845,189 + Xcc-8004.2920.1 0.30 -1.5 2,845,189 + Xcc-8004.2920.1 0.30 -0.4 2,845,190 - Xcc-8004.2920.1 0.30 +0.1 2,845,190 - Xcc-8004.2920.1 0.30 -1.9 2,845,365 + Xcc-8004.2920.1 0.39 -2.1 2,845,372 + Xcc-8004.2920.1 0.40 +0.5 2,845,372 + Xcc-8004.2920.1 0.40 -0.9 2,845,372 + Xcc-8004.2920.1 0.40 -1.0 2,845,373 - Xcc-8004.2920.1 0.40 -1.7 2,845,373 - Xcc-8004.2920.1 0.40 -1.5 2,845,373 - Xcc-8004.2920.1 0.40 +0.7 2,845,774 + Xcc-8004.2920.1 0.61 -1.1 2,845,774 + Xcc-8004.2920.1 0.61 -0.4 2,845,774 + Xcc-8004.2920.1 0.61 -1.5 2,845,774 + Xcc-8004.2920.1 0.61 -1.3 2,845,774 + Xcc-8004.2920.1 0.61 +0.7 2,845,775 - Xcc-8004.2920.1 0.61 -1.1 2,845,775 - Xcc-8004.2920.1 0.61 -0.9 2,845,775 - Xcc-8004.2920.1 0.61 -0.2 2,845,775 - Xcc-8004.2920.1 0.61 -0.1 2,845,927 + Xcc-8004.2920.1 0.70 +1.7 2,845,927 + Xcc-8004.2920.1 0.70 +0.5 2,845,928 - Xcc-8004.2920.1 0.70 -0.3 2,845,928 - Xcc-8004.2920.1 0.70 -0.0 2,845,928 - Xcc-8004.2920.1 0.70 -0.9 2,845,928 - Xcc-8004.2920.1 0.70 -2.0 2,845,928 - Xcc-8004.2920.1 0.70 +1.3 2,845,928 - Xcc-8004.2920.1 0.70 -1.8 2,845,928 - Xcc-8004.2920.1 0.70 -1.1 2,845,928 - Xcc-8004.2920.1 0.70 -1.1 2,845,928 - Xcc-8004.2920.1 0.70 +0.4 2,845,928 - Xcc-8004.2920.1 0.70 -0.5 2,845,928 - Xcc-8004.2920.1 0.70 -1.1 2,845,928 - Xcc-8004.2920.1 0.70 -0.9 2,846,203 + Xcc-8004.2920.1 0.84 -1.3 2,846,203 + Xcc-8004.2920.1 0.84 -1.1 2,846,203 + Xcc-8004.2920.1 0.84 +0.1 2,846,203 + Xcc-8004.2920.1 0.84 -2.0 2,846,204 - Xcc-8004.2920.1 0.84 -1.7 2,846,204 - Xcc-8004.2920.1 0.84 +3.3 2,846,204 - Xcc-8004.2920.1 0.84 +0.1 2,846,204 - Xcc-8004.2920.1 0.84 +0.9 2,846,204 - Xcc-8004.2920.1 0.84 -0.5 2,846,204 - Xcc-8004.2920.1 0.84 +1.4 2,846,204 - Xcc-8004.2920.1 0.84 +0.4 2,846,296 + Xcc-8004.2920.1 0.89 -1.1 2,846,296 + Xcc-8004.2920.1 0.89 +1.7 2,846,384 - -1.6 2,846,384 - -0.3 2,846,384 - +0.0 2,846,384 - +0.5 2,846,557 + Xcc-8004.2921.1 0.23 -1.4 2,846,557 + Xcc-8004.2921.1 0.23 -0.3 2,846,558 - Xcc-8004.2921.1 0.24 +0.4 2,846,559 + Xcc-8004.2921.1 0.24 +0.7 2,846,559 + Xcc-8004.2921.1 0.24 -2.1 2,846,559 + Xcc-8004.2921.1 0.24 -1.5 2,846,615 + Xcc-8004.2921.1 0.43 +0.1 2,846,615 + Xcc-8004.2921.1 0.43 +0.7 2,846,639 + Xcc-8004.2921.1 0.52 -1.0 2,846,640 - Xcc-8004.2921.1 0.52 -1.5 2,846,774 + +0.5 2,846,775 - -0.6 2,846,817 + -0.1 2,846,817 + -0.5 2,846,818 - -0.7 2,846,818 - +0.1 2,846,818 - -0.0 2,846,898 + -1.3 2,846,899 - +0.3 2,847,142 + Xcc-8004.2922.1 0.36 -1.2 2,847,234 + Xcc-8004.2922.1 0.48 +0.7 2,847,298 + Xcc-8004.2922.1 0.56 -1.7 2,847,298 + Xcc-8004.2922.1 0.56 -0.3 2,847,298 + Xcc-8004.2922.1 0.56 -0.2 2,847,299 - Xcc-8004.2922.1 0.56 -0.6 2,847,299 - Xcc-8004.2922.1 0.56 +0.7
Or see this region's nucleotide sequence