Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2796.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
2,707,264	+				+0.4
2,707,264	+				-0.5
2,707,264	+				+0.7
2,707,264	+				+0.2
2,707,265	-				+0.0
2,707,265	-				+1.0
2,707,394	-		Xcc-8004.2792.1	0.18	+0.6
2,707,402	+		Xcc-8004.2792.1	0.23	-0.3
2,707,402	+		Xcc-8004.2792.1	0.23	+1.0
2,707,402	+		Xcc-8004.2792.1	0.23	-0.6
2,707,402	+		Xcc-8004.2792.1	0.23	+0.2
2,707,402	+		Xcc-8004.2792.1	0.23	+1.3
2,707,402	-		Xcc-8004.2792.1	0.23	-0.3
2,707,403	-		Xcc-8004.2792.1	0.24	+0.2
2,707,403	-		Xcc-8004.2792.1	0.24	+1.1
2,707,403	-		Xcc-8004.2792.1	0.24	-0.6
2,707,403	-		Xcc-8004.2792.1	0.24	-0.0
2,707,403	-		Xcc-8004.2792.1	0.24	-0.8
2,707,403	-		Xcc-8004.2792.1	0.24	-0.9
2,707,403	-		Xcc-8004.2792.1	0.24	+0.0
2,707,403	-		Xcc-8004.2792.1	0.24	+1.1
2,707,403	-		Xcc-8004.2792.1	0.24	-1.0
2,707,403	-		Xcc-8004.2792.1	0.24	+0.1
2,707,406	+		Xcc-8004.2792.1	0.26	-0.3
2,707,406	+		Xcc-8004.2792.1	0.26	+0.8
2,707,406	+		Xcc-8004.2792.1	0.26	-1.8
2,707,406	+		Xcc-8004.2792.1	0.26	+0.7
2,707,406	+		Xcc-8004.2792.1	0.26	+0.7
2,707,406	+		Xcc-8004.2792.1	0.26	-1.2
2,707,407	-		Xcc-8004.2792.1	0.27	-0.5
2,707,407	-		Xcc-8004.2792.1	0.27	-1.2
2,707,407	-		Xcc-8004.2792.1	0.27	-1.1
2,707,407	-		Xcc-8004.2792.1	0.27	+0.7
2,707,407	-		Xcc-8004.2792.1	0.27	+0.6
2,707,407	-		Xcc-8004.2792.1	0.27	+0.2
2,707,407	-		Xcc-8004.2792.1	0.27	+1.3
2,707,407	-		Xcc-8004.2792.1	0.27	+1.1
2,707,415	-		Xcc-8004.2792.1	0.32	-0.0
2,707,415	-		Xcc-8004.2792.1	0.32	-0.3
2,707,504	+				-0.0
2,707,504	+				+0.5
2,707,504	+				-0.4
2,707,504	+				-1.0
2,707,504	+				+0.6
2,707,504	+				-0.7
2,707,504	+				-0.3
2,707,505	-				-0.2
2,707,505	-				-0.6
2,707,505	-				+0.4
2,707,505	-				-0.7
2,707,505	-				-0.6
2,707,505	-				-0.9
2,707,505	-				+0.1
2,707,505	-				+0.0
2,707,505	-				-0.9
2,707,505	-				+0.5
2,707,505	-				-0.5
2,707,505	-				-0.7
2,707,505	-				-0.1
2,707,505	-				+0.1
2,707,505	-				+0.2
2,707,523	-				-1.1
2,707,523	-				-1.6
2,707,534	+				-0.8
2,707,535	-				+0.7
2,707,753	-		Xcc-8004.2793.1	0.61	+0.8
2,707,753	-		Xcc-8004.2793.1	0.61	-1.0
2,707,768	+		Xcc-8004.2793.1	0.64	-1.2
2,707,768	+		Xcc-8004.2793.1	0.64	+0.4
2,707,768	+		Xcc-8004.2793.1	0.64	+0.1
2,707,768	+		Xcc-8004.2793.1	0.64	+0.6
2,707,769	-		Xcc-8004.2793.1	0.65	-1.0
2,707,769	-		Xcc-8004.2793.1	0.65	-1.0
2,707,774	+		Xcc-8004.2793.1	0.66	+0.1
2,707,775	-		Xcc-8004.2793.1	0.66	-0.1
2,707,775	-		Xcc-8004.2793.1	0.66	+0.4
2,707,775	-		Xcc-8004.2793.1	0.66	+0.2
2,707,775	-		Xcc-8004.2793.1	0.66	-1.7
2,707,775	-		Xcc-8004.2793.1	0.66	-0.5
2,707,775	-		Xcc-8004.2793.1	0.66	-0.2
2,707,775	-		Xcc-8004.2793.1	0.66	-0.3
2,707,775	-		Xcc-8004.2793.1	0.66	-1.6
2,707,928	+				-0.2
2,707,928	+				-0.4
2,707,928	+				+0.4
2,707,928	+				+0.2
2,707,928	+				-0.9
2,707,928	+				-0.8
2,707,928	+				+0.5
2,707,928	+				+2.7
2,707,928	+				+0.2
2,707,928	+				+1.7
2,707,928	+				-0.6
2,707,928	+				+0.4
2,707,928	+				+1.6
2,707,928	+				+1.6
2,707,928	+				+1.0
2,707,928	+				-0.2
2,707,928	+				+0.7
2,707,928	+				-0.3
2,707,928	+				-0.4
2,707,928	+				-1.9
2,707,929	-				-1.1
2,707,929	-				+0.2
2,707,929	-				-0.4
2,707,929	-				+0.5
2,707,929	-				+0.9
2,707,929	-				-0.3
2,707,929	-				-0.9
2,707,929	-				-0.5
2,707,929	-				+0.8
2,707,929	-				+1.2
2,707,929	-				-1.2
2,707,929	-				-0.5
2,707,929	-				-0.2
2,707,929	-				+0.5
2,707,929	-				-0.2
2,707,929	-				-0.2
2,707,929	-				-0.5
2,707,929	-				+0.1
2,707,929	-				-0.8
2,707,929	-				-0.5
2,708,040	+		Xcc-8004.2795.1	0.40	+1.0
2,708,040	+		Xcc-8004.2795.1	0.40	-1.0
2,708,040	+		Xcc-8004.2795.1	0.40	+0.3
2,708,040	+		Xcc-8004.2795.1	0.40	-0.5
2,708,041	-		Xcc-8004.2795.1	0.40	+0.6
2,708,041	-		Xcc-8004.2795.1	0.40	-0.6
2,708,041	-		Xcc-8004.2795.1	0.40	-1.3
2,708,041	-		Xcc-8004.2795.1	0.40	-1.1
2,708,193	+				-0.1
2,708,193	+				+0.2
2,708,194	-				-0.1
2,708,194	-				+0.2
2,708,349	+		Xcc-8004.2796.1	0.23	+0.1
2,708,349	+		Xcc-8004.2796.1	0.23	+1.1
2,708,349	+		Xcc-8004.2796.1	0.23	-0.9
2,708,349	+		Xcc-8004.2796.1	0.23	-0.6
2,708,349	+		Xcc-8004.2796.1	0.23	+0.7
2,708,350	-		Xcc-8004.2796.1	0.24	-1.6
2,708,350	-		Xcc-8004.2796.1	0.24	+1.0
2,708,622	+		Xcc-8004.2796.1	0.72	+0.1
2,708,622	+		Xcc-8004.2796.1	0.72	+1.1
2,708,622	+		Xcc-8004.2796.1	0.72	+0.4
2,708,622	+		Xcc-8004.2796.1	0.72	-0.5
2,708,623	-		Xcc-8004.2796.1	0.72	-1.5
2,708,623	-		Xcc-8004.2796.1	0.72	+0.5
2,708,623	-		Xcc-8004.2796.1	0.72	+1.5
2,708,623	-		Xcc-8004.2796.1	0.72	+1.5
2,708,623	-		Xcc-8004.2796.1	0.72	+0.1
2,708,682	+		Xcc-8004.2796.1	0.82	-0.5
2,708,682	+		Xcc-8004.2796.1	0.82	+0.9
2,708,815	+				-0.4
2,708,815	+				+0.1
2,708,815	+				-0.1
2,708,827	+				+0.6
2,708,828	-				-0.1
2,709,483	-				+0.4
2,709,483	-				-1.9
2,709,570	-				-0.0
2,709,570	-				+1.3
2,709,570	-				-0.5
2,709,575	+				+0.0
2,709,576	-				+0.7
2,709,576	-				+0.5
2,709,591	+				+0.5
2,709,591	+				-0.3
2,709,591	+				+0.2
2,709,591	+				+0.3
2,709,591	+				+1.0
2,709,591	+				-0.1
2,709,591	+				+0.1
2,709,592	-				+0.7
2,709,592	-				-0.5
2,709,592	-				-1.2
2,709,592	-				+1.6
2,709,592	-				+0.5
2,709,592	-				+0.5
2,709,592	-				+0.2
2,709,592	-				-2.0
2,709,592	-				-0.4
2,709,592	-				-0.1
2,709,592	-				-0.3