Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2447.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
2,384,929	+				+0.5
2,384,929	+				+1.1
2,384,929	+				+1.2
2,384,929	+				-0.7
2,384,929	+				+1.3
2,384,929	+				-0.8
2,384,929	+				-0.1
2,384,929	+				-0.7
2,384,929	+				-0.3
2,384,929	+				-0.3
2,384,929	+				-1.4
2,384,930	-				+0.2
2,384,930	-				+0.6
2,384,930	-				-0.3
2,384,930	-				+0.1
2,384,930	-				+0.5
2,384,930	-				-0.4
2,384,930	-				-0.5
2,384,930	-				+0.5
2,384,930	-				-0.1
2,384,930	-				-2.3
2,384,930	-				-0.7
2,384,930	-				+0.3
2,384,930	-				+0.2
2,384,930	-				+0.2
2,384,930	-				-0.5
2,384,930	-				+0.5
2,384,930	-				-2.7
2,384,949	+				-1.1
2,384,949	+				-0.1
2,384,949	+				+1.1
2,384,949	+				+0.6
2,384,949	+				-1.4
2,384,949	+				+0.8
2,384,949	+				+1.0
2,384,949	+				+0.1
2,384,949	+				+0.3
2,384,949	+				+0.9
2,384,949	+				+2.0
2,384,949	+				-0.4
2,384,949	+				+1.2
2,384,949	+				+0.3
2,384,950	-				+2.3
2,384,950	-				-1.4
2,384,950	-				-0.6
2,384,950	-				+0.2
2,384,950	-				+1.2
2,384,950	-				+0.4
2,384,950	-				+0.6
2,384,950	-				+1.1
2,384,950	-				-1.3
2,384,950	-				+0.6
2,384,950	-				-1.3
2,384,950	-				-0.4
2,384,950	-				-0.6
2,385,031	+				+0.5
2,385,031	+				+0.6
2,385,032	-				-0.7
2,385,095	+				-0.2
2,385,095	+				-2.0
2,385,095	+				-0.7
2,385,096	-				+0.4
2,385,096	-				+0.2
2,385,096	-				-0.3
2,385,096	-				+0.5
2,385,970	+				-2.7
2,385,970	+				-2.6
2,385,970	+				+1.1
2,385,971	-				+0.7
2,385,982	+				-2.7
2,385,982	+				-1.8
2,385,982	+				-2.2
2,385,982	+				-3.3
2,385,982	+				-1.0
2,385,983	-				-0.8
2,385,983	-				-0.8
2,385,983	-				-1.3
2,385,983	-				+0.3
2,385,983	-				+0.2
2,385,983	-				+1.0
2,385,983	-				+0.6
2,385,983	-				-1.1
2,385,983	-				-0.7
2,386,082	+				-0.6
2,386,373	+		Xcc-8004.2447.1	0.24	-2.1
2,386,373	+		Xcc-8004.2447.1	0.24	-2.4
2,386,396	+		Xcc-8004.2447.1	0.25	-1.4
2,386,642	+		Xcc-8004.2447.1	0.38	+0.0
2,386,642	+		Xcc-8004.2447.1	0.38	-1.1
2,386,642	+		Xcc-8004.2447.1	0.38	+0.3
2,386,642	+		Xcc-8004.2447.1	0.38	-1.1
2,386,642	+		Xcc-8004.2447.1	0.38	-0.8
2,386,642	+		Xcc-8004.2447.1	0.38	+0.7
2,386,642	+		Xcc-8004.2447.1	0.38	-2.8
2,386,642	+		Xcc-8004.2447.1	0.38	-1.6
2,386,642	+		Xcc-8004.2447.1	0.38	-2.5
2,386,642	+		Xcc-8004.2447.1	0.38	-0.3
2,386,642	+		Xcc-8004.2447.1	0.38	-3.4
2,386,642	+		Xcc-8004.2447.1	0.38	-1.1
2,386,642	+		Xcc-8004.2447.1	0.38	-0.6
2,386,642	+		Xcc-8004.2447.1	0.38	+1.7
2,386,642	+		Xcc-8004.2447.1	0.38	-0.3
2,386,642	+		Xcc-8004.2447.1	0.38	+0.7
2,386,642	+		Xcc-8004.2447.1	0.38	-0.3
2,386,642	+		Xcc-8004.2447.1	0.38	-2.4
2,386,642	+		Xcc-8004.2447.1	0.38	-1.1
2,386,642	+		Xcc-8004.2447.1	0.38	-2.5
2,386,642	+		Xcc-8004.2447.1	0.38	-1.7
2,386,642	+		Xcc-8004.2447.1	0.38	+0.2
2,386,642	+		Xcc-8004.2447.1	0.38	-0.8
2,386,642	+		Xcc-8004.2447.1	0.38	-1.6
2,386,642	+		Xcc-8004.2447.1	0.38	-0.8
2,386,642	+		Xcc-8004.2447.1	0.38	-2.7
2,386,642	+		Xcc-8004.2447.1	0.38	-2.5
2,386,642	+		Xcc-8004.2447.1	0.38	+0.7
2,386,642	+		Xcc-8004.2447.1	0.38	-1.7
2,386,643	-		Xcc-8004.2447.1	0.38	-1.8
2,386,643	-		Xcc-8004.2447.1	0.38	+0.2
2,386,643	-		Xcc-8004.2447.1	0.38	+0.9
2,386,643	-		Xcc-8004.2447.1	0.38	+0.0
2,386,643	-		Xcc-8004.2447.1	0.38	-0.3
2,386,643	-		Xcc-8004.2447.1	0.38	+0.8
2,386,643	-		Xcc-8004.2447.1	0.38	-0.8
2,386,643	-		Xcc-8004.2447.1	0.38	-0.6
2,386,643	-		Xcc-8004.2447.1	0.38	-0.3
2,386,643	-		Xcc-8004.2447.1	0.38	+0.2
2,386,643	-		Xcc-8004.2447.1	0.38	-0.5
2,386,643	-		Xcc-8004.2447.1	0.38	+0.7
2,386,643	-		Xcc-8004.2447.1	0.38	+0.0
2,386,643	-		Xcc-8004.2447.1	0.38	+1.4
2,386,643	-		Xcc-8004.2447.1	0.38	-0.3
2,386,643	-		Xcc-8004.2447.1	0.38	-0.4
2,386,643	-		Xcc-8004.2447.1	0.38	+0.9
2,386,643	-		Xcc-8004.2447.1	0.38	+0.2
2,386,643	-		Xcc-8004.2447.1	0.38	-1.6
2,386,643	-		Xcc-8004.2447.1	0.38	-0.1
2,386,643	-		Xcc-8004.2447.1	0.38	-0.3
2,386,643	-		Xcc-8004.2447.1	0.38	-0.6
2,386,643	-		Xcc-8004.2447.1	0.38	-0.1
2,386,643	-		Xcc-8004.2447.1	0.38	-1.6
2,386,643	-		Xcc-8004.2447.1	0.38	-0.5
2,386,681	+		Xcc-8004.2447.1	0.40	-3.4
2,386,681	+		Xcc-8004.2447.1	0.40	-0.6
2,386,681	+		Xcc-8004.2447.1	0.40	-0.6
2,386,682	-		Xcc-8004.2447.1	0.40	+0.2
2,386,682	-		Xcc-8004.2447.1	0.40	-0.5
2,386,682	-		Xcc-8004.2447.1	0.40	+0.2
2,386,729	+		Xcc-8004.2447.1	0.43	-0.8
2,386,729	+		Xcc-8004.2447.1	0.43	-0.7
2,386,730	-		Xcc-8004.2447.1	0.43	-1.3
2,386,730	-		Xcc-8004.2447.1	0.43	+0.2
2,386,730	-		Xcc-8004.2447.1	0.43	-0.1
2,386,730	-		Xcc-8004.2447.1	0.43	-2.2
2,387,010	+		Xcc-8004.2447.1	0.57	-2.3
2,387,153	-		Xcc-8004.2447.1	0.65	-0.7
2,387,153	-		Xcc-8004.2447.1	0.65	+0.0
2,387,153	-		Xcc-8004.2447.1	0.65	-2.3
2,387,179	+		Xcc-8004.2447.1	0.66	-1.6
2,387,179	+		Xcc-8004.2447.1	0.66	-2.4
2,387,179	+		Xcc-8004.2447.1	0.66	-2.1
2,387,179	+		Xcc-8004.2447.1	0.66	-1.6
2,387,179	+		Xcc-8004.2447.1	0.66	-2.0
2,387,180	-		Xcc-8004.2447.1	0.66	-0.4
2,387,180	-		Xcc-8004.2447.1	0.66	-0.1
2,387,180	-		Xcc-8004.2447.1	0.66	-0.6
2,387,180	-		Xcc-8004.2447.1	0.66	+0.3
2,387,180	-		Xcc-8004.2447.1	0.66	+0.3
2,387,180	-		Xcc-8004.2447.1	0.66	-1.3
2,387,233	+		Xcc-8004.2447.1	0.69	-1.4
2,387,233	+		Xcc-8004.2447.1	0.69	-1.9
2,387,233	+		Xcc-8004.2447.1	0.69	-3.5
2,387,234	-		Xcc-8004.2447.1	0.69	-0.3
2,387,234	-		Xcc-8004.2447.1	0.69	-0.5
2,387,234	-		Xcc-8004.2447.1	0.69	-1.3
2,387,374	+		Xcc-8004.2447.1	0.76	-2.9
2,387,374	+		Xcc-8004.2447.1	0.76	-1.1
2,387,374	+		Xcc-8004.2447.1	0.76	-1.8
2,387,374	+		Xcc-8004.2447.1	0.76	-1.4
2,387,374	+		Xcc-8004.2447.1	0.76	-2.2
2,387,374	+		Xcc-8004.2447.1	0.76	-2.6
2,387,374	+		Xcc-8004.2447.1	0.76	-2.2
2,387,374	+		Xcc-8004.2447.1	0.76	-0.6
2,387,375	-		Xcc-8004.2447.1	0.76	+0.7
2,387,375	-		Xcc-8004.2447.1	0.76	+0.1
2,387,375	-		Xcc-8004.2447.1	0.76	+0.7
2,387,563	+		Xcc-8004.2447.1	0.86	-2.8
2,387,602	+		Xcc-8004.2447.1	0.88	-2.1
2,387,755	+				-2.2
2,387,755	+				-0.3
2,387,840	+				-2.5
2,387,841	-				-0.3
2,387,841	-				-1.6
2,387,903	+				+0.1
2,387,903	+				-2.8
2,387,975	+				-1.4
2,387,975	+				-2.7
2,387,975	+				-1.7
2,387,976	-				+0.4
2,387,976	-				-0.5
2,387,976	-				-0.9
2,387,976	-				-0.5
2,388,734	-				-0.7
2,388,734	-				-1.7