Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2561.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2559.1 and Xcc-8004.2561.1 are separated by 221 nucleotidesXcc-8004.2561.1 and Xcc-8004.2562.1 overlap by 1 nucleotides Xcc-8004.2559.1: Xcc-8004.2559.1 - hypothetical protein, at 2,470,152 to 2,470,358 Xcc-8004.2559.1 Xcc-8004.2561.1: Xcc-8004.2561.1 - FIG01213638: hypothetical protein, at 2,470,580 to 2,471,506 Xcc-8004.2561.1 Xcc-8004.2562.1: Xcc-8004.2562.1 - FIG01210329: hypothetical protein, at 2,471,506 to 2,473,626 Xcc-8004.2562.1 Position (kb) 2470 2471 2472Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2469.580 kb on + strandat 2469.580 kb on + strandat 2469.776 kb on - strandat 2470.059 kb on + strandat 2470.060 kb on - strandat 2470.060 kb on - strandat 2470.095 kb on + strandat 2470.095 kb on + strandat 2470.095 kb on + strandat 2470.096 kb on - strandat 2470.153 kb on + strandat 2470.153 kb on + strandat 2470.153 kb on + strandat 2470.154 kb on - strandat 2470.154 kb on - strandat 2470.154 kb on - strandat 2470.154 kb on - strandat 2470.154 kb on - strandat 2470.165 kb on + strandat 2470.165 kb on + strandat 2470.165 kb on + strandat 2470.166 kb on - strandat 2470.166 kb on - strandat 2470.166 kb on - strandat 2470.166 kb on - strandat 2470.246 kb on + strand, within Xcc-8004.2559.1at 2470.269 kb on + strand, within Xcc-8004.2559.1at 2470.270 kb on - strand, within Xcc-8004.2559.1at 2470.270 kb on - strand, within Xcc-8004.2559.1at 2470.270 kb on - strand, within Xcc-8004.2559.1at 2470.438 kb on + strandat 2470.438 kb on + strandat 2470.542 kb on + strandat 2470.572 kb on + strandat 2470.572 kb on + strandat 2470.587 kb on + strandat 2470.587 kb on + strandat 2470.588 kb on - strandat 2470.588 kb on - strandat 2470.596 kb on + strandat 2470.627 kb on + strandat 2470.702 kb on + strand, within Xcc-8004.2561.1at 2470.765 kb on - strand, within Xcc-8004.2561.1at 2470.794 kb on + strand, within Xcc-8004.2561.1at 2470.794 kb on + strand, within Xcc-8004.2561.1at 2470.794 kb on + strand, within Xcc-8004.2561.1at 2470.794 kb on + strand, within Xcc-8004.2561.1at 2470.795 kb on - strand, within Xcc-8004.2561.1at 2470.795 kb on - strand, within Xcc-8004.2561.1at 2470.798 kb on + strand, within Xcc-8004.2561.1at 2470.798 kb on + strand, within Xcc-8004.2561.1at 2470.798 kb on + strand, within Xcc-8004.2561.1at 2470.798 kb on + strand, within Xcc-8004.2561.1at 2470.799 kb on - strand, within Xcc-8004.2561.1at 2470.799 kb on - strand, within Xcc-8004.2561.1at 2470.799 kb on - strand, within Xcc-8004.2561.1at 2470.799 kb on - strand, within Xcc-8004.2561.1at 2470.799 kb on - strand, within Xcc-8004.2561.1at 2470.811 kb on - strand, within Xcc-8004.2561.1at 2470.831 kb on + strand, within Xcc-8004.2561.1at 2470.831 kb on + strand, within Xcc-8004.2561.1at 2470.831 kb on + strand, within Xcc-8004.2561.1at 2470.831 kb on + strand, within Xcc-8004.2561.1at 2470.832 kb on - strand, within Xcc-8004.2561.1at 2470.832 kb on - strand, within Xcc-8004.2561.1at 2470.832 kb on - strand, within Xcc-8004.2561.1at 2470.832 kb on - strand, within Xcc-8004.2561.1at 2470.832 kb on - strand, within Xcc-8004.2561.1at 2470.832 kb on - strand, within Xcc-8004.2561.1at 2470.911 kb on + strand, within Xcc-8004.2561.1at 2470.912 kb on - strand, within Xcc-8004.2561.1at 2470.941 kb on + strand, within Xcc-8004.2561.1at 2470.942 kb on - strand, within Xcc-8004.2561.1at 2471.298 kb on + strand, within Xcc-8004.2561.1at 2471.298 kb on + strand, within Xcc-8004.2561.1at 2471.298 kb on + strand, within Xcc-8004.2561.1at 2471.298 kb on + strand, within Xcc-8004.2561.1at 2471.298 kb on + strand, within Xcc-8004.2561.1at 2471.298 kb on + strand, within Xcc-8004.2561.1at 2471.298 kb on + strand, within Xcc-8004.2561.1at 2471.298 kb on + strand, within Xcc-8004.2561.1at 2471.299 kb on - strand, within Xcc-8004.2561.1at 2471.299 kb on - strand, within Xcc-8004.2561.1at 2471.299 kb on - strand, within Xcc-8004.2561.1at 2471.299 kb on - strand, within Xcc-8004.2561.1at 2471.299 kb on - strand, within Xcc-8004.2561.1at 2471.299 kb on - strand, within Xcc-8004.2561.1at 2471.318 kb on + strand, within Xcc-8004.2561.1at 2471.318 kb on + strand, within Xcc-8004.2561.1at 2471.385 kb on + strand, within Xcc-8004.2561.1at 2471.447 kb on + strandat 2471.447 kb on + strandat 2471.447 kb on + strandat 2471.447 kb on + strandat 2471.448 kb on - strandat 2471.448 kb on - strandat 2471.448 kb on - strandat 2471.448 kb on - strandat 2471.448 kb on - strandat 2471.471 kb on + strandat 2471.507 kb on + strandat 2471.507 kb on + strandat 2471.507 kb on + strandat 2471.507 kb on + strandat 2471.508 kb on - strandat 2471.508 kb on - strandat 2471.508 kb on - strandat 2471.508 kb on - strandat 2471.508 kb on - strandat 2471.508 kb on - strandat 2471.760 kb on + strand, within Xcc-8004.2562.1at 2471.760 kb on + strand, within Xcc-8004.2562.1at 2471.761 kb on - strand, within Xcc-8004.2562.1at 2471.761 kb on - strand, within Xcc-8004.2562.1at 2471.761 kb on - strand, within Xcc-8004.2562.1at 2471.761 kb on - strand, within Xcc-8004.2562.1at 2471.761 kb on - strand, within Xcc-8004.2562.1at 2471.761 kb on - strand, within Xcc-8004.2562.1at 2471.762 kb on + strand, within Xcc-8004.2562.1at 2471.762 kb on + strand, within Xcc-8004.2562.1at 2471.762 kb on + strand, within Xcc-8004.2562.1at 2471.762 kb on + strand, within Xcc-8004.2562.1at 2471.762 kb on + strand, within Xcc-8004.2562.1at 2471.763 kb on - strand, within Xcc-8004.2562.1at 2471.763 kb on - strand, within Xcc-8004.2562.1at 2471.763 kb on - strand, within Xcc-8004.2562.1at 2471.763 kb on - strand, within Xcc-8004.2562.1at 2471.763 kb on - strand, within Xcc-8004.2562.1at 2471.763 kb on - strand, within Xcc-8004.2562.1at 2471.763 kb on - strand, within Xcc-8004.2562.1at 2471.763 kb on - strand, within Xcc-8004.2562.1at 2471.836 kb on + strand, within Xcc-8004.2562.1at 2471.836 kb on + strand, within Xcc-8004.2562.1at 2471.836 kb on + strand, within Xcc-8004.2562.1at 2471.837 kb on - strand, within Xcc-8004.2562.1at 2471.837 kb on - strand, within Xcc-8004.2562.1at 2471.837 kb on - strand, within Xcc-8004.2562.1at 2471.837 kb on - strand, within Xcc-8004.2562.1at 2471.837 kb on - strand, within Xcc-8004.2562.1at 2472.034 kb on + strand, within Xcc-8004.2562.1at 2472.034 kb on + strand, within Xcc-8004.2562.1at 2472.034 kb on + strand, within Xcc-8004.2562.1at 2472.035 kb on - strand, within Xcc-8004.2562.1at 2472.035 kb on - strand, within Xcc-8004.2562.1at 2472.035 kb on - strand, within Xcc-8004.2562.1at 2472.035 kb on - strand, within Xcc-8004.2562.1at 2472.046 kb on + strand, within Xcc-8004.2562.1at 2472.047 kb on - strand, within Xcc-8004.2562.1at 2472.270 kb on + strand, within Xcc-8004.2562.1at 2472.270 kb on + strand, within Xcc-8004.2562.1at 2472.271 kb on - strand, within Xcc-8004.2562.1at 2472.271 kb on - strand, within Xcc-8004.2562.1at 2472.271 kb on - strand, within Xcc-8004.2562.1at 2472.271 kb on - strand, within Xcc-8004.2562.1at 2472.272 kb on + strand, within Xcc-8004.2562.1at 2472.272 kb on + strand, within Xcc-8004.2562.1at 2472.272 kb on + strand, within Xcc-8004.2562.1at 2472.272 kb on + strand, within Xcc-8004.2562.1at 2472.272 kb on + strand, within Xcc-8004.2562.1at 2472.272 kb on + strand, within Xcc-8004.2562.1at 2472.273 kb on - strand, within Xcc-8004.2562.1at 2472.273 kb on - strand, within Xcc-8004.2562.1at 2472.273 kb on - strand, within Xcc-8004.2562.1at 2472.273 kb on - strand, within Xcc-8004.2562.1at 2472.273 kb on - strand, within Xcc-8004.2562.1at 2472.283 kb on + strand, within Xcc-8004.2562.1at 2472.283 kb on + strand, within Xcc-8004.2562.1at 2472.284 kb on - strand, within Xcc-8004.2562.1at 2472.373 kb on + strand, within Xcc-8004.2562.1at 2472.373 kb on + strand, within Xcc-8004.2562.1at 2472.466 kb on + strand, within Xcc-8004.2562.1at 2472.466 kb on + strand, within Xcc-8004.2562.1at 2472.467 kb on - strand, within Xcc-8004.2562.1at 2472.467 kb on - strand, within Xcc-8004.2562.1at 2472.483 kb on + strand, within Xcc-8004.2562.1at 2472.484 kb on - strand, within Xcc-8004.2562.1at 2472.484 kb on - strand, within Xcc-8004.2562.1at 2472.484 kb on - strand, within Xcc-8004.2562.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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2,469,580 + +1.1
2,469,580 + -0.3
2,469,776 - -0.5
2,470,059 + +1.7
2,470,060 - +0.3
2,470,060 - +1.1
2,470,095 + +0.4
2,470,095 + -0.8
2,470,095 + -0.4
2,470,096 - -0.2
2,470,153 + -0.9
2,470,153 + +0.4
2,470,153 + +1.1
2,470,154 - -0.5
2,470,154 - +0.4
2,470,154 - +0.4
2,470,154 - -1.1
2,470,154 - -0.3
2,470,165 + -0.9
2,470,165 + -1.7
2,470,165 + +0.4
2,470,166 - -2.1
2,470,166 - -1.3
2,470,166 - -0.8
2,470,166 - -0.7
2,470,246 + Xcc-8004.2559.1 0.45 -0.4
2,470,269 + Xcc-8004.2559.1 0.57 -1.2
2,470,270 - Xcc-8004.2559.1 0.57 -1.9
2,470,270 - Xcc-8004.2559.1 0.57 -1.6
2,470,270 - Xcc-8004.2559.1 0.57 -1.0
2,470,438 + +0.0
2,470,438 + -0.3
2,470,542 + +0.2
2,470,572 + -0.1
2,470,572 + -0.3
2,470,587 + +0.4
2,470,587 + -1.5
2,470,588 - -0.4
2,470,588 - +3.3
2,470,596 + -0.1
2,470,627 + -1.4
2,470,702 + Xcc-8004.2561.1 0.13 -2.3
2,470,765 - Xcc-8004.2561.1 0.20 +0.1
2,470,794 + Xcc-8004.2561.1 0.23 -0.9
2,470,794 + Xcc-8004.2561.1 0.23 -1.3
2,470,794 + Xcc-8004.2561.1 0.23 -1.3
2,470,794 + Xcc-8004.2561.1 0.23 -0.4
2,470,795 - Xcc-8004.2561.1 0.23 -1.8
2,470,795 - Xcc-8004.2561.1 0.23 -1.5
2,470,798 + Xcc-8004.2561.1 0.24 -1.3
2,470,798 + Xcc-8004.2561.1 0.24 -2.3
2,470,798 + Xcc-8004.2561.1 0.24 +0.7
2,470,798 + Xcc-8004.2561.1 0.24 -1.9
2,470,799 - Xcc-8004.2561.1 0.24 -1.3
2,470,799 - Xcc-8004.2561.1 0.24 -2.1
2,470,799 - Xcc-8004.2561.1 0.24 -0.5
2,470,799 - Xcc-8004.2561.1 0.24 -0.2
2,470,799 - Xcc-8004.2561.1 0.24 -0.6
2,470,811 - Xcc-8004.2561.1 0.25 -1.3
2,470,831 + Xcc-8004.2561.1 0.27 -1.8
2,470,831 + Xcc-8004.2561.1 0.27 -0.6
2,470,831 + Xcc-8004.2561.1 0.27 -1.3
2,470,831 + Xcc-8004.2561.1 0.27 -1.1
2,470,832 - Xcc-8004.2561.1 0.27 -1.6
2,470,832 - Xcc-8004.2561.1 0.27 -0.3
2,470,832 - Xcc-8004.2561.1 0.27 -0.8
2,470,832 - Xcc-8004.2561.1 0.27 -0.9
2,470,832 - Xcc-8004.2561.1 0.27 +0.1
2,470,832 - Xcc-8004.2561.1 0.27 -1.5
2,470,911 + Xcc-8004.2561.1 0.36 -0.6
2,470,912 - Xcc-8004.2561.1 0.36 -0.6
2,470,941 + Xcc-8004.2561.1 0.39 -1.3
2,470,942 - Xcc-8004.2561.1 0.39 -1.6
2,471,298 + Xcc-8004.2561.1 0.77 -0.3
2,471,298 + Xcc-8004.2561.1 0.77 -0.2
2,471,298 + Xcc-8004.2561.1 0.77 -1.3
2,471,298 + Xcc-8004.2561.1 0.77 -2.2
2,471,298 + Xcc-8004.2561.1 0.77 -1.9
2,471,298 + Xcc-8004.2561.1 0.77 +0.4
2,471,298 + Xcc-8004.2561.1 0.77 -1.4
2,471,298 + Xcc-8004.2561.1 0.77 -2.8
2,471,299 - Xcc-8004.2561.1 0.78 -2.3
2,471,299 - Xcc-8004.2561.1 0.78 +0.7
2,471,299 - Xcc-8004.2561.1 0.78 -1.6
2,471,299 - Xcc-8004.2561.1 0.78 -0.6
2,471,299 - Xcc-8004.2561.1 0.78 -1.4
2,471,299 - Xcc-8004.2561.1 0.78 -1.5
2,471,318 + Xcc-8004.2561.1 0.80 -0.4
2,471,318 + Xcc-8004.2561.1 0.80 -1.1
2,471,385 + Xcc-8004.2561.1 0.87 +0.2
2,471,447 + -0.6
2,471,447 + -1.0
2,471,447 + +1.2
2,471,447 + -0.2
2,471,448 - -2.0
2,471,448 - -1.8
2,471,448 - -1.5
2,471,448 - -0.3
2,471,448 - +0.7
2,471,471 + -0.4
2,471,507 + -0.6
2,471,507 + -0.5
2,471,507 + -2.7
2,471,507 + +0.6
2,471,508 - +0.7
2,471,508 - +0.8
2,471,508 - -0.6
2,471,508 - +0.9
2,471,508 - +0.1
2,471,508 - -0.7
2,471,760 + Xcc-8004.2562.1 0.12 -0.5
2,471,760 + Xcc-8004.2562.1 0.12 +2.0
2,471,761 - Xcc-8004.2562.1 0.12 +0.2
2,471,761 - Xcc-8004.2562.1 0.12 +0.9
2,471,761 - Xcc-8004.2562.1 0.12 -0.6
2,471,761 - Xcc-8004.2562.1 0.12 +0.4
2,471,761 - Xcc-8004.2562.1 0.12 -0.9
2,471,761 - Xcc-8004.2562.1 0.12 -0.0
2,471,762 + Xcc-8004.2562.1 0.12 +0.4
2,471,762 + Xcc-8004.2562.1 0.12 +0.5
2,471,762 + Xcc-8004.2562.1 0.12 +1.1
2,471,762 + Xcc-8004.2562.1 0.12 +0.1
2,471,762 + Xcc-8004.2562.1 0.12 -0.1
2,471,763 - Xcc-8004.2562.1 0.12 +0.0
2,471,763 - Xcc-8004.2562.1 0.12 -0.5
2,471,763 - Xcc-8004.2562.1 0.12 -0.3
2,471,763 - Xcc-8004.2562.1 0.12 -1.0
2,471,763 - Xcc-8004.2562.1 0.12 -0.4
2,471,763 - Xcc-8004.2562.1 0.12 +0.1
2,471,763 - Xcc-8004.2562.1 0.12 -0.2
2,471,763 - Xcc-8004.2562.1 0.12 -0.3
2,471,836 + Xcc-8004.2562.1 0.16 +0.2
2,471,836 + Xcc-8004.2562.1 0.16 -0.7
2,471,836 + Xcc-8004.2562.1 0.16 +0.7
2,471,837 - Xcc-8004.2562.1 0.16 -0.0
2,471,837 - Xcc-8004.2562.1 0.16 -0.6
2,471,837 - Xcc-8004.2562.1 0.16 +1.1
2,471,837 - Xcc-8004.2562.1 0.16 -2.3
2,471,837 - Xcc-8004.2562.1 0.16 -0.6
2,472,034 + Xcc-8004.2562.1 0.25 +0.3
2,472,034 + Xcc-8004.2562.1 0.25 -0.8
2,472,034 + Xcc-8004.2562.1 0.25 +0.5
2,472,035 - Xcc-8004.2562.1 0.25 +0.7
2,472,035 - Xcc-8004.2562.1 0.25 +0.3
2,472,035 - Xcc-8004.2562.1 0.25 -0.4
2,472,035 - Xcc-8004.2562.1 0.25 -0.1
2,472,046 + Xcc-8004.2562.1 0.25 +0.1
2,472,047 - Xcc-8004.2562.1 0.26 -0.6
2,472,270 + Xcc-8004.2562.1 0.36 +0.3
2,472,270 + Xcc-8004.2562.1 0.36 +0.5
2,472,271 - Xcc-8004.2562.1 0.36 -1.8
2,472,271 - Xcc-8004.2562.1 0.36 +1.7
2,472,271 - Xcc-8004.2562.1 0.36 +1.0
2,472,271 - Xcc-8004.2562.1 0.36 -0.2
2,472,272 + Xcc-8004.2562.1 0.36 -0.3
2,472,272 + Xcc-8004.2562.1 0.36 +1.3
2,472,272 + Xcc-8004.2562.1 0.36 -0.2
2,472,272 + Xcc-8004.2562.1 0.36 -3.2
2,472,272 + Xcc-8004.2562.1 0.36 -1.1
2,472,272 + Xcc-8004.2562.1 0.36 +0.2
2,472,273 - Xcc-8004.2562.1 0.36 -0.3
2,472,273 - Xcc-8004.2562.1 0.36 +0.8
2,472,273 - Xcc-8004.2562.1 0.36 +0.3
2,472,273 - Xcc-8004.2562.1 0.36 -0.6
2,472,273 - Xcc-8004.2562.1 0.36 -0.1
2,472,283 + Xcc-8004.2562.1 0.37 +0.7
2,472,283 + Xcc-8004.2562.1 0.37 +1.3
2,472,284 - Xcc-8004.2562.1 0.37 -0.4
2,472,373 + Xcc-8004.2562.1 0.41 -0.8
2,472,373 + Xcc-8004.2562.1 0.41 -1.1
2,472,466 + Xcc-8004.2562.1 0.45 +1.0
2,472,466 + Xcc-8004.2562.1 0.45 +1.4
2,472,467 - Xcc-8004.2562.1 0.45 +0.1
2,472,467 - Xcc-8004.2562.1 0.45 +2.0
2,472,483 + Xcc-8004.2562.1 0.46 +0.7
2,472,484 - Xcc-8004.2562.1 0.46 +0.4
2,472,484 - Xcc-8004.2562.1 0.46 -0.7
2,472,484 - Xcc-8004.2562.1 0.46 +0.5

Or see this region's nucleotide sequence