Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.268.1 and Xcc-8004.269.1 are separated by 88 nucleotides Xcc-8004.269.1 and Xcc-8004.270.1 are separated by 109 nucleotides Xcc-8004.270.1 and Xcc-8004.271.1 are separated by 17 nucleotides
Xcc-8004.268.1: Xcc-8004.268.1 - FIG01210356: hypothetical protein, at 259,728 to 260,150
Xcc-8004.268.1
Xcc-8004.269.1: Xcc-8004.269.1 - FIG136845: Rhodanese-related sulfurtransferase, at 260,239 to 260,676
Xcc-8004.269.1
Xcc-8004.270.1: Xcc-8004.270.1 - Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state), at 260,786 to 261,298
Xcc-8004.270.1
Xcc-8004.271.1: Xcc-8004.271.1 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94), at 261,316 to 262,341
Xcc-8004.271.1
Position (kb) 260
261
262 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 259.839 kb on + strand, within Xcc-8004.268.1 at 259.839 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.899 kb on + strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.900 kb on - strand, within Xcc-8004.268.1 at 259.942 kb on - strand, within Xcc-8004.268.1 at 260.042 kb on + strand, within Xcc-8004.268.1 at 260.042 kb on + strand, within Xcc-8004.268.1 at 260.042 kb on + strand, within Xcc-8004.268.1 at 260.043 kb on - strand, within Xcc-8004.268.1 at 260.043 kb on - strand, within Xcc-8004.268.1 at 260.043 kb on - strand, within Xcc-8004.268.1 at 260.043 kb on - strand, within Xcc-8004.268.1 at 260.043 kb on - strand, within Xcc-8004.268.1 at 260.148 kb on + strand at 260.148 kb on + strand at 260.148 kb on + strand at 260.149 kb on - strand at 260.149 kb on - strand at 260.191 kb on - strand at 260.191 kb on - strand at 260.191 kb on - strand at 260.608 kb on + strand, within Xcc-8004.269.1 at 260.608 kb on + strand, within Xcc-8004.269.1 at 260.608 kb on + strand, within Xcc-8004.269.1 at 260.608 kb on + strand, within Xcc-8004.269.1 at 260.608 kb on + strand, within Xcc-8004.269.1 at 260.609 kb on - strand, within Xcc-8004.269.1 at 260.609 kb on - strand, within Xcc-8004.269.1 at 260.609 kb on - strand, within Xcc-8004.269.1 at 260.723 kb on - strand at 260.781 kb on + strand at 260.782 kb on - strand at 260.782 kb on - strand at 260.782 kb on - strand at 260.782 kb on - strand at 260.782 kb on - strand at 260.864 kb on + strand, within Xcc-8004.270.1 at 260.865 kb on - strand, within Xcc-8004.270.1 at 261.035 kb on + strand, within Xcc-8004.270.1 at 261.035 kb on + strand, within Xcc-8004.270.1 at 261.036 kb on - strand, within Xcc-8004.270.1 at 261.036 kb on - strand, within Xcc-8004.270.1 at 261.036 kb on - strand, within Xcc-8004.270.1 at 261.140 kb on + strand, within Xcc-8004.270.1 at 261.140 kb on + strand, within Xcc-8004.270.1 at 261.140 kb on + strand, within Xcc-8004.270.1 at 261.140 kb on + strand, within Xcc-8004.270.1 at 261.140 kb on + strand, within Xcc-8004.270.1 at 261.140 kb on + strand, within Xcc-8004.270.1 at 261.141 kb on - strand, within Xcc-8004.270.1 at 261.141 kb on - strand, within Xcc-8004.270.1 at 261.141 kb on - strand, within Xcc-8004.270.1 at 261.141 kb on - strand, within Xcc-8004.270.1 at 261.194 kb on + strand, within Xcc-8004.270.1 at 261.194 kb on + strand, within Xcc-8004.270.1 at 261.195 kb on - strand, within Xcc-8004.270.1 at 261.195 kb on - strand, within Xcc-8004.270.1 at 261.195 kb on - strand, within Xcc-8004.270.1 at 261.224 kb on + strand, within Xcc-8004.270.1 at 261.224 kb on + strand, within Xcc-8004.270.1 at 261.224 kb on + strand, within Xcc-8004.270.1 at 261.225 kb on - strand, within Xcc-8004.270.1 at 261.225 kb on - strand, within Xcc-8004.270.1 at 261.296 kb on + strand at 261.296 kb on + strand at 261.297 kb on - strand at 261.297 kb on - strand at 261.297 kb on - strand at 261.473 kb on - strand, within Xcc-8004.271.1 at 261.473 kb on - strand, within Xcc-8004.271.1 at 261.473 kb on - strand, within Xcc-8004.271.1 at 261.850 kb on + strand, within Xcc-8004.271.1 at 261.850 kb on + strand, within Xcc-8004.271.1 at 261.850 kb on + strand, within Xcc-8004.271.1 at 261.851 kb on - strand, within Xcc-8004.271.1 at 261.851 kb on - strand, within Xcc-8004.271.1
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 259,839 + Xcc-8004.268.1 0.26 -0.2 259,839 + Xcc-8004.268.1 0.26 -0.4 259,899 + Xcc-8004.268.1 0.40 +0.3 259,899 + Xcc-8004.268.1 0.40 +0.2 259,899 + Xcc-8004.268.1 0.40 +0.8 259,899 + Xcc-8004.268.1 0.40 -1.7 259,899 + Xcc-8004.268.1 0.40 +0.7 259,899 + Xcc-8004.268.1 0.40 +0.1 259,899 + Xcc-8004.268.1 0.40 -0.7 259,899 + Xcc-8004.268.1 0.40 -1.1 259,899 + Xcc-8004.268.1 0.40 -0.6 259,899 + Xcc-8004.268.1 0.40 +0.3 259,900 - Xcc-8004.268.1 0.41 -0.0 259,900 - Xcc-8004.268.1 0.41 -1.6 259,900 - Xcc-8004.268.1 0.41 -0.8 259,900 - Xcc-8004.268.1 0.41 +0.9 259,900 - Xcc-8004.268.1 0.41 -0.4 259,900 - Xcc-8004.268.1 0.41 -0.5 259,900 - Xcc-8004.268.1 0.41 -0.5 259,900 - Xcc-8004.268.1 0.41 +0.5 259,900 - Xcc-8004.268.1 0.41 +1.5 259,900 - Xcc-8004.268.1 0.41 +2.1 259,900 - Xcc-8004.268.1 0.41 -1.0 259,942 - Xcc-8004.268.1 0.51 +0.6 260,042 + Xcc-8004.268.1 0.74 -1.3 260,042 + Xcc-8004.268.1 0.74 -1.0 260,042 + Xcc-8004.268.1 0.74 +0.0 260,043 - Xcc-8004.268.1 0.74 +0.5 260,043 - Xcc-8004.268.1 0.74 -0.9 260,043 - Xcc-8004.268.1 0.74 -0.8 260,043 - Xcc-8004.268.1 0.74 +0.9 260,043 - Xcc-8004.268.1 0.74 -0.3 260,148 + +0.9 260,148 + -0.6 260,148 + -0.2 260,149 - +0.4 260,149 - +0.7 260,191 - -0.6 260,191 - +0.4 260,191 - +0.1 260,608 + Xcc-8004.269.1 0.84 -0.6 260,608 + Xcc-8004.269.1 0.84 +0.1 260,608 + Xcc-8004.269.1 0.84 -0.9 260,608 + Xcc-8004.269.1 0.84 -2.1 260,608 + Xcc-8004.269.1 0.84 -2.8 260,609 - Xcc-8004.269.1 0.84 -0.0 260,609 - Xcc-8004.269.1 0.84 -0.1 260,609 - Xcc-8004.269.1 0.84 -0.3 260,723 - +0.8 260,781 + -1.0 260,782 - +0.7 260,782 - -1.5 260,782 - -1.3 260,782 - -1.5 260,782 - -1.1 260,864 + Xcc-8004.270.1 0.15 -1.2 260,865 - Xcc-8004.270.1 0.15 -3.1 261,035 + Xcc-8004.270.1 0.49 -1.8 261,035 + Xcc-8004.270.1 0.49 -0.1 261,036 - Xcc-8004.270.1 0.49 -1.6 261,036 - Xcc-8004.270.1 0.49 -1.1 261,036 - Xcc-8004.270.1 0.49 -2.1 261,140 + Xcc-8004.270.1 0.69 -0.9 261,140 + Xcc-8004.270.1 0.69 -0.8 261,140 + Xcc-8004.270.1 0.69 -0.5 261,140 + Xcc-8004.270.1 0.69 +0.1 261,140 + Xcc-8004.270.1 0.69 -0.9 261,140 + Xcc-8004.270.1 0.69 -0.9 261,141 - Xcc-8004.270.1 0.69 -0.5 261,141 - Xcc-8004.270.1 0.69 -1.1 261,141 - Xcc-8004.270.1 0.69 -1.5 261,141 - Xcc-8004.270.1 0.69 -1.2 261,194 + Xcc-8004.270.1 0.80 +0.1 261,194 + Xcc-8004.270.1 0.80 -2.2 261,195 - Xcc-8004.270.1 0.80 -1.5 261,195 - Xcc-8004.270.1 0.80 +1.0 261,195 - Xcc-8004.270.1 0.80 -1.6 261,224 + Xcc-8004.270.1 0.85 +1.7 261,224 + Xcc-8004.270.1 0.85 -0.3 261,224 + Xcc-8004.270.1 0.85 -1.1 261,225 - Xcc-8004.270.1 0.86 -1.8 261,225 - Xcc-8004.270.1 0.86 -1.8 261,296 + -0.9 261,296 + +0.3 261,297 - -1.1 261,297 - -1.5 261,297 - +0.7 261,473 - Xcc-8004.271.1 0.15 -2.5 261,473 - Xcc-8004.271.1 0.15 -0.9 261,473 - Xcc-8004.271.1 0.15 -2.3 261,850 + Xcc-8004.271.1 0.52 -1.3 261,850 + Xcc-8004.271.1 0.52 -2.3 261,850 + Xcc-8004.271.1 0.52 -1.6 261,851 - Xcc-8004.271.1 0.52 -2.2 261,851 - Xcc-8004.271.1 0.52 -2.8
Or see this region's nucleotide sequence