Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2785.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
2,697,303	+				+0.1
2,697,303	+				-1.3
2,697,303	+				-0.4
2,697,303	+				+1.3
2,697,303	+				-0.3
2,697,303	+				-1.6
2,697,303	+				+0.7
2,697,303	+				+0.5
2,697,303	+				-1.5
2,697,303	+				+0.6
2,697,303	+				+1.1
2,697,303	+				+0.1
2,697,303	+				+0.4
2,697,303	+				-1.8
2,697,303	+				+1.7
2,697,303	+				-1.2
2,697,303	+				+0.5
2,697,303	+				+1.0
2,697,304	-				+1.7
2,697,304	-				+0.7
2,697,304	-				+1.0
2,697,304	-				-1.2
2,697,304	-				+0.4
2,697,304	-				+0.4
2,697,304	-				+0.5
2,697,304	-				+0.7
2,697,304	-				-1.1
2,697,304	-				-1.1
2,697,304	-				+0.0
2,697,304	-				+1.1
2,697,304	-				+1.0
2,697,304	-				-0.6
2,697,304	-				-1.6
2,697,304	-				-1.5
2,697,305	+				-0.5
2,697,305	+				+0.2
2,697,305	+				-0.1
2,697,305	+				-1.3
2,697,306	-				+0.5
2,697,306	-				-1.5
2,697,306	-				-0.7
2,697,306	-				-0.2
2,697,306	-				+1.0
2,697,438	+		Xcc-8004.2784.1	0.11	-0.9
2,697,438	+		Xcc-8004.2784.1	0.11	-0.0
2,697,438	+		Xcc-8004.2784.1	0.11	+1.0
2,697,439	-		Xcc-8004.2784.1	0.11	-1.9
2,697,444	+		Xcc-8004.2784.1	0.11	-0.6
2,697,444	+		Xcc-8004.2784.1	0.11	+0.7
2,697,445	-		Xcc-8004.2784.1	0.11	+0.0
2,697,445	-		Xcc-8004.2784.1	0.11	+0.5
2,697,490	+		Xcc-8004.2784.1	0.17	+0.2
2,697,490	+		Xcc-8004.2784.1	0.17	+1.9
2,697,491	-		Xcc-8004.2784.1	0.17	-0.2
2,697,491	-		Xcc-8004.2784.1	0.17	-0.8
2,697,491	-		Xcc-8004.2784.1	0.17	+0.1
2,697,491	-		Xcc-8004.2784.1	0.17	+0.2
2,697,491	-		Xcc-8004.2784.1	0.17	-2.0
2,697,491	-		Xcc-8004.2784.1	0.17	-1.8
2,697,491	-		Xcc-8004.2784.1	0.17	-1.5
2,697,491	-		Xcc-8004.2784.1	0.17	-0.7
2,697,491	-		Xcc-8004.2784.1	0.17	+0.8
2,697,685	-		Xcc-8004.2784.1	0.42	+0.3
2,697,685	-		Xcc-8004.2784.1	0.42	-0.9
2,697,694	+		Xcc-8004.2784.1	0.43	-0.6
2,697,694	+		Xcc-8004.2784.1	0.43	-0.1
2,697,694	+		Xcc-8004.2784.1	0.43	-0.8
2,697,694	+		Xcc-8004.2784.1	0.43	-0.7
2,697,695	-		Xcc-8004.2784.1	0.43	-2.0
2,697,991	-		Xcc-8004.2784.1	0.81	-1.1
2,698,029	+		Xcc-8004.2784.1	0.86	-0.1
2,698,120	+				-2.4
2,698,120	+				-0.1
2,698,121	-				+0.2
2,698,338	+		Xcc-8004.2785.1	0.23	-2.3
2,698,338	+		Xcc-8004.2785.1	0.23	-0.7
2,698,338	+		Xcc-8004.2785.1	0.23	-1.1
2,698,338	+		Xcc-8004.2785.1	0.23	-1.1
2,698,338	+		Xcc-8004.2785.1	0.23	-1.0
2,698,338	+		Xcc-8004.2785.1	0.23	-0.3
2,698,339	-		Xcc-8004.2785.1	0.23	-0.1
2,698,339	-		Xcc-8004.2785.1	0.23	-0.5
2,698,339	-		Xcc-8004.2785.1	0.23	-0.5
2,698,339	-		Xcc-8004.2785.1	0.23	+0.1
2,698,339	-		Xcc-8004.2785.1	0.23	-0.3
2,698,339	-		Xcc-8004.2785.1	0.23	+1.2
2,698,339	-		Xcc-8004.2785.1	0.23	+0.3
2,698,339	-		Xcc-8004.2785.1	0.23	+0.6
2,698,538	+		Xcc-8004.2785.1	0.52	+0.9
2,698,539	-		Xcc-8004.2785.1	0.52	-1.5
2,698,866	+				+1.0
2,698,867	-				+1.4
2,699,302	+		Xcc-8004.2786.1	0.38	-0.6
2,699,302	+		Xcc-8004.2786.1	0.38	-1.3
2,699,302	+		Xcc-8004.2786.1	0.38	+0.2
2,699,302	+		Xcc-8004.2786.1	0.38	-0.8
2,699,302	+		Xcc-8004.2786.1	0.38	+0.7
2,699,303	-		Xcc-8004.2786.1	0.38	+0.1
2,699,303	-		Xcc-8004.2786.1	0.38	-0.2
2,699,303	-		Xcc-8004.2786.1	0.38	+0.4
2,699,303	-		Xcc-8004.2786.1	0.38	+0.6
2,699,303	-		Xcc-8004.2786.1	0.38	+0.6
2,699,303	-		Xcc-8004.2786.1	0.38	-1.6
2,699,303	-		Xcc-8004.2786.1	0.38	+0.6
2,699,303	-		Xcc-8004.2786.1	0.38	+0.4
2,699,303	-		Xcc-8004.2786.1	0.38	-0.5
2,699,303	-		Xcc-8004.2786.1	0.38	-1.0
2,699,303	-		Xcc-8004.2786.1	0.38	+0.2
2,699,379	+		Xcc-8004.2786.1	0.44	-0.8
2,699,379	+		Xcc-8004.2786.1	0.44	-0.2
2,699,379	+		Xcc-8004.2786.1	0.44	-0.1
2,699,380	-		Xcc-8004.2786.1	0.45	-0.4
2,699,851	-		Xcc-8004.2786.1	0.87	-0.8