Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.27.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
22,481	-		Xcc-8004.26.1	0.36	+0.1
22,678	+		Xcc-8004.26.1	0.57	+0.4
22,679	-		Xcc-8004.26.1	0.57	+1.6
22,981	+		Xcc-8004.26.1	0.88	-0.6
22,982	-		Xcc-8004.26.1	0.88	-0.4
22,982	-		Xcc-8004.26.1	0.88	-0.1
23,000	-		Xcc-8004.26.1	0.90	+0.7
23,008	+				-0.2
23,008	+				+0.7
23,008	+				+0.1
23,099	-				+0.3
23,192	+				+0.2
23,203	-				+0.2
23,203	-				-2.2
23,224	-				+0.6
23,224	-				+0.8
23,363	+		Xcc-8004.27.1	0.13	-1.0
23,363	+		Xcc-8004.27.1	0.13	-2.0
23,513	+				+0.4
23,513	+				+0.0
23,514	-				+1.3
23,514	-				+0.0
23,514	-				+0.5
23,640	+				+0.5
23,641	-				-1.3
23,641	-				+0.5
23,641	-				+0.2
23,641	-				-0.1
23,646	-				+1.1
23,646	-				+1.3
23,646	-				+0.7
23,700	+				+0.9
23,709	-				-0.9
23,709	-				+0.1
23,734	+				+0.2
23,734	+				-0.8
23,734	+				+0.1
23,734	+				-0.9
23,734	+				-0.2
23,734	+				+1.0
23,735	-				-0.4
23,735	-				+0.5
23,735	-				-0.1
23,735	-				+0.2
23,739	-				+0.0
23,739	-				-0.9
23,867	-				+0.1
23,925	+				+1.1
23,925	+				-1.8
23,926	-				+1.6
23,947	-				+1.0
23,947	-				-0.1
23,947	-				+0.2
24,037	-				-0.0
24,304	-		Xcc-8004.28.1	0.18	+1.0
24,468	+		Xcc-8004.28.1	0.29	+0.5
24,468	+		Xcc-8004.28.1	0.29	-0.7
24,469	-		Xcc-8004.28.1	0.29	-0.9
24,469	-		Xcc-8004.28.1	0.29	-1.5
24,469	-		Xcc-8004.28.1	0.29	-0.1
24,471	+		Xcc-8004.28.1	0.29	+0.9