Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2869.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
2,784,599	+		Xcc-8004.2868.1	0.79	+0.3
2,785,675	-		Xcc-8004.2869.1	0.11	+0.1
2,785,680	+		Xcc-8004.2869.1	0.11	-0.2
2,785,680	+		Xcc-8004.2869.1	0.11	-0.9
2,785,716	+		Xcc-8004.2869.1	0.13	+0.7
2,785,780	-		Xcc-8004.2869.1	0.16	-0.9
2,785,842	+		Xcc-8004.2869.1	0.18	+0.4
2,785,935	+		Xcc-8004.2869.1	0.22	-0.8
2,786,330	+		Xcc-8004.2869.1	0.40	-0.4
2,786,330	+		Xcc-8004.2869.1	0.40	-0.1
2,786,330	+		Xcc-8004.2869.1	0.40	-0.9
2,786,331	-		Xcc-8004.2869.1	0.40	-0.2
2,786,331	-		Xcc-8004.2869.1	0.40	-0.1
2,786,388	+		Xcc-8004.2869.1	0.42	-0.3
2,787,556	+				-0.1
2,787,684	+				-1.0
2,787,684	+				+1.7
2,787,685	-				+0.6
2,787,685	-				+0.5
2,787,685	-				+1.0
2,787,924	+				+0.1
2,787,984	+				+0.1
2,787,995	+				+0.4
2,787,995	+				+0.6
2,788,010	+				+0.6
2,788,016	+				-0.9
2,788,016	+				-0.7
2,788,016	+				+0.7
2,788,016	+				-0.1
2,788,016	+				+0.1
2,788,016	+				+0.1
2,788,016	+				+0.8
2,788,016	+				+0.6
2,788,016	+				-0.8
2,788,017	-				-0.8
2,788,017	-				+0.1
2,788,017	-				-0.5
2,788,017	-				-1.0
2,788,017	-				+0.3
2,788,017	-				-0.1
2,788,017	-				+0.0
2,788,017	-				+0.3
2,788,020	+				-1.5
2,788,020	+				+0.1
2,788,021	-				-0.0
2,788,042	+				+0.7
2,788,043	-				+0.6
2,788,043	-				-0.2
2,788,070	-				-0.4
2,788,078	+				-0.9
2,788,078	+				-0.2
2,788,078	+				-0.1
2,788,079	-				+0.5
2,788,079	-				-1.5
2,788,079	-				+1.2
2,788,079	-				+0.3
2,788,079	-				-2.2
2,788,079	-				-0.8
2,788,136	+				-0.8
2,788,172	+				-0.1
2,788,172	+				-0.9
2,788,172	+				+1.1
2,788,172	+				-1.2
2,788,173	-				+0.3
2,788,343	+				-0.3
2,788,343	+				-0.3
2,788,343	+				-1.8
2,788,344	-				+0.6
2,788,344	-				+0.7
2,788,344	-				+0.3
2,788,370	-				-0.3
2,788,439	+		Xcc-8004.2871.1	0.13	-1.5